db77283130
[Sparse] Only support scalar or vector values in SparseMatrix creators ( #5204 )
...
* [Sparse] Only support scalar or vector values in SparseMatrix creators
* Update
* Update sparse_matrix.py
Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com >
2023-01-19 21:46:46 +08:00
d965acab7f
Change size to shape in print. ( #5207 )
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Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2023-01-19 17:21:11 +08:00
c4ffd75223
[Misc] Polish the doc strings. ( #5203 )
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Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2023-01-19 16:37:08 +08:00
dffe722f5d
Update ( #5196 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2023-01-19 10:16:46 +08:00
16dd9584e6
[Sparse] Polish softmax.py. ( #5182 )
...
* polish
* [Sparse] Polish softmax.py.
* fix parameter and example
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2023-01-17 14:22:10 +08:00
82eb3d71a6
[Sparse] polish strings of matmul.py and sddmm.py. ( #5177 )
...
* polish mm docstrings
* fix typo
* small fix.
* fix
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2023-01-17 13:55:07 +08:00
84aae0863f
[Sparse] Polish reduction.py. ( #5180 )
...
* polish
* example
* revert_example
* pylint
* revert_input
* order
* add input as parameter
* example
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2023-01-17 13:34:11 +08:00
f554bc4873
[Sparse] Polish the docstring of SparseMatrix.csr() and SparseMatrix.csc() ( #5179 )
...
* [Sparse] Polish the docstring of SparseMatrix.csr() and SparseMatrix.csc()
* Update sparse_matrix.py
* Update
Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com >
2023-01-17 13:12:48 +08:00
fa74ea706a
[Sparse] Polish diag_matrix.py and sparse_matrix.py. ( #5178 )
...
* polish diagonal
* polsih
* more
* more
* add paramaters-back
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2023-01-17 10:46:11 +08:00
27010dbc55
[Sparse] Sparse matrix subtraction ( #5164 )
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* use NotImplemented
* format
* sparse sub
* address comments
* lint
* Update elementwise_op_diag.py
* ugh
Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com >
2023-01-16 11:37:42 +08:00
419fb8151b
[Sparse] Use X to represent dense tensors in sddmm ( #5174 )
...
* [Sparse] Use X to represent dense tensors in sddmm
* indent
* pylint: disable=invalid-name
Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com >
2023-01-15 11:52:06 +08:00
acc567aa08
[Sparse] Support sparse matrix dividing scalar ( #5173 )
...
* use NotImplemented
* format
* extend to pytorch scalar
* sparse div scalar
* oops
* Apply suggestions from code review
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2023-01-13 22:54:58 +08:00
b5c5c860f6
[Sparse] Refactor matmul interface. ( #5162 )
...
* [Sparse] Refactor matmul interface.
* Update
2023-01-13 20:08:40 +08:00
9334421d2b
[Sparse] Rename as_sparse to to_sparse, dense to to_dense. ( #5170 )
...
* as_sp_to_sp
* dense
* revert_mock
* test
* revert
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2023-01-13 17:03:20 +08:00
5f5db2dfc7
[Sparse] Make functions compatible with PyTorch scalar tensors ( #5163 )
...
* use NotImplemented
* format
* extend to pytorch scalar
* reformat
* reformat
* lint
2023-01-13 14:00:52 +08:00
1d1b08b044
[Sparse] Fix sddmm docstring ( #5169 )
2023-01-13 13:53:03 +08:00
8abf9d54e3
[Sparse] Use NotImplemented to let Python dispatch types ( #5160 )
...
* use NotImplemented
* add TypeError tests
* format
* lint
* fix type
* fix docstring
* lint
* remove redundant condition
2023-01-12 21:12:29 +08:00
84e4d0215f
change regex ( #5158 )
2023-01-12 15:04:22 +08:00
bff32a0986
[Sparse] Use efficient implementation for Diag @ Sparse and Sparse @ Diag. ( #5147 )
2023-01-12 11:53:46 +08:00
b743f767b6
fix ( #5151 )
...
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2023-01-12 10:13:18 +08:00
f94fa9d975
typo ( #5133 )
2023-01-11 22:21:11 +08:00
2a78e48f4e
polish ( #5150 )
...
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2023-01-11 19:55:38 +08:00
41b4180950
Polish ( #5149 )
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Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2023-01-11 19:31:08 +08:00
9c647d8095
[Sparse] Add elementwise mul and div method, and polish the python doc. ( #5142 )
...
* add mul and div
* polish
* equivalent
* indent
* double
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2023-01-11 19:07:32 +08:00
491c19fe4a
[Bugfix] Fix the call of tar.extractall() method ( #5139 )
2023-01-10 23:11:56 -08:00
d837029925
try again. ( #5141 )
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Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2023-01-11 12:59:50 +08:00
e032de5848
[Bugfix] Avoid initializing CUDA context at importing ( #5134 )
...
* Avoid initializing CUDA at importing
* renaming
2023-01-11 12:30:20 +08:00
1a33ee99d3
[Sparse] Update doc string of element-wise ops for DiagMatrix and SparseMatrix. ( #5136 )
...
* doc
* minor
* black
* no-lint
* reorg
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2023-01-11 12:08:24 +08:00
c5119480f2
[Sparse] Remove unnecessary API exposure. ( #5135 )
...
* remove unnecessary exposure.
* remove_add_power
* remove_warning
* reorder
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2023-01-11 11:47:14 +08:00
c6228c0118
update suffix ( #5128 )
2023-01-10 09:56:09 +08:00
b7042a141c
[BugFix] fix unexpected exception when agg_type is GCN and bias disabled ( #5127 )
...
* [BugFix] fix unexpected exception when agg_type is GCN and bias is disabled
* Update sageconv.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2023-01-10 09:05:44 +08:00
5c6af80444
CVE-2007-4559 Patch ( #5122 )
...
* Adding tarfile member sanitization to extractall()
* Update utils.py
Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com >
2023-01-09 11:49:10 +08:00
f1fb859f99
bump version to 1.0 ( #5123 )
2023-01-09 11:28:26 +08:00
580c702417
[DataLoader] Allow batch_size=None for GraphDataLoader ( #4483 )
...
* overwrite default_collate_fn
* Update dataloader.py
* Update dataloader.py
* Update dataloader.py
* Update dataloader.py
* Update test_dataloader.py
* revert the test code being reverted in #4956
2023-01-09 00:44:46 +08:00
e296c468b2
[Optimization] Optimize bias term in SageConv layer ( #4747 )
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* Optimize bias term in sageconv
* fix lint
* Remove bias sharing
* Update sageconv.py
Co-authored-by: Bartlomiej Gawrych <barlomiej.gawrych@intel.com >
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2023-01-08 13:06:46 +08:00
56ffb650fe
[API Deprecation]Deprecate contrib module ( #5114 )
2023-01-06 20:16:01 +08:00
436de3d120
[API Deprecation] Remove _dataloading and tgcn example ( #5118 )
2023-01-06 19:51:55 +08:00
c8bc558880
[Sparse] Remove SparseMatrix.indices and add device/dtype conversions ( #5108 )
...
* Update
* Update
* Update
* lint
* lint
* Update
* CI
* Update diag_matrix.py
* Update sparse_matrix.py
* Update sparse_matrix.py
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com >
2023-01-06 17:37:13 +08:00
c55ab2d147
deprecate candidates in dataloader ( #5117 )
2023-01-06 16:18:32 +08:00
3a2a5031e9
[API Deprecation]Deprecate candidates in dgl.distributed ( #5116 )
2023-01-06 16:17:44 +08:00
ab0c0ec68f
[API Deprecation] Deprecate candidates in convert module ( #4988 ) ( #5115 )
2023-01-06 14:45:52 +08:00
dde5cf5d02
[Bug] Fix NN modules crashing with non-FP32 inputs ( reopen #4262 ) ( #4829 )
...
* fix fp16 in nn modules
* fix lint
* remove the example
Co-authored-by: Quan Gan <coin2028@hotmail.com >
2023-01-06 14:18:19 +08:00
9169fc3541
[Sparse] Polish sparse matrix creation functions ( #5093 )
...
* update
* Update
* Update
* Update
* Update
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2023-01-03 22:59:57 +08:00
cd817a1a00
[NN] Add SpatialEncoder and SpatialEncoder3d ( #4991 )
...
* Add SpatialEncoder and SpatialEncoder3d
* Optimize the code execution efficiency
* Fixed certain problems according to Dongyu's suggestions.
* Fix an error about probability of division by zero in PathEcoder; Change certain designs in SpatialEncoder
* Fix a typo
* polish the docstring
* fix doc
* lint
Co-authored-by: Ubuntu <ubuntu@ip-172-31-14-146.ap-northeast-1.compute.internal >
Co-authored-by: rudongyu <ru_dongyu@outlook.com >
2023-01-03 14:02:14 +08:00
37bd092587
[Sparse] Namespace migration and doc update ( #5088 )
...
* update
* lint
* lint
* comments
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2022-12-29 20:34:29 +08:00
255ad1b35b
[Sparse] New print for SparseMatrix and DiagMatrix ( #5085 )
...
* new print func
* lintrunner
2022-12-29 15:38:10 +08:00
025e43210f
[Sparse] Add tests for sparse examples; Migrate from mock_sparse to mock_sparse2 ( #5073 )
...
* pass gcn
* example tests
* pass gcnii, hgnn, sgc, sign
* black
* test file
* add torchmetrics
* migrate appnp, c_and_s, twirls
* fix style
* minor fix
* fix hypergraphatt and twirls
* pass gat
* fix torchmetric
* lintrunner
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-12-29 08:55:25 +08:00
14429df661
[Sparse] Support BSpMM and BSDDMM ( #5079 )
...
* [Sparse] Support BSpMM and BSDDMM
* Update SpMM and SDDMM error messages
* Use TORCH_CHECK
* Update error string
2022-12-28 17:14:12 +08:00
fa5ff2fceb
[Sparse] Add coalesce and has_duplicate to SparseMatrix ( #5071 )
...
* add coalesce() and has_duplicate()
* Add duplicate check in spspmm
* black
* fix
* clang-format
* lintrunner
* minor fix
* fix
2022-12-28 13:10:10 +08:00
8c3e7830dc
[Sparse] Elementwise multiplication of a SparseMatrix object by a scalar ( #5076 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2022-12-28 09:37:44 +08:00
czkkkkkk