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Quan (Andy) Gan 9d04147020 Update distributed.rst (#2249) (#2368) 
Co-authored-by: Hongyu Cai <h.tsai@hotmail.com>
 2020-11-27 03:21:19 +00:00
Mufei Li 4fd5e027e4 [WIP] Misc Fix (#2359) 
* Update

* Update

* Update
 2020-11-27 03:20:50 +00:00
zhjwy9343 2db8ccb487 [Doc] Chinese User Guide chapter 1 - 4 (#2351) 
* [Feature] Add full graph training with dgl built-in dataset.

* [Feature] Add full graph training with dgl built-in dataset.

* [Feature] Add full graph training with dgl built-in dataset.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Fix] Add random

* [Bug] Fix batch norm error

* [Doc] Test with CN in Sphinx

* [Doc] Test with CN in Sphinx

* [Doc] Remove the test CN docs.

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Doc] fill readme with new performance results

* [Doc] Add Chinese User Guide, graph and 1.5

* [Doc] Add Chinese User Guide, graph and 1.5

* Update README.md

* [Fix] Temporary remove compgcn

* [Doc] Add CN user guide chapter2

* [Test] Tunning format

* [Test] Tunning format

* [Test] Tunning format

* [Test] Tunning format

* [Test] Tunning format

* [Test] Section headers

* [Fix] Fix format errors

* [Fix] Fix format errors

* [Fix] Fix format errors

* [Doc] Add CN-EN EN-CN links

* [Doc] Add CN-EN EN-CN links

* [Doc] Copyedit chapter2

* [Doc] Copyedit chapter2

* [Doc] Remove EN in 2.1

* [Doc] Remove EN in chapter 2

* [Doc] Copyedit first 2 sections

* [Doc] Copyedit first 2 sections

* [Doc] copyedited chapter 2 CN

* [Doc] Add chapter 3 raw texts

* [Doc] Add chapter 3 preface and 3.1

* [Doc] Add chapter 3.2 and 3.3

* [Doc] Add chapter 3.2 and 3.3

* [Doc] Add chapter 3.2 and 3.3

* [Doc] Remove EN parts

* [Doc] Copyediting 3.1

* [Doc] Copyediting 3.2 and 3.3

* [Doc] Proofreading 3.1 and 3.2

* [Doc] Proofreading 3.2 and 3.3

* [Doc] Add chapter 4 CN raw text.

* [Clean] Remove codes in other branches

* [Doc] Start to copyedit chapter 4 preface

* [Doc] copyedit CN section 4.1

* [Doc] Remove EN in User Guide Chapter 4

* [Doc] Copyedit chapter 4.1

* [Doc] copyedit cn chapter 4.2, 4.3, 4.4, and 4.5.

* [Doc] Fix errors in EN user guide graph feature and heterograph

* [Doc] 2nd round copyediting with Murph's comments

* [Doc] 3rd round copyediting with Murph's comments

* [Doc] 3rd round copyediting with Murph's comments

* [Doc] 3rd round copyediting with Murph's comments

* [Sync] syncronize with the dgl master

* [Doc] edited after Minjie's comments, 1st round

* update cub

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2020-11-27 03:20:50 +00:00
Mufei Li 9e4138a25d Update (#2354) 2020-11-27 03:20:50 +00:00
pawelpiotrowicz c83685c855 [Performance] Dynamic cpu kernel V3 for SpMMSumCsr all Ops (#2309) 
* support AVX512

* env DGL_CPU_INTEL_KERNEL_ENABLED=1

* env DGL_CPU_INTEL_KERNEL_LOG=1

* Add unittest test_spmm.cc

Co-authored-by: Izabela Mazur <izabela.mazur@intel.com>
Co-authored-by: Michal Szarmach <michal.szarmach@intel.com>

Review patch
 2020-11-27 03:20:27 +00:00
Seung-woo Seo b25b442b42 [Doc] Same typos as 0.5.x (#2292) 
Some of SAGEGraph equation has typos.
 2020-11-27 03:17:12 +00:00
Mufei Li 1d588e0dc7 Update index.rst (#2254) 2020-11-27 03:17:12 +00:00
zhjwy9343 3ab2cb0185 [Doc] Chinese User Guide chapter1 (#2240) 
* [Feature] Add full graph training with dgl built-in dataset.

* [Feature] Add full graph training with dgl built-in dataset.

* [Feature] Add full graph training with dgl built-in dataset.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Fix] Add random

* [Bug] Fix batch norm error

* [Doc] Test with CN in Sphinx

* [Doc] Test with CN in Sphinx

* [Doc] Remove the test CN docs.

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Doc] fill readme with new performance results

* [Doc] Add Chinese User Guide, graph and 1.5

* [Doc] Add Chinese User Guide, graph and 1.5

* [Doc] Add Chines User Guide

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* Update README.md

* [Doc] Finalize CN user guide chapter 1

* [Doc] Finalize CN user guide chapter 1

* [Doc] Finalize CN user guide chapter 1

* [Doc] Add CN link in user guide chapter 1

* [Doc] Add CN link in user guide chapter 1

* [Fix] Temporary remove compgcn

* [Doc] Add Chines User Guide

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] Finalize CN user guide chapter 1

* [Doc] Finalize CN user guide chapter 1

* [Doc] Finalize CN user guide chapter 1

* [Doc] Add CN link in user guide chapter 1

* update hash in 3rd party

* [Fix] copyedit some errors

* [Fix] copyedit some errors

* [Fix] copyedit some errors

* [Fix] copyedit some errors

* [Fix] copyedit some errors

* Update

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2020-11-27 03:17:12 +00:00
Mufei Li ef5c14c864 Update message-efficient.rst (#2247) 2020-11-27 03:17:11 +00:00
Quan (Andy) Gan 3b429f52a4 [Doc] fix minibatch user guide broken code (#2233) 2020-11-27 03:17:11 +00:00
Mufei Li ae9c6d7299 Update (#2225) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-52-53.us-west-2.compute.internal>
 2020-11-27 03:17:11 +00:00
Mufei Li 805eedddff Update dgl.data.rst (#2217) 2020-11-27 03:17:11 +00:00
zhjwy9343 45894af2df Master refactor split chapter2n3 (#2215) 
* [Feature] Add full graph training with dgl built-in dataset.

* [Feature] Add full graph training with dgl built-in dataset.

* [Feature] Add full graph training with dgl built-in dataset.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Fix] Add random

* [Bug] Fix batch norm error

* [Doc] Test with CN in Sphinx

* [Doc] Test with CN in Sphinx

* [Doc] Remove the test CN docs.

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Doc] fill readme with new performance results

* [Doc] Add Chinese User Guide, graph and 1.5

* [Doc] Add Chinese User Guide, graph and 1.5

* [Doc] Refactor and split chapter 4

* [Fix] Remove CompGCN example codes

* [Doc] Add chapter 2 refactor and split

* [Fix] code format of savenload

* [Doc] Split chapter 3

* [Doc] Add introduction phrase of chapter 2

* [Doc] Add introduction phrase of chapter 2

* [Doc] Add introduction phrase of chapter 3

* Fix

* Update chapter 2

* Update chapter 3

* Update chapter 4

Co-authored-by: mufeili <mufeili1996@gmail.com>
 2020-11-27 03:17:11 +00:00
Quan Gan b7e5112661 Merge branch 'master' into 0.5.x 2020-09-17 12:04:49 +08:00
Quan (Andy) Gan 2fbffd3122 [bug][doc] Fix bug in batched heterograph training documentation (#2204) 
* [bug][doc] Fix bug in batched heterograph training documentation

* added references of "above" with hyperlinks

* address comments

* fix API doc on EdgeDataLoader

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2020-09-17 12:00:13 +08:00
Mufei Li f3f646bbfd [Doc and User Guide] Minor Fix (#2205) 
* Fix doc and user guide

* Update heterograph.py

Co-authored-by: Ubuntu <ubuntu@ip-172-31-13-9.us-west-2.compute.internal>
 2020-09-17 03:01:12 +08:00
Mufei Li ad6b215bbd [Doc and User Guide] Minor Fix (#2206) 
* [Distributed Example] Check args.num_servers with DGL_NUM_SERVER (#2203)

* update

* update

* update

* Fix doc and user guide

* Update heterograph.py

Co-authored-by: Chao Ma <mctt90@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-13-9.us-west-2.compute.internal>
 2020-09-17 02:59:55 +08:00
Hongyu Cai ef5986fbea Update backend.rst (#2202) 2020-09-15 20:42:16 +08:00
Tianjun Xiao 233e8198d3 [Doc]fix link in message passing doc (#2200) 
* fix link in message passing doc

* more specific link
 2020-09-15 16:52:26 +08:00
Mufei Li 877101a96b [Doc] Update Doc for UDFs (#2131) 
* Update Doc for UDFs

* add degree bucketing explanation

* Update udf.rst

* Update

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2020-09-13 04:57:06 +08:00
Quan (Andy) Gan 5e9d288951 fix typo (#2185) 
Co-authored-by: Zihao Ye <expye@outlook.com>
 2020-09-13 01:50:54 +08:00
Jinjing Zhou 0afacfb873 Fix create_format_ to create_formats (#2184) 
* Update dgl.DGLGraph.rst

* Update gcn.py
 2020-09-12 14:44:30 +08:00
Quan (Andy) Gan 4dae26a1fc [Doc] Fix typo in dataloading.negative_sampler (#2177) 
* fix dataloading docs

* fix another
 2020-09-11 19:39:48 +08:00
Quan (Andy) Gan 9eaace9216 rename create_format_ to create_formats_ (#2126) 2020-08-29 22:49:27 +08:00
Quan (Andy) Gan 745078e7a9 new code block style (#2113) 
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2020-08-29 21:17:04 +08:00
Jinjing Zhou 4125f63e72 Update docs (#2123) 
* Remove SSE

* Update env_var.rst
 2020-08-28 20:35:36 +08:00
Chao Ma 2a10732004 [User Guide] Update distributed training code (#2114) 
* check num_workers

* update

* update

* update

* update

* update

* update

* update user guide
 2020-08-27 14:41:33 +08:00
Minjie Wang b57bedb7ba migrate guide 2020-08-24 10:54:40 +00:00
Zihao Ye 5bc029b99f upd (#2097) 2020-08-23 21:25:31 +08:00
Minjie Wang 163398c036 Update dgl.DGLGraph.rst 2020-08-23 10:53:33 +08:00
Minjie Wang bcff14ccde [Dco] Remove preface in guide (#2096) 
* fix

* fix
 2020-08-23 10:27:15 +08:00
Da Zheng f86a8258d6 [Doc] Add user guide of distributed training. (#2091) 
* distributed APIs.

* add guide.

* add index.
 2020-08-21 15:02:33 -07:00
Tianjun Xiao 7ead28c315 [Doc] [NN] Fix message and nn user guide link (#2090) 
* fix user guide link

* some fix on tensorflow
 2020-08-22 00:18:22 +08:00
Xiangkun Hu 6f26cfcaec [Doc] Fix links and references in dataset user guide (#2085) 
* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref

* modify the link of save_graphs and load_graphs in dataset user guide

* move image to s3 server.

* fix links and ref
 2020-08-21 21:09:26 +08:00
Mufei Li 6d2129831d [User Guide] Split the Graph Chapter into Multiple RST Files (#2081) 
* Graph chapter, user guide

* Split

* Update
 2020-08-21 14:31:32 +08:00
Minjie Wang f13b9b6212 [Doc] Scan the API docs and make many changes (#2080) 
* WIP: api

* dgl.sampling, dgl.data

* dgl.sampling; dgl.dataloading

* sampling packages

* convert

* subgraph

* deprecate

* subgraph APIs

* All docstrings for convert/subgraph/transform

* almost all funcs under dgl namespace

* WIP: DGLGraph

* done graph query

* message passing functions

* lint

* fix merge error

* fix test

* lint

* fix

Co-authored-by: Quan Gan <coin2028@hotmail.com>
 2020-08-20 23:26:49 +08:00
Mufei Li debfd4bf78 Graph chapter, user guide (#2078) 2020-08-20 21:08:40 +08:00
Jinjing Zhou ef78d675e9 Fix docs (#2073) 
* remove mxnet tutorial

* remove sse

* fix docs
 2020-08-20 15:37:50 +08:00
Da Zheng 9da1629c9d [Distributed] Some small fixes on doc (#2049) 
* quick fix.

* update sparse optimizer.

* fix.

* fix
 2020-08-18 21:13:19 -07:00
Da Zheng 75ffc31f76 [Doc] Update the docstring of distributed APIs. (#2025) 
* add doc.

* update DistGraph.

* add DistTensor.

* update DistEmbedding.

* add partition.py

* add sampling.

* fix.

* add graph partition book and create a base class.

* fix test.

* add rst.

* update doc rst.

* update.

* fix.

* fix docs

* update distributed tensor and embeddings.

* add checks.

* update DistGraph.

* update initialization.

* fix graph partition book.

* update graph partition book.

* update partition.

* update partition.

* fix.

* add example code.

* update DistGraph

* Update python/dgl/distributed/dist_context.py

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_context.py

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_dataloader.py

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_dataloader.py

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_dataloader.py

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* update initialize.

* update dataloader.

* update distgraph.

* update DistGraph.

* update DistTensor.

* update.

* more updates.

* fix lint.

* add num_nodes and num_edges

Co-authored-by: Chao Ma <mctt90@gmail.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
 2020-08-18 11:53:45 -07:00
Tianjun Xiao 65866989c0 [NN] [Doc] Fix nn api doc (#2047) 
* fix mxnet nn doc and no note on chebconv

* change notes to note to highlight
 2020-08-18 23:47:16 +08:00
Mufei Li be444e52d9 [Doc/Feature] Refactor, doc update and behavior fix for graphs (#1983) 
* Update graph

* Fix for dgl.graph

* from_scipy

* Replace canonical_etypes with relations

* from_networkx

* Update for hetero_from_relations

* Roll back the change of canonical_etypes to relations

* heterograph

* bipartite

* Update doc

* Fix lint

* Fix lint

* Fix test cases

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Update

* Fix test

* Fix

* Update

* Use DGLError

* Update

* Update

* Update

* Update

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* rewrite sanity checks

* delete unnecessary checks

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Update

* Update

* Update

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Fix

* Update

* Fix

* Update

* Fix

Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Quan Gan <coin2028@hotmail.com>
 2020-08-18 04:26:29 +08:00
Jinjing Zhou 0afc3cf8e1 [NN] Add ChebConv for Tensorflow (#2038) 
* add chebconv

* fix

* lint

* fix lint

* docs
 2020-08-17 22:12:27 +08:00
Minjie Wang 5cb5759366 [Doc] split docs to multiple rst files (#2037) 2020-08-17 19:02:31 +08:00
Xiangkun Hu a9c4df67b9 [Doc] Move image in dataset User guide to s3 server (#2033) 
* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref

* modify the link of save_graphs and load_graphs in dataset user guide

* move image to s3 server.
 2020-08-17 15:33:41 +08:00
Quan (Andy) Gan 4f1da61b58 [Doc] fix inconsistencies in minibatch user guide (#2032) 2020-08-17 12:43:43 +08:00
Quan (Andy) Gan 1f7b219594 [Doc] User guide section 5 and 6 (#2029) 
* [Doc] User guide section 5 and 6

* oops

* fix
 2020-08-17 09:47:01 +08:00
Xiangkun Hu 62e69b67aa [Doc] Modify the link of save_graphs and load_graphs in dataset user guide (#2027) 
* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref

* modify the link of save_graphs and load_graphs in dataset user guide
 2020-08-15 09:21:08 +08:00
Jinjing Zhou de2e608bb3 Update dgl.rst (#2020) 2020-08-14 18:18:45 +08:00
Xiangkun Hu f4f78803cf [Doc] Update links by :ref in dataset user guide (#2024) 
* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref
 2020-08-14 17:28:54 +08:00