文件历史

提交图

99 次代码提交

作者 SHA1 备注 提交日期
Minjie Wang f4608c2227 [CUDA][Kernel] A bunch of int64 kernels for COO and CSR (#1883)
* COO sort

* COOToCSR

* CSR2COO

* CSRSort; CSRTranspose

* pass all CSR tests

* lint

* remove int32 conversion

* fix tensorflow nn tests

* turn on CI

* fix

* addreess comments
2020-07-30 21:02:07 +08:00
Minjie Wang 444becf00a [Misc] Move many deprecated codes to the deprecate folder (#1893)
* some file movements

* move some codes to deprecated

* more deprecation

* lint

* remove useless test
2020-07-30 18:17:33 +08:00
Quan (Andy) Gan 68a978d4de [Model] Fixes JTNN for 0.5 (#1879)
* jtnn and fixes

* make metagraph a method

* fix test

* fix
2020-07-30 13:36:08 +08:00
Da Zheng 3e2f94ed20 [Distributed] Refactor distributed training to new DGLGraph. (#1874)
* fix tests in partition.

* fix DistGraph.

* fix without shared memory.

* fix sampling.

* enable distributed test.

* fix tests.

* fix a bug in shared-mem heterograph.

* print better error messages.

* fix.

* don't specify formats.

* fix.

* fix

* small fix.
2020-07-28 22:07:24 -07:00
Qidong Su 40950629b2 [Feature] Shared memory utilities (#1807)
* update

* update

* update

* update

* fix

* update

* fix

* update

* update

* win32

* update

* fix

* update

* update

* update

* updat

* update

* update

* fix

* update

* update

* update

* update

* update

* fix

* TODO

* 111

* fix

* minor fix

* minor fix

* fox

* Update shared_mem_manager.cc

* update

* update

* update

* update metis

* update metis

* update

Co-authored-by: VoVAllen <jz1749@nyu.edu>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
2020-07-28 15:26:15 +08:00
xiang song(charlie.song) 1c1bb77231 hot fix (#1871)
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal>
2020-07-28 14:46:27 +08:00
Minjie Wang 44089c8b4d [Refactor][Graph] Merge DGLGraph and DGLHeteroGraph (#1862)
* Merge

* [Graph][CUDA] Graph on GPU and many refactoring (#1791)

* change edge_ids behavior and C++ impl

* fix unittests; remove utils.Index in edge_id

* pass mx and th tests

* pass tf test

* add aten::Scatter_

* Add nonzero; impl CSRGetDataAndIndices/CSRSliceMatrix

* CSRGetData and CSRGetDataAndIndices passed tests

* CSRSliceMatrix basic tests

* fix bug in empty slice

* CUDA CSRHasDuplicate

* has_node; has_edge_between

* predecessors, successors

* deprecate send/recv; fix send_and_recv

* deprecate send/recv; fix send_and_recv

* in_edges; out_edges; all_edges; apply_edges

* in deg/out deg

* subgraph/edge_subgraph

* adj

* in_subgraph/out_subgraph

* sample neighbors

* set/get_n/e_repr

* wip: working on refactoring all idtypes

* pass ndata/edata tests on gpu

* fix

* stash

* workaround nonzero issue

* stash

* nx conversion

* test_hetero_basics except update routines

* test_update_routines

* test_hetero_basics for pytorch

* more fixes

* WIP: flatten graph

* wip: flatten

* test_flatten

* test_to_device

* fix bug in to_homo

* fix bug in CSRSliceMatrix

* pass subgraph test

* fix send_and_recv

* fix filter

* test_heterograph

* passed all pytorch tests

* fix mx unittest

* fix pytorch test_nn

* fix all unittests for PyTorch

* passed all mxnet tests

* lint

* fix tf nn test

* pass all tf tests

* lint

* lint

* change deprecation

* try fix compile

* lint

* update METIDS

* fix utest

* fix

* fix utests

* try debug

* revert

* small fix

* fix utests

* upd

* upd

* upd

* fix

* upd

* upd

* upd

* upd

* upd

* trigger

* +1s

* [kernel] Use heterograph index instead of unitgraph index (#1813)

* upd

* upd

* upd

* fix

* upd

* upd

* upd

* upd

* upd

* trigger

* +1s

* [Graph] Mutation for Heterograph (#1818)

* mutation add_nodes and add_edges

* Add support for remove_edges, remove_nodes, add_selfloop, remove_selfloop

* Fix

Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

* upd

* upd

* upd

* fix

* [Transfom] Mutable transform (#1833)

* add nodesy

* All three

* Fix

* lint

* Add some test case

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* fix

* triger

* Fix

* fix

Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

* [Graph] Migrate Batch & Readout module to heterograph (#1836)

* dgl.batch

* unbatch

* fix to device

* reduce readout; segment reduce

* change batch_num_nodes|edges to function

* reduce readout/ softmax

* broadcast

* topk

* fix

* fix tf and mx

* fix some ci

* fix batch but unbatch differently

* new checkk

* upd

* upd

* upd

* idtype behavior; code reorg

* idtype behavior; code reorg

* wip: test_basics

* pass test_basics

* WIP: from nx/ to nx

* missing files

* upd

* pass test_basics:test_nx_conversion

* Fix test

* Fix inplace update

* WIP: fixing tests

* upd

* pass test_transform cpu

* pass gpu test_transform

* pass test_batched_graph

* GPU graph auto cast to int32

* missing file

* stash

* WIP: rgcn-hetero

* Fix two datasety

* upd

* weird

* Fix capsuley

* fuck you

* fuck matthias

* Fix dgmg

* fix bug in block degrees; pass rgcn-hetero

* rgcn

* gat and diffpool fix
also fix ppi and tu dataset

* Tree LSTM

* pointcloud

* rrn; wip: sgc

* resolve conflicts

* upd

* sgc and reddit dataset

* upd

* Fix deepwalk, gindt and gcn

* fix datasets and sign

* optimization

* optimization

* upd

* upd

* Fix GIN

* fix bug in add_nodes add_edges; tagcn

* adaptive sampling and gcmc

* upd

* upd

* fix geometric

* fix

* metapath2vec

* fix agnn

* fix pickling problem of block

* fix utests

* miss file

* linegraph

* upd

* upd

* upd

* graphsage

* stgcn_wave

* fix hgt

* on unittests

* Fix transformer

* Fix HAN

* passed pytorch unittests

* lint

* fix

* Fix cluster gcn

* cluster-gcn is ready

* on fixing block related codes

* 2nd order derivative

* Revert "2nd order derivative"

This reverts commit 523bf6c249bee61b51b1ad1babf42aad4167f206.

* passed torch utests again

* fix all mxnet unittests

* delete some useless tests

* pass all tf cpu tests

* disable

* disable distributed unittest

* fix

* fix

* lint

* fix

* fix

* fix script

* fix tutorial

* fix apply edges bug

* fix 2 basics

* fix tutorial

Co-authored-by: yzh119 <expye@outlook.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-7-42.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal>
2020-07-28 14:30:41 +08:00
Quan (Andy) Gan ec2e24be6d [Feature] Slice dstnode features in NN modules (#1838)
* slice dstdata from srcdata within nn module

* a bunch of fixes

* add comment

* fix gcmc layer

* repr for blocks

* fix

* fix context

* fix

* do not copy internal columns

* docstring
2020-07-25 21:57:49 +08:00
xiang song(charlie.song) 200340ab38 [Transform] Reverse for heterogenous graph (#1784)
* reverse

* Add more test

* Fix lint

* Fix

* move to transform

* upd

* upd

* upd

* Add more test

* lint

* Fix

* Fix doc

* Fix

* test

* doc

* Fix

Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
2020-07-13 18:05:44 +08:00
xiang song(charlie.song) 8a183e3fcb [BugFix] Fix #1779 (#1781)
* Fix bug #1779

* Fix

Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
2020-07-10 17:35:23 +08:00
Quan (Andy) Gan 168a88e570 [Sampling] NodeDataLoader for node classification (#1635)
* neighbor sampler data loader first commit

* more commit

* nodedataloader

* fix

* update RGCN example

* update OGB

* fixes

* fix minibatch RGCN crashing with self loop

* reverting gatconv test code

* fix

* change to new solution that doesn't require tf dataloader

* fix

* lint

* fix

* fixes

* change doc

* fix docstring

* docstring fixes

* return seeds and input nodes from data loader

* fixes

* fix test

* fix windows build problem

* add pytorch wrapper

* fixes

* add pytorch wrapper

* add unit test

* add -1 support to sample_neighbors & fix docstrings

* docstring fix

* lint

* add minibatch rgcn evaluations

Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Tong He <hetong007@gmail.com>
2020-07-02 16:31:05 +08:00
Jinjing Zhou 18a26fcfb1 [Data] Support HeteroGraph save/load (#1526)
* 111

* add history version test

* fix

* 111

* save

* ``

* fix1

* 111

* add save heterograph

* lint

* lint

* add tests

* minor fix

* fix

* docs

* add format tets

* use unique_ptr

* fix

* fix interface

* 111

* 111

* fix

* lint

* fix

* add support to s3

* fix

* fix

* fix leak

* fix

* fix docs

* fix

* linlt

* fix

* fix

* fix

* address comment

* address comment

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
2020-06-30 13:34:50 +08:00
xiang song(charlie.song) 55072b4e83 [Feature] dgl.subgraph support Bool mask tensor as index. (#1709)
* dgl.subgraph support using Bool mask tensor

* support numpy boo tensor and add some test

* Update

* Fix docstring

Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
2020-06-28 22:08:04 +08:00
xiang song(charlie.song) b742c559fe [Feature]heterograph.edata and heterograph.ndata support multiple ntype and etype (#1673)
* g.edata and g.ndata support multiple ntype and etype

* Add test case

* support g.srcdata and g.dstdata

* Fix test

* lint

* Fix

* Fix some comments

* lint

Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
2020-06-26 21:11:22 +08:00
Minjie Wang f1b19a6b67 [CUDA] Many CUDA operators; Prepare for DGLGraph on CUDA (#1660)
* add cuda utils; change g.to; add g.device

* split array.h into several headers

* cuda index select

* file

* three cuda kernels

* add cuda elementwise arith and several others

* cuda CSRIsNonZero

* fix lint

* lint

* lint

* fix bug in changing ctx to property

* address comments

* remove unused codes

* address comments
2020-06-19 15:44:42 +08:00
Qidong Su 0a4e8b32b6 [Optimization] Optimize pickling of heterograph (#1570)
* update

* update

* update

* update

* update

* update

* backward compatibility

* update

* update

* update

* update

* update

* test

* test

* update

* update

* update

* update

* update

* update

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
2020-06-18 19:43:42 +08:00
Quan (Andy) Gan 3e72c53ae0 [Bug?] Fix #1563 (#1642) 2020-06-15 22:00:21 +08:00
Zihao Ye 04522a76c6 [bugfix] Quick fix of #1547 (#1600)
* upd

* upd
2020-06-15 09:27:37 +08:00
Mufei Li fe207b4564 [HeteroGraph] Improve Error Messages for find_edges (#1626)
* Improve error message

* Fix

* Fix

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
2020-06-11 21:29:47 +08:00
Zihao Ye 70dc2ee9c6 [Feature] Add a request_format api and enrich related docstring. (#1528)
* upd

* upd

* lint

* fix

* bloody lint
2020-05-16 01:17:06 +08:00
Quan (Andy) Gan 20ec7bb0d9 [Bug?] Fixing compatibility of pickles across DGL versions (#1507)
* pickle compatibility before 0.4.2

* fixing for utils.Index

* add TODOs

* fix

* fix

* more compatibility checks for DGLGraph and DGLHeteroGraph objects

* lint

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
2020-05-15 00:02:58 +08:00
Zihao Ye c2e61ce10b [Refactor] Restrict sparse format for DGLHeteroGraph (#1474)
* upd

* simplify

* further simplify

* lint

* doc

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* lint

* rename format

* upd

* lint

* upd

* upd

* upd

* udp

* debug

* upd

* upd

* upd

* upd

* upd

* 无可厚非吧

* 中三边肥

* 你一定要喊吗

* lint

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* Update unit_graph.h

Co-authored-by: Zihao Ye <yzh119@192.168.0.110>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
2020-05-14 22:11:12 +08:00
Jinjing Zhou dc8ca88e58 [Refactor] Explicit dtype for HeteroGraph (#1467)
* 111

* 111

* lint

* lint

* lint

* lint

* fix

* lint

* try

* fix

* lint

* lint

* test

* fix

* ttt

* test

* fix

* fix

* fix

* mxnet

* 111

* fix 64bits computation

* pylint

* roll back

* fix

* lint

* fix hetero_from_relations

* remove index_dtype in to_homo and to_hetero

* fix

* fix

* fix

* fix

* remove default

* fix

* lint

* fix

* fix error message

* fix error

* lint

* macro dispatch

* try

* lint

* remove nbits

* error message

* fix

* fix

* lint

* lint

* lint

* fix

* lint

* fix

* fix random walk

* lint

* lint

* fix

* fix

* fix

* lint

* fix

* lint

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
2020-05-08 14:26:28 +08:00
Minjie Wang f25bc176d0 [Hetero] Improve speed of several Hetero APIs (#1486)
* add clone function to frame

* add utest

* replace all local_var with local_scope

* fix utest

* avoid creating canonical types in __getitem__

* lint

* try another utest  appraoch for mx

* utest
2020-05-01 15:21:33 +08:00
Zihao Ye af61e2fbb4 [Feature] Support nn modules for bipartite graphs. (#1392)
* init gat

* fix

* gin

* 7 nn modules

* rename & lint

* upd

* upd

* fix lint

* upd test

* upd

* lint

* shape check

* upd

* lint

* address comments

* update tensorflow

Co-authored-by: Quan Gan <coin2028@hotmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
2020-03-29 16:48:38 +08:00
xiang song(charlie.song) 67cb7a43a0 [Feature] Deprecate multigraph (#1389)
* Deprecate multi-graph

* Handle heterograph and edge_ids

* lint

* Fix

* Remove multigraph in C++ end

* Fix lint

* Add some test and fix something

* Fix

* Fix

* upd

* Fix some test case

* Fix

* Fix

Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
2020-03-28 21:31:24 +08:00
Minjie Wang 3efb5d8ecf [NN] Add HeteroGraphConv module for cleaner module definition (#1385)
* Add HeteroGraphConv

* add custom aggregator; some docstring

* debugging

* rm print

* fix some acc bugs

* fix initialization problem in weight basis

* passed tests

* lint

* fix graphconv flag; add error message

* add mxnet heteroconv

* more fix for mx

* lint

* fix torch cuda test

* fix mx test_nn

* add exhaust test for graphconv

* add tf heteroconv

* fix comment
2020-03-27 18:47:06 +08:00
Mufei Li 0f40c6e49c [Hetero] Replace card with num_nodes
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
2020-03-20 16:56:53 +08:00
Quan (Andy) Gan 4af02022b2 [Bug] Multiple fixes (#1374)
* multiple fixes

* lint

* lint x2
2020-03-19 11:19:44 +08:00
Quan (Andy) Gan 0a51dc5435 [Bug] Fix dsttype in GraphSAGE minibatch model (#1371)
* fix for new ntype API for blocks

* adding two new interfaces
2020-03-18 23:57:03 +08:00
Minjie Wang 6111ea4665 [Model] RGCN mini-batch training; Better bipartite graph support (#1337)
* change the model to use node embedding only

* minibatch training

* add readme

* small fix

* backward-compatible

* backward compatible

* modify to_block; rgcn changed

* fix

* fix transform

* fix bug in unittest script

* docstring

* fix lint

* add tests

* address comments; fix offline eval

* gitignore
2020-03-16 18:58:06 +08:00
Quan (Andy) Gan a9520f71ce [Model][Sampler] GraphSAGE model, bipartite graph conversion & remove edges API (#1297)
* remove edge and to bipartite and graphsage with sampling

* fixes

* fixes

* fixes

* reenable multigpu training

* fixes

* compatibility in DGLGraph

* rename to compact_as_bipartite

* bugfix

* lint

* add offline inference

* skip GPU tests

* fix

* addresses comments

* fix

* fix

* fix

* more tests

* more docs and unit tests

* workaround for empty slice on empty data
2020-03-08 02:38:29 +08:00
Quan (Andy) Gan ce6e19f233 [Bugfix] Allows node types with no inbound/outbound edges (#1323)
* add num nodes in ctors

* fix

* lint

* addresses comments

* replace with constexpr

* remove function with rvalue reference

* address comments
2020-03-08 01:11:44 +08:00
Minjie Wang 5dd35580f7 [Feature] Improve sampling speed; Better pickle/unpickle; other fixes (#1299)
* improve performance of sample_neighbors

* some more improve

* test script

* benchmarks

* multi process

* update more tests

* WIP

* adding two API for state saving

* add create from state

* upd test

* missing file

* wip: pickle/unpickle

* more c apis

* find the problem of empty data array

* add null array; pickling speed is bad

* still bad perf

* still bad perf

* wip

* fix the pickle speed test; now everything looks good

* minor fix

* bugfix

* some lint fix

* address comments

* more fix

* fix lint

* add utest for random.choice

* add utest for dgl.rand_graph

* fix cpp utests

* try fix ci

* fix bug in TF backend

* upd choice docstring

* address comments

* upd

* try fix compile

* add comment
2020-03-02 23:16:05 +08:00
Minjie Wang c7f6cf6282 [Bugfix] Consistent order for cross-type stack reducer (#1267)
* WIP

* fix shape of stack reducer

* apply merge order by edge id for stack reducer
2020-02-18 13:54:11 +08:00
Minjie Wang f8d4264e5b [Feature] Neighbor-hood based sampling APIs (#1251)
* WIP: working on random choices

* light slice

* basic CPU impl

* add python binding; fix CreateFromCOO and CreateFromCSR returning unitgraph

* simple test case works

* fix bug in slicing probability array

* fix bug in getting the correct relation graph

* fix bug in creating placeholder graph

* enable omp

* add cpp test

* sample topk

* add in|out_subgraph

* try fix lint; passed all unittests

* fix lint

* fix msvc compile; add sorted flag and constructors

* fix msvc

* coosort

* COOSort; CSRRowWiseSampling; CSRRowWiseTopk

* WIP: remove DType in CSR and COO; Restrict data array to be IdArray

* fix all CSR ops for missing data array

* compiled

* passed tests

* lint

* test sampling out edge

* test different per-relation fanout/k values

* fix bug in random choice

* finished cpptest

* fix compile

* Add induced edges

* add check

* fixed bug in sampling on hypersparse graph; add tests

* add ascending flag

* in|out_subgraph returns subgraph and induced eid

* address comments

* lint

* fix
2020-02-17 21:25:21 +08:00
Quan (Andy) Gan c7c0fd0e37 [Feature] Accessing node/edge types in UDFs. (#1243)
* typed udf

* docstrings
2020-02-17 16:02:56 +08:00
Quan (Andy) Gan 365d361725 [Bug] Fix #1036 (#1037)
* fix

* unit test
2019-11-29 11:53:29 +08:00
Zhang Zhi 4f6063124b [Graph]To(device) should return updated object (#1057)
* To(device) should return updated object

* Add test case and doc

* Add another doc

* Add descriptions  and a test

* Pass test
2019-11-29 00:15:22 +08:00
Mufei Li ead64de98e [Hetero] Batching/Unbatching DGLHeteroGraph (#1017)
* Update

* Update

* Update

* Fix

* CI style fix

* CI fix style

* Fix

* Try CI

* Fix test

* Update

* Update

* Update

* Update
2019-11-26 14:40:50 +08:00
Mufei Li 6694f7b945 [Bug] Fix DGLHeteroGraph.edge_type_subgraph (#1040)
* Update

* Try CI
2019-11-25 03:35:25 +08:00
Quan (Andy) Gan a1cdc7a536 minor docstring fix (#910) 2019-10-08 16:49:01 +08:00
Mufei Li e2b7f745ca [Hetero] Doc (#892)
* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* style fixes & undefined name fix

* transpose=False in test
2019-10-06 20:17:40 +08:00
Quan (Andy) Gan b3d596b5bd extend warning to other adjacency_matrix() calls (#904) 2019-10-06 15:44:03 +08:00
Quan (Andy) Gan 0ca52bfc88 [Hetero] Create heterograph from dictionary of edge lists (#882)
* [Hetero] Create heterograph from dictionary of edge lists

* rename

* address comments
2019-09-30 15:41:41 +08:00
Mufei Li c03046a08f [Model][Hetero] HAN (#868)
* Add HAN

* Fix

* WIP; load raw ACM dataset

* DGL's own preprocessing with metapath coalescer

* various fixes

* comparison against simple logistic regression

* rename

* fix test
2019-09-27 12:53:16 +08:00
Minjie Wang 9b4d60799a [Hetero] New syntax (#824)
* WIP. remove graph arg in NodeBatch and EdgeBatch

* refactor: use graph adapter for scheduler

* WIP: recv

* draft impl

* stuck at bipartite

* bipartite->unitgraph; support dsttype == srctype

* pass test_query

* pass test_query

* pass test_view

* test apply

* pass udf message passing tests

* pass quan's test using builtins

* WIP: wildcard slicing

* new construct methods

* broken

* good

* add stack cross reducer

* fix bug; fix mx

* fix bug in csrmm2 when the CSR is not square

* lint

* removed FlattenedHeteroGraph class

* WIP

* prop nodes, prop edges, filter nodes/edges

* add DGLGraph tests to heterograph. Fix several bugs

* finish nx<->hetero graph conversion

* create bipartite from nx

* more spec on hetero/homo conversion

* silly fixes

* check node and edge types

* repr

* to api

* adj APIs

* inc

* fix some lints and bugs

* fix some lints

* hetero/homo conversion

* fix flatten test

* more spec in hetero_from_homo and test

* flatten using concat names

* WIP: creators

* rewrite hetero_from_homo in a more efficient way

* remove useless variables

* fix lint

* subgraphs and typed subgraphs

* lint & removed heterosubgraph class

* lint x2

* disable heterograph mutation test

* docstring update

* add edge id for nx graph test

* fix mx unittests

* fix bug

* try fix

* fix unittest when cross_reducer is stack

* fix ci

* fix nx bipartite bug; docstring

* fix scipy creation bug

* lint

* fix bug when converting heterograph from homograph

* fix bug in hetero_from_homo about ntype order

* trailing white

* docstring fixes for add_foo and data views

* docstring for relation slice

* to_hetero and to_homo with feature support

* lint

* lint

* DGLGraph compatibility

* incidence matrix & docstring fixes

* example string fixes

* feature in hetero_from_relations

* deduplication of edge types in to_hetero

* fix lint

* fix
2019-09-17 15:41:57 -04:00
Quan (Andy) Gan 52d4535b61 [Hetero][RFC] Heterogeneous graph Python interfaces & Message Passing (#752)
* moving heterograph index to another file

* node view

* python interfaces

* heterograph init

* bug fixes

* docstring for readonly

* more docstring

* unit tests & lint

* oops

* oops x2

* removed node/edge addition

* addressed comments

* lint

* rw on frames with one node/edge type

* homograph with underlying heterograph demo

* view is not necessary

* bugfix

* replace

* scheduler, builtins not working yet

* moving bipartite.h to header

* moving back bipartite to bipartite.h

* oops

* asbits and copyto for bipartite

* tested update_all and send_and_recv

* lightweight node & edge type retrieval

* oops

* sorry

* removing obsolete code

* oops

* lint

* various bug fixes & more tests

* UDF tests

* multiple type number_of_nodes and number_of_edges

* docstring fixes

* more tests

* going for dict in initialization

* lint

* updated api as per discussions

* lint

* bug

* bugfix

* moving back bipartite impl to cc

* note on views

* fix
2019-08-23 15:45:37 -04:00
Da Zheng 401f22cadd [API] Heterograph (#657)
* [Feature][RFC] Heterogeneous graph interface (#553)

* heterogeneous graph interface

* lint

* disable lints

* disable lint checks

* change node_types to dict

* update

* update

* heterograph view

* message passing with types

* clarifications

* graph queries

* clarifications

* moving add_XXX to Base

* from_networkx

* register functions

* Update heterograph.py

* lint.
2019-06-17 16:59:04 +08:00