63ac788ff4
auto-reformat-nn ( #5319 )
...
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-02-19 08:33:30 +08:00
ab0c0ec68f
[API Deprecation] Deprecate candidates in convert module ( #4988 ) ( #5115 )
2023-01-06 14:45:52 +08:00
611393021a
[API Deprecation] Remove candidates in DGLGraph ( #4946 )
2022-12-01 16:41:53 +08:00
3132da2826
Deprecate ( #4864 )
...
rename DGLHeteroGraph to DGLGraph
2022-11-15 10:01:01 +08:00
76bb54044e
[Misc] Black auto fix. ( #4682 )
...
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2022-10-08 14:16:12 +08:00
6d9433b04f
[Transform] [Doc] Rename transform to transforms and update doc ( #3765 )
...
* Update
* Update
* Update
* Fix
* Update
* Update
* Update
* Fix
2022-02-24 21:28:15 +08:00
fa343873a8
Fix docs on GraphSAGE normalization ( #3711 )
...
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2022-02-07 17:56:04 +08:00
25c9221b83
Add check for aggregator_type enum in SAGEConv init ( #3691 )
...
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-02-03 12:02:35 +08:00
8f5baa15e4
[Doc] Fix spelling, references and update info on building docs ( #3682 )
...
* Fix ref to message-passing guide
* Fix pygments and spacing
* Update build documentation steps in README.md
* Use links
* Adjust parameters in SAGEConv docstring in same order as init
* Fix spelling error
* Change doc link
2022-01-25 17:22:18 +08:00
8798872f54
[Bug] Do not skip graphconv even no edge exists ( #3416 )
2021-10-14 14:34:42 +08:00
3f6f694159
[Bug fix] Various fix from bug bash ( #3133 )
...
* Update
* Update
* Update dependencies
* Update
* Update
* Fix ogbn-products gat
* Update
* Update
* Reformat
* Fix typo in node2vec_random_walk
* Specify file encoding
* Working for 6.7
* Update
* Fix subgraph
* Fix doc for sample_neighbors_biased
* Fix hyperlink
* Add example for udf cross reducer
* Fix
* Add example for slice_batch
* Replace dgl.bipartite
* Fix GATConv
* Fix math rendering
* Fix doc
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-17.us-west-2.compute.internal >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-22-156.us-west-2.compute.internal >
2021-07-15 09:17:15 +08:00
b576e617ad
[Feature] Add left normalizer for GCN ( #3114 )
...
* add left normalizer for gcn
* fix
* fixes and some bug stuff
2021-07-13 12:49:35 +08:00
5798ee8d98
[Performance] Add a warning for ChebConv ( #3099 )
...
* add a warning for chebconv
* fix and docstrings
* update bgnn
* fix
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-07-09 14:49:15 +08:00
fcfe52aee5
fix residual ( #2962 )
2021-06-01 13:50:39 +08:00
9983107384
[Feature] Support multidimensional features for GAT ( #2912 )
...
* support multidimensional features for GAT
* docstring
* lint
* fix
2021-05-15 02:47:23 +08:00
09ef2c2c3d
[Doc] Add Pseudo Code for HeteroGraphConv ( #2729 )
...
* Update
* Update
* Update
* Update
Co-authored-by: Ubuntu <ubuntu@ip-172-31-15-8.us-west-2.compute.internal >
2021-03-17 20:00:15 +08:00
3c8382f6b6
Fix typos in zero-in-degree ( #2750 )
2021-03-14 19:13:59 +08:00
dda103d9f6
Fix bug in EdgeConv implementation ( #2669 )
...
* Update edgeconv.py
* update edgeconv to builtin
* add explanation on why ReLU is not there
* remove redundant code
2021-02-19 13:07:21 +08:00
9e630101a1
fix and lots of tests ( #2650 )
2021-02-12 11:40:05 +08:00
1f6eba9ed3
[Bug] Heterogeneous graph convolution bugfix ( #2578 )
...
* fix heterograph conv
* remove test cases
* fix test
* fix test
* fix test
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-01-29 09:30:19 +08:00
6c23fba8fa
[Doc][Org] move edge_softmax to functional ( #2442 )
...
* move edge_softmax to functional
* change examples
* fixes
* revert
* fix
* fix
* remove
* fix
* test
* add init
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-01-26 12:46:37 +08:00
013d145663
[NN] Attention Retrieval for NN Modules ( #2397 )
...
* Update
* Update
2020-12-07 23:42:25 +08:00
65866989c0
[NN] [Doc] Fix nn api doc ( #2047 )
...
* fix mxnet nn doc and no note on chebconv
* change notes to note to highlight
2020-08-18 23:47:16 +08:00
be444e52d9
[Doc/Feature] Refactor, doc update and behavior fix for graphs ( #1983 )
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* Update graph
* Fix for dgl.graph
* from_scipy
* Replace canonical_etypes with relations
* from_networkx
* Update for hetero_from_relations
* Roll back the change of canonical_etypes to relations
* heterograph
* bipartite
* Update doc
* Fix lint
* Fix lint
* Fix test cases
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Fix test
* Fix
* Update
* Use DGLError
* Update
* Update
* Update
* Update
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Fix
* Fix
* Update
* Update
* Update
* Update
* Update
* Update
* rewrite sanity checks
* delete unnecessary checks
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Fix
* Update
* Update
* Update
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Fix
* Update
* Fix
* Update
* Fix
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
Co-authored-by: Quan Gan <coin2028@hotmail.com >
2020-08-18 04:26:29 +08:00
b1e69105d4
[Doc] API Doc update for mxnet and tf, remove some degree check ( #2028 )
...
* mx tf relconv
* use method instead of private attr
* src and dst have different fc for gat
* update edgeconv
* change sage and sgconv
* no degree check on gin
* add remainding API doc
* fix pylint
* infer fc_src and fc_dst, only one tensor for block
* fix pytest
2020-08-17 13:23:44 +08:00
4672c022a8
[hotfix] no in-degree check on sage ( #2014 )
...
* no degre check on sage
* fix pytest
* no in degree check for heteroconv
2020-08-13 13:11:55 +08:00
69f5869f3b
[Doc] NN doc refactor Conv Layers ( #1672 )
...
* go through gcn, relgcn
* fix tagconv formula
* fix doc in sageconv
* fix sgconv doc
* replace hat with tilde
* more comments on gmmconv
* fix agnnconv chebconv doc
* modify nnconv doc
* remove &
* add nn conv examples
* Rebase master
* More merge conflicts
* check homo
* add back self loop for some convs, check homo in tranform
* add example for denseconv
* add example and doc for dotgat and cfconv
* check in-degree for graphconv
* add language fix
* gconv address all comments
* another round of change based on api template
* change agnn
* go through agnn, appnp, atomic, cf, cheb, dense, gat, sage modules
* finish pytorch part of nn conv
* mxnet graphconv done
* tensorflow graphconv works
* add new modules into doc
* add comments to not split code
* refine doc
* resr
* more comments
* more fix
* finish conv and dense conv part api
* pylint fix
* fix pylink
* fix pylint
* more fix
* fix
* fix test fail because zere in degree
* fix test fail
* sage is not update for mxnet tf
Co-authored-by: Ubuntu <ubuntu@ip-172-31-0-81.us-east-2.compute.internal >
2020-08-12 18:47:19 +08:00
4ef01dbb05
[Example] Rgcn support ogbn-mag dataset. ( #1812 )
...
* rgcn support ogbn-mag dataset
* upd
* multi-gpu val and test
* Fix
* fix
* Add support for ogbn-mag
* Fix
* Fix
* Fix
* Fix
* Add layer_norm
* update
* Fix merge
* Clean some code
* update Readme
* upd
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-87-240.ec2.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
2020-08-09 15:56:15 +08:00
18bfec24cf
[hotfix] Refactor edge softmax module ( #1967 )
...
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
2020-08-07 23:50:12 +08:00
56339b34bf
[Fix] Update ogb examples according to new API. ( #1922 )
...
* upd
* upd
Co-authored-by: Ubuntu <ubuntu@ip-172-31-29-3.us-east-2.compute.internal >
2020-08-03 23:08:50 +08:00
2b8eb5be6f
[refactor] Move spmm and sddmm operators to operator module ( #1873 )
...
* upd
* upd
* upd
* upd
2020-07-28 18:39:12 +08:00
44089c8b4d
[Refactor][Graph] Merge DGLGraph and DGLHeteroGraph ( #1862 )
...
* Merge
* [Graph][CUDA] Graph on GPU and many refactoring (#1791 )
* change edge_ids behavior and C++ impl
* fix unittests; remove utils.Index in edge_id
* pass mx and th tests
* pass tf test
* add aten::Scatter_
* Add nonzero; impl CSRGetDataAndIndices/CSRSliceMatrix
* CSRGetData and CSRGetDataAndIndices passed tests
* CSRSliceMatrix basic tests
* fix bug in empty slice
* CUDA CSRHasDuplicate
* has_node; has_edge_between
* predecessors, successors
* deprecate send/recv; fix send_and_recv
* deprecate send/recv; fix send_and_recv
* in_edges; out_edges; all_edges; apply_edges
* in deg/out deg
* subgraph/edge_subgraph
* adj
* in_subgraph/out_subgraph
* sample neighbors
* set/get_n/e_repr
* wip: working on refactoring all idtypes
* pass ndata/edata tests on gpu
* fix
* stash
* workaround nonzero issue
* stash
* nx conversion
* test_hetero_basics except update routines
* test_update_routines
* test_hetero_basics for pytorch
* more fixes
* WIP: flatten graph
* wip: flatten
* test_flatten
* test_to_device
* fix bug in to_homo
* fix bug in CSRSliceMatrix
* pass subgraph test
* fix send_and_recv
* fix filter
* test_heterograph
* passed all pytorch tests
* fix mx unittest
* fix pytorch test_nn
* fix all unittests for PyTorch
* passed all mxnet tests
* lint
* fix tf nn test
* pass all tf tests
* lint
* lint
* change deprecation
* try fix compile
* lint
* update METIDS
* fix utest
* fix
* fix utests
* try debug
* revert
* small fix
* fix utests
* upd
* upd
* upd
* fix
* upd
* upd
* upd
* upd
* upd
* trigger
* +1s
* [kernel] Use heterograph index instead of unitgraph index (#1813 )
* upd
* upd
* upd
* fix
* upd
* upd
* upd
* upd
* upd
* trigger
* +1s
* [Graph] Mutation for Heterograph (#1818 )
* mutation add_nodes and add_edges
* Add support for remove_edges, remove_nodes, add_selfloop, remove_selfloop
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
* upd
* upd
* upd
* fix
* [Transfom] Mutable transform (#1833 )
* add nodesy
* All three
* Fix
* lint
* Add some test case
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* fix
* triger
* Fix
* fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
* [Graph] Migrate Batch & Readout module to heterograph (#1836 )
* dgl.batch
* unbatch
* fix to device
* reduce readout; segment reduce
* change batch_num_nodes|edges to function
* reduce readout/ softmax
* broadcast
* topk
* fix
* fix tf and mx
* fix some ci
* fix batch but unbatch differently
* new checkk
* upd
* upd
* upd
* idtype behavior; code reorg
* idtype behavior; code reorg
* wip: test_basics
* pass test_basics
* WIP: from nx/ to nx
* missing files
* upd
* pass test_basics:test_nx_conversion
* Fix test
* Fix inplace update
* WIP: fixing tests
* upd
* pass test_transform cpu
* pass gpu test_transform
* pass test_batched_graph
* GPU graph auto cast to int32
* missing file
* stash
* WIP: rgcn-hetero
* Fix two datasety
* upd
* weird
* Fix capsuley
* fuck you
* fuck matthias
* Fix dgmg
* fix bug in block degrees; pass rgcn-hetero
* rgcn
* gat and diffpool fix
also fix ppi and tu dataset
* Tree LSTM
* pointcloud
* rrn; wip: sgc
* resolve conflicts
* upd
* sgc and reddit dataset
* upd
* Fix deepwalk, gindt and gcn
* fix datasets and sign
* optimization
* optimization
* upd
* upd
* Fix GIN
* fix bug in add_nodes add_edges; tagcn
* adaptive sampling and gcmc
* upd
* upd
* fix geometric
* fix
* metapath2vec
* fix agnn
* fix pickling problem of block
* fix utests
* miss file
* linegraph
* upd
* upd
* upd
* graphsage
* stgcn_wave
* fix hgt
* on unittests
* Fix transformer
* Fix HAN
* passed pytorch unittests
* lint
* fix
* Fix cluster gcn
* cluster-gcn is ready
* on fixing block related codes
* 2nd order derivative
* Revert "2nd order derivative"
This reverts commit 523bf6c249bee61b51b1ad1babf42aad4167f206.
* passed torch utests again
* fix all mxnet unittests
* delete some useless tests
* pass all tf cpu tests
* disable
* disable distributed unittest
* fix
* fix
* lint
* fix
* fix
* fix script
* fix tutorial
* fix apply edges bug
* fix 2 basics
* fix tutorial
Co-authored-by: yzh119 <expye@outlook.com >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-7-42.us-west-2.compute.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal >
2020-07-28 14:30:41 +08:00
ec2e24be6d
[Feature] Slice dstnode features in NN modules ( #1838 )
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* slice dstdata from srcdata within nn module
* a bunch of fixes
* add comment
* fix gcmc layer
* repr for blocks
* fix
* fix context
* fix
* do not copy internal columns
* docstring
2020-07-25 21:57:49 +08:00
fb9d213848
Fix SAGEConv ( #1792 )
2020-07-12 13:32:14 +08:00
168a88e570
[Sampling] NodeDataLoader for node classification ( #1635 )
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* neighbor sampler data loader first commit
* more commit
* nodedataloader
* fix
* update RGCN example
* update OGB
* fixes
* fix minibatch RGCN crashing with self loop
* reverting gatconv test code
* fix
* change to new solution that doesn't require tf dataloader
* fix
* lint
* fix
* fixes
* change doc
* fix docstring
* docstring fixes
* return seeds and input nodes from data loader
* fixes
* fix test
* fix windows build problem
* add pytorch wrapper
* fixes
* add pytorch wrapper
* add unit test
* add -1 support to sample_neighbors & fix docstrings
* docstring fix
* lint
* add minibatch rgcn evaluations
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Tong He <hetong007@gmail.com >
2020-07-02 16:31:05 +08:00
61f007c43b
[NN] Add low memory support for nn.RelGraphConv ( #1631 )
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* Add low memory support for relgraphconv
y
* lint
* Add tf support
* Fix lint
* Fix mxnet
* Fix mxnet
* Fix
* minor fix
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
2020-06-15 13:49:11 +08:00
c2e61ce10b
[Refactor] Restrict sparse format for DGLHeteroGraph ( #1474 )
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* upd
* simplify
* further simplify
* lint
* doc
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* lint
* rename format
* upd
* lint
* upd
* upd
* upd
* udp
* debug
* upd
* upd
* upd
* upd
* upd
* 无可厚非吧
* 中三边肥
* 你一定要喊吗
* lint
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* Update unit_graph.h
Co-authored-by: Zihao Ye <yzh119@192.168 .0.110>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2020-05-14 22:11:12 +08:00
f25bc176d0
[Hetero] Improve speed of several Hetero APIs ( #1486 )
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* add clone function to frame
* add utest
* replace all local_var with local_scope
* fix utest
* avoid creating canonical types in __getitem__
* lint
* try another utest appraoch for mx
* utest
2020-05-01 15:21:33 +08:00
aefc080e30
[Doc] Fix GraphConv math notation ( #1430 )
2020-04-09 11:31:31 +08:00
af61e2fbb4
[Feature] Support nn modules for bipartite graphs. ( #1392 )
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* init gat
* fix
* gin
* 7 nn modules
* rename & lint
* upd
* upd
* fix lint
* upd test
* upd
* lint
* shape check
* upd
* lint
* address comments
* update tensorflow
Co-authored-by: Quan Gan <coin2028@hotmail.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2020-03-29 16:48:38 +08:00
3efb5d8ecf
[NN] Add HeteroGraphConv module for cleaner module definition ( #1385 )
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* Add HeteroGraphConv
* add custom aggregator; some docstring
* debugging
* rm print
* fix some acc bugs
* fix initialization problem in weight basis
* passed tests
* lint
* fix graphconv flag; add error message
* add mxnet heteroconv
* more fix for mx
* lint
* fix torch cuda test
* fix mx test_nn
* add exhaust test for graphconv
* add tf heteroconv
* fix comment
2020-03-27 18:47:06 +08:00
4af02022b2
[Bug] Multiple fixes ( #1374 )
...
* multiple fixes
* lint
* lint x2
2020-03-19 11:19:44 +08:00
988c8b20a4
[DOC] Improve the docstring of GATConv and new APIs ( #1339 )
...
* upd
* upd
* upd
* upd
* upd
2020-03-11 01:14:22 +08:00
93ac29ce34
[Refactor] Unify DGLGraph, BatchedDGLGraph and DGLSubGraph ( #1216 )
...
* upd
* upd
* upd
* lint
* fix
* fix test
* fix
* fix
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd tutorial
* upd
* upd
* fix kg
* upd doc organization
* refresh test
* upd
* refactor doc
* fix lint
Co-authored-by: Minjie Wang <minjie.wang@nyu.edu >
2020-03-05 18:03:57 +08:00
aa06e4579f
[Doc] Improve the docstring of several nn modules. ( #1187 )
...
* upd
* upd
* upd
* upd
* lint
* upd
* upd
* upd
* upd
* upd
Co-authored-by: VoVAllen <VoVAllen@users.noreply.github.com >
2020-01-09 21:14:33 +08:00
ca302a13ac
[Feature] Add dgl.nn.*.Sequential for usability ( #1166 )
...
* upd
* upd
* upd
* upd
* lint
* upd
* upd
* upd
* upd
Co-authored-by: VoVAllen <VoVAllen@users.noreply.github.com >
2020-01-09 12:39:22 +08:00
870857cfba
udp ( #1083 )
2019-12-09 14:52:20 +08:00
fdd0fe651d
hotfix ( #971 )
2019-11-04 12:11:53 +08:00
9a0511c8e9
[NN] nn modules & examples update ( #890 )
...
* upd
* damn it
* fuck
* fuck pylint
* fudge
* remove some comments about MXNet
* upd
* upd
* damn it
* damn it
* fuck
* fuck
* upd
* upd
* pylint bastard
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
2019-11-03 17:29:42 -05:00
ddb5d804f9
[Refactor] Break NN modules into files ( #859 )
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* break nn modules into files
* break mxnet nn modules
* fix lint
* fix lint
2019-09-16 14:44:15 +08:00
Hongzhi (Steve), Chen