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0.5.2
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374 次代码提交

作者 SHA1 备注 提交日期
xiang song(charlie.song) 782527d481 Fix partition for 0.5.1 (#2187) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-24-210.ec2.internal>
 2020-09-13 16:25:51 +08:00
Leo 55f3e92631 [Fix] use DistDataLoader instead of Pytorch’s DataLoader. (#2182) 
Co-authored-by: hzliuchw <hzliuchw@corp.netease.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
 2020-09-12 20:08:39 +08:00
Jinjing Zhou 0afacfb873 Fix create_format_ to create_formats (#2184) 
* Update dgl.DGLGraph.rst

* Update gcn.py
 2020-09-12 14:44:30 +08:00
espylapiza 3659fb05e9 [Example] Fix duplicated (#2154) 
* [Example] GCN on ogbn-arxiv dataset

* Add README.md

* Update GCN implementation on ogbn-arxiv

* Update GCN on ogbn-arxiv

* Fix typo

* Use evaluator to get results

* Fix duplicated

* Fix duplicated

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Zihao Ye <expye@outlook.com>
 2020-09-05 23:35:12 +08:00
espylapiza 036084f6b6 [Example] Update GCN on ogbn-arxiv dataset (#2153) 
* [Example] GCN on ogbn-arxiv dataset

* Add README.md

* Update GCN implementation on ogbn-arxiv

* Update GCN on ogbn-arxiv

* Fix typo

* Use evaluator to get results

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Zihao Ye <expye@outlook.com>
 2020-09-05 20:07:50 +08:00
espylapiza 1a131f6b9d [Example] GCN on ogbn-arxiv dataset (#2146) 
* [Example] GCN on ogbn-arxiv dataset

* Add README.md

* Update GCN implementation on ogbn-arxiv

* Update GCN on ogbn-arxiv

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Zihao Ye <expye@outlook.com>
 2020-09-04 15:00:45 +08:00
xiang song(charlie.song) 7e7376eb4a [Hotfix] Fix unsupervised graphsage (#2143) 
* hotfix

* Hotfix

Co-authored-by: Ubuntu <ubuntu@ip-172-31-87-240.ec2.internal>
 2020-09-03 11:11:15 +08:00
Chao Ma e8273a8510 update README.md (#2138) 2020-09-02 15:42:28 +08:00
xiang song(charlie.song) 1e3fcc7c53 update comments (#2132) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
 2020-08-31 13:23:43 +08:00
espylapiza 7993a4d8e3 [Example] GCN on ogbn-arxiv dataset (#2124) 
* [Example] GCN on ogbn-arxiv dataset

* Add README.md

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Zihao Ye <expye@outlook.com>
 2020-08-30 22:03:07 +08:00
Quan (Andy) Gan 9eaace9216 rename create_format_ to create_formats_ (#2126) 2020-08-29 22:49:27 +08:00
xiang song(charlie.song) 0435b74c48 [Hotfix] Fix layer norm (#2119) 
* hotfix

* Fix Layer Norm

Co-authored-by: Ubuntu <ubuntu@ip-172-31-87-240.ec2.internal>
 2020-08-28 11:20:33 +08:00
Chao Ma 4327d7125d [Distributed] Check num_workers and num_samplers (#2108) 
* check num_workers

* update

* update

* update

* update

* update

* update
 2020-08-27 12:42:25 +08:00
Chao Ma 283b2cfb96 [Distributed] Fix issues of GraphSage to support running on GPU (#2084) 
* fix issues on GPU

* update

* update

* update

* update

* update

* update

* update

* update

* update

Co-authored-by: Ma <manchao@38f9d3587685.ant.amazon.com>
 2020-08-25 13:20:46 +08:00
Quan (Andy) Gan 28deee4d47 [Model] fix PinSAGE example for 0.5 release (#2072) 2020-08-20 12:51:44 +08:00
Mufei Li dba8c82571 Fix (#2070) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal>
 2020-08-20 10:25:20 +08:00
xiang song(charlie.song) 8f3e423c74 update Readme (#2068) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-63-129.ec2.internal>
 2020-08-19 23:04:19 +08:00
Mufei Li 2b77ad41e1 [Example] Fix GCMC (#2067) 
* Fix

* Update data.py

* Update README.md

* Fix

Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal>
 2020-08-19 20:58:57 +08:00
Mufei Li 100d932865 Update (#2062) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal>
 2020-08-19 17:42:48 +08:00
Mufei Li a260a6e615 [Example] Fix GATNE-T (#2061) 
* Update README.md

* Update

* Fix

Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal>
 2020-08-19 17:01:56 +08:00
xiang song(charlie.song) 4c5136c8f8 deprecated some mxnet example (#2054) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
 2020-08-19 15:50:57 +08:00
Mufei Li 6e8f760518 Update (#2057) 2020-08-19 14:24:39 +08:00
xiang song(charlie.song) 4edde000a4 Fix tree lstm (#2052) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-63-129.ec2.internal>
 2020-08-19 10:44:10 +08:00
xiang song(charlie.song) f3f35098e6 Fix (#2051) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-63-129.ec2.internal>
 2020-08-19 08:45:29 +08:00
xiang song(charlie.song) 0052f1212b [Example] Rgcn distributed training (#1999) 
* add entity_classify_dist

* upd

* update

* Fix

* Fix

* upd

* upd

* upd

* upd

* global eval

* Fix

* Fix

* Fix

* Fix

* FIx

* upd

* upd

* update

* support pytorch sparse embedding

* Fix

* Fix

* update Readme

* update with new API

* Fix

* update Readme

* add fanout for validation neighbor sampling

Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-24-210.ec2.internal>
Co-authored-by: Chao Ma <mctt90@gmail.com>
Co-authored-by: Da Zheng <zhengda1936@gmail.com>
 2020-08-18 12:12:21 -07:00
xiang song(charlie.song) 3d65484323 Fix mxnet gin (#2048) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
 2020-08-19 00:05:15 +08:00
Mufei Li 9088c63592 [Feature] Change the Default Value of transpose in DGLGraph.adj (#2046) 
* Update adj

* Fix
 2020-08-18 22:45:46 +08:00
Quan (Andy) Gan edfbee2ca8 [Feature] Make sample_neighbors copy features on demand (#2042) 
* fix

* fix

* lint

* fix

* test

* fix

* fix
 2020-08-18 22:25:19 +08:00
xiang song(charlie.song) 09ec6020ac [Example] rm gcn spmv (#2044) 
* rm gcn spmv

* remove useless test

* remove useless test

Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
 2020-08-18 17:48:38 +08:00
Zihao Ye 6d34628101 upd (#2043) 2020-08-18 17:15:31 +08:00
xiang song(charlie.song) 1a1f38e3fe remove kvstore example which is not maintianed and is out of date (#2041) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
 2020-08-18 15:09:21 +08:00
Quan (Andy) Gan 6367318f45 [Model] use dask to parallelize preprocessing (#2040) 2020-08-18 12:12:50 +08:00
Mufei Li be444e52d9 [Doc/Feature] Refactor, doc update and behavior fix for graphs (#1983) 
* Update graph

* Fix for dgl.graph

* from_scipy

* Replace canonical_etypes with relations

* from_networkx

* Update for hetero_from_relations

* Roll back the change of canonical_etypes to relations

* heterograph

* bipartite

* Update doc

* Fix lint

* Fix lint

* Fix test cases

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Update

* Fix test

* Fix

* Update

* Use DGLError

* Update

* Update

* Update

* Update

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* rewrite sanity checks

* delete unnecessary checks

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Update

* Update

* Update

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Fix

* Update

* Fix

* Update

* Fix

Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Quan Gan <coin2028@hotmail.com>
 2020-08-18 04:26:29 +08:00
Tianjun Xiao b1e69105d4 [Doc] API Doc update for mxnet and tf, remove some degree check (#2028) 
* mx tf relconv

* use method instead of private attr

* src and dst have different fc for gat

* update edgeconv

* change sage and sgconv

* no degree check on gin

* add remainding API doc

* fix pylint

* infer fc_src and fc_dst, only one tensor for block

* fix pytest
 2020-08-17 13:23:44 +08:00
Chao Ma eb9c067b08 [Distributed] Copy training scripts in copy_partitions.py (#2010) 
* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update
 2020-08-13 12:20:39 +08:00
Chao Ma 98c1117d00 update (#2007) 2020-08-12 16:07:15 +08:00
Chao Ma f5d8fa8476 [Distributed] Fix all arguments to the format of xx_xxx (#2005) 
* update

* update
 2020-08-12 14:45:30 +08:00
Xiangkun Hu 912da18c89 [Example] Update results in Sudoku example with RRN (#1998) 
* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* remove duplicate edges

* Update README.md

* change model save and load

* Update README.md

* Update README.md
 2020-08-12 12:05:30 +08:00
Da Zheng d1cf5c383e [Distributed] adjust various APIs. (#1993) 
* rename get_data_size.

* remove g from DistTensor.

* remove g from DistEmbedding.

* clean up API of graph partition book.

* fix DistGraph

* fix lint.

* collect all part policies.

* fix.

* fix.

* support distributed sampler.

* remove partition.py
 2020-08-11 20:22:00 -07:00
Quan (Andy) Gan a6b44e72b7 [Model] Fix GCMC broken code (#2001) 
* [Model] Fix GCMC debugging code

* use the one with apply_edges
 2020-08-12 09:44:21 +08:00
Da Zheng 4efa332044 [Distributed] Move server start code to initialize. (#2002) 
* move server start code to initialize.

* fix.

* fix lint.

* fix examples.

* add more checks.
 2020-08-11 16:58:18 -07:00
Quan (Andy) Gan f5eb80d221 [Feature] Edge DataLoader for edge classification & link prediction (#1828) 
* clean commit

* oops forgot the most important files

* use einsum

* copy feature from frontier to block

* Revert "copy feature from frontier to block"

This reverts commit 5224ec963eb6a3ef1b6ab74d8ecbd44e4e42f285.

* temp fix

* unit test

* fix

* revert jtnn

* lint

* fix win64

* docstring fixes and doc indexing

* revert einsum in sparse bidecoder

* fix some examples

* lint

* fix due to some tediousness in remove_edges

* addresses comments

* fix

* more jtnn fixes

* fix
 2020-08-11 18:00:58 +08:00
Chao Ma d340ea3aa8 [Distributed] Remove server_count from ip_config.txt (#1985) 
* remove server_count from ip_config.txt

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* lint

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* Update dist_context.py

* fix lint.

* make it work for multiple spaces.

* update ip_config.txt.

* fix examples.

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* udpate

* update

* update

* update

* update

* update

Co-authored-by: Da Zheng <zhengda1936@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>
 2020-08-11 17:41:48 +08:00
Jinjing Zhou a089b91fdf Remove stale partition code and fix #1949 (#1984) 
* remove unused code

* fix litn

* fix
 2020-08-11 10:51:07 +08:00
Da Zheng ee30b2aadd [Distributed] Fix standalone (#1974) 
* fix tests.

* fix.

* remove a test.

* make code work in the standalone mode.

* fix example.

* more fix.

* make DistDataloader work with num_workers=0

* fix DistDataloader tests.

* fix.

* fix lint.

* fix cleanup.

* fix test

* remove unnecessary code.

* remove tests.

* fix.

* fix.

* fix.

* fix example

* fix.

* fix.

* fix launch script.

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>
 2020-08-10 15:49:28 -07:00
gurdaspuriya 4097fa2173 [Feature] [Example] Graph matching routines with DGLGraphs (#1935) 
* Adding graph matching routines

* Adding graph matching routines

Co-authored-by: Ubuntu <ubuntu@ip-172-31-32-199.us-east-2.compute.internal>
Co-authored-by: Zihao Ye <expye@outlook.com>
 2020-08-09 20:52:40 +08:00
xiang song(charlie.song) 4ef01dbb05 [Example] Rgcn support ogbn-mag dataset. (#1812) 
* rgcn support ogbn-mag dataset

* upd

* multi-gpu val and test

* Fix

* fix

* Add support for ogbn-mag

* Fix

* Fix

* Fix

* Fix

* Add layer_norm

* update

* Fix merge

* Clean some code

* update Readme

* upd

Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-87-240.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
 2020-08-09 15:56:15 +08:00
Da Zheng 4b8eaf205b [Distributed] move feature copy to samplers in distributed GraphSage. (#1975) 
* fix example.

* move feature copy to sampler.

Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>
 2020-08-08 09:19:09 -07:00
Mufei Li d34cbf3180 Update train_sampling_unsupervised.py (#1973) 2020-08-08 17:21:15 +08:00
Zihao Ye 264d96cdf5 [bugfix] Fix a bunch of examples to be compatible with dgl 0.5 (#1957) 
* upd

* upd

* upd

* upd

* upd

* upd

* fix pinsage also

* upd

* upd

* upd

Co-authored-by: Ubuntu <ubuntu@ip-172-31-29-3.us-east-2.compute.internal>
Co-authored-by: Quan Gan <coin2028@hotmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2020-08-08 01:31:23 +08:00