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test_sparse_compile
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作者 SHA1 备注 提交日期
Israt Nisa 2accfc5dd1 replace with pow (#4662) 2022-09-29 22:42:34 -04:00
Israt Nisa 765d725e15 [Sparse] GAT example using sparse operator (#4645) 
* GAT example

* Complete GAT and Add README

* Update

Co-authored-by: Israt Nisa <nisisrat@amazon.com>
Co-authored-by: czkkkkkk <zekucai@gmail.com>
 2022-09-29 21:45:04 +08:00
czkkkkkk 9ceb63db78 [Sparse] Add Hetero RGCN example (#4650) 
* Add Hetero RGCN example

* Remove HeteroGraphWrapper and move model to entity_classify.py

* Add README
 2022-09-29 14:42:56 +08:00
czkkkkkk ec5e7bc564 [Sparse] Add gcn example (#4634) 2022-09-28 21:30:52 +08:00
Hongzhi (Steve), Chen 0b9df9d798 [Misc] Black auto fix. (#4652) 
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2022-09-28 10:28:24 +08:00
Hongzhi (Steve), Chen f19f05ce66 [Misc] Black auto fix. (#4651) 
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2022-09-28 10:28:04 +08:00
Chang Liu 99f726ff93 Fix MNIST examples (#4632) 2022-09-27 15:41:18 +08:00
Chang Liu 7f50a6da2e [Example][Bugfix] Fix mlp example (#4631) 
* Fix mlp example

* Remove unused file
 2022-09-27 15:11:00 +08:00
Hongzhi (Steve), Chen 23d09057e3 [Misc] Black auto fix. (#4642) 
* [Misc] Black auto fix.

* sort

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2022-09-26 21:47:11 +08:00
Hongzhi (Steve), Chen a9f2acf323 [Misc] Black auto fix. (#4641) 
* [Misc] Black auto fix.

* sort

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2022-09-26 21:46:32 +08:00
Chang Liu 533afa851e [Example][Refactor] Graphsage link prediction example refactor (#4526) 
* Refactor link pred example for graphsage

* Use ogb evaluator + README update

* Update

* Add comments
 2022-09-23 16:45:32 +08:00
Tong He 33c8abb9f4 [Doc] Update Readme for example Hilander (#4587) 
The example was updated in https://github.com/dmlc/dgl/pull/3972 but the README file was not. This PR updates it to reflect the correct environment requirement.

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2022-09-22 13:54:13 +08:00
Ereboas 92bff4d2bb [Example] SEAL+NGNN for ogbl (#4550) 
* Use black for formatting

* limit line width to 80 characters.

* Use a backslash instead of directly concatenating

* file structure adjustment.

* file structure adjustment(2)

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2022-09-22 13:09:27 +08:00
YanJun-Zhao ec4271bf87 [Example] Refactor GNNExplainer Example (#4560) 
* debug

* debug

* readme

* fix readme

* fix readme

* Update

* Update

* update

* fix bug of syn2

Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2022-09-21 13:34:39 +08:00
Rhett Ying 1bc77c5e61 [examples]educe memory consumption (#4558) 
* [examples]educe memory consumption

* reffine help message

* refine
 2022-09-15 19:27:20 +08:00
Chang Liu fce9614089 [Example][Refactor] Refactor graphsage multigpu and full-graph example (#4430) 
* Add refactors for multi-gpu and full-graph example

* Fix format

* Update

* Update

* Update
 2022-09-05 09:05:56 +08:00
rudongyu b9290e8b2d [Example] SEAL for OGBL (#4291) 
* [Example] SEAL for OGBL

* update index

* update

* fix readme typo

* add seal sampler

* modify set ops

* prefetch

* efficiency test

* update

* optimize

* fix ScatterAdd dtype issue

* update sampler style

* update

Co-authored-by: Quan Gan <coin2028@hotmail.com>
 2022-08-31 11:48:07 +08:00
Zhiteng Li 97b2ab53e2 [Example] directional_GSN for ogbg-molpcba (#4405) 
* version-1

* version-2

* version-3

* update examples/README

* Update .gitignore

* update performance in README, delete scripts

* 1st approving review

* 2nd approving review

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2022-08-26 15:37:54 +08:00
Chang Liu 40a2f3c760 [Example][Refactor] Refactor RGCN example (#4327) 
* Refactor full graph entity classification

* Refactor rgcn with sampling

* README update

* Update

* Results update

* Respect default setting of self_loop=false in entity.py

* Update

* Update README

* Update for multi-gpu

* Update
 2022-08-25 13:19:32 +08:00
peizhou001 d077d3719c [EXAMPLE]Add multi gpu graph predication GIN+virtualnode example (#4385) 
* add multigpu folder for related examples
 2022-08-19 09:38:19 +08:00
Rhett Ying e14860d9cc [Example][Bug] fix device index for dist train on GPUs (#4403) 2022-08-18 13:00:21 +08:00
Ereboas 49c8179548 [Example] NGNN for ogbl (#4328) 
* NGNN for ogbl

* modify doc organization.

* merge similar parts

* 1st approving review.

* minor changes

* Remove the "Usage" section.

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2022-08-13 19:11:45 +08:00
YJ-Zhao a88e7f7e28 [Example]rgcn-ogbn-mag (#4331) 
* rgcn-ogbn-mag

* Add link in README.md

* correct code-format,add the reset_parameters function to the HeteroEmbedding module

* add the annotation in hetero.py

* add a unit test

* modify format

* Update

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-50-143.us-west-2.compute.internal>
 2022-08-10 20:12:31 +08:00
Chang Liu 9a16a5e03d [Example][Refactor] Refactor GIN example (#4280) 
* Refactor GIN example

* Update

* Update README

* Minor update

* README update

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2022-08-01 13:40:28 +08:00
Wey Gu ee91863eb0 [Example] Fixed device type in GraphSAGE inference (#4306) 
* Fixed device type in inference

* change buffer_device instead
 2022-07-28 13:25:09 +08:00
Chang Liu 4f7972957b [Bugfix] Fix dataloader pytorch cuda indexing (#4297) 
* Modify to repro crash

* Revert to orig. scenario and add fix

* Update

Co-authored-by: Xin Yao <xiny@nvidia.com>
 2022-07-26 16:59:58 +08:00
Chang Liu 6e1be69a84 [Example][Refactor] Refactor GAT example (#4240) 
* Refactor gat example

* Add ppi support

* Minor update

* Update

* Update

* Change valid_xxx to val_xxx

* Readme Update

* Update

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2022-07-22 16:48:46 +08:00
Tianyue Cao 05aca98d6a [Example] Progressive Sample Selection (PSS). (#4263) 
* upload PSS

* upload PSS

* upload PSS

* pss code reformat

* fix bug

* update README

* update train bash

* remove vit

* update README

* delete InfoPlotter

* delete Smooth_AP_loss.py

* update README

* update README

Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com>
 2022-07-21 08:08:33 +08:00
Chang Liu 701b746b82 [Example][Bugfix] graphsage node classification example (#4260) 
* Fix node_classification.py

* Minor update

Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com>
 2022-07-19 11:28:35 -07:00
Chang Liu e26d206437 [Example][Bugfix] Fix link pred example in graphsage (#4255) 2022-07-14 08:30:51 +08:00
Chang Liu c56e27a807 [Bugfix] Accessing data from the indexes stored in same device (#4242) 
* First update to fix two examples

* Update to fix RGCN/graphsage example and dataloader

* Update
 2022-07-13 09:02:07 +08:00
Xin Yao 3e26c3d198 fix caregnn (#4211) 
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2022-07-08 16:16:30 +08:00
Chang Liu 52d43127f7 [Example][Bugfix] Fix arma example (#4218) 
* Fix arma example

* Update

Co-authored-by: Xin Yao <xiny@nvidia.com>
 2022-07-08 12:25:21 +08:00
Chang Liu 28b0904779 [Example][Bugfix] Fix dimenet example (#4219) 
Co-authored-by: Xin Yao <xiny@nvidia.com>
 2022-07-07 14:52:10 +08:00
Chang Liu 0d1b2c5a2c [Example] Update README file of eges example (#4220) 2022-07-07 09:14:40 +08:00
Chang Liu 885be1784b [Example][Refactor] Refactor GCN example (#4160) 
* Refactor GCN example

* Refactor GCN based on graphsage

* Readme update

* Minor update

* update

* Remove user-defined GCN implementation

* README update

* Update

* Update CONTRIBUTORS.md

* update task_example_test

Co-authored-by: Xin Yao <xiny@nvidia.com>
 2022-07-05 15:58:31 +08:00
Chang Liu 0f0e7c7fad [Example][Bugfix] Bugfix for dgi example (#4201) 2022-07-02 12:48:17 +08:00
Chang Liu a9768cb38f [Example][Refactor] Minor update on the golden example (#4197) 
* minor update on golden example

* update

* update

* Update README

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2022-07-01 14:34:45 +08:00
Chang Liu b76d0ed1db [Example][Refactor] Regolden graphsage example for future guide (#4186) 
* Regolden graphsage example to guide others

* update golden

* update

* Update example and propagate to original folder

* Update to remove ^M (windows DOS) character

* update

* Merge file changes and update README

* Minor comment update

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2022-06-30 21:56:13 +08:00
Chang Liu a6bd96aa96 Fix example crashes due to DGL API update (#4194) 
Co-authored-by: Xin Yao <xiny@nvidia.com>
 2022-06-30 21:10:44 +08:00
Lucas Prieto 548c85fff6 [BugFix] Fix Correct&Smooth (#4102) (#4158) 
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Xin Yao <xiny@nvidia.com>
 2022-06-23 18:11:15 +08:00
Chang Liu 598d746e59 [Example][Bugfix] Remove all torchtext legacy-related APIs for pytorch/pinsage example (#4130) 
* Remove all torchtext legacy-related APIs

* Remove unused BagOfWordsPretrained class, and fix some typos

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2022-06-23 16:06:18 +08:00
Xin Yao 077e002fe5 [Bugfix][Rework] Automatically unpin tensors pinned by DGL (rework #3997) (#4135) 
* Explicitly unpin tensoradapter allocated arrays

* Undo unrelated change

* Add unit test

* update unit test

* add pinned_by_dgl flag to NDArray::Container

* use dgl.ndarray for holding the pinning status

* update multi-gpu uva inference

* reinterpret cast NDArray::Container* to DLTensor* in MoveAsDLTensor

* update unpin column and examples

* add unit test for unpin column

Co-authored-by: Dominique LaSalle <dlasalle@nvidia.com>
Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com>
 2022-06-23 13:56:54 +08:00
Chang Liu 549df65a77 [Bugfix] Fix example case: examples/pytorch/ogb/ogbn-proteins and examples/pytorch/ogb/ogbn-products (#4080) 
* [Bugfix] Fix ogbn-gat-proteins/products examples

* Remove unused BatchSampler definition

* Remove comments to ease reading/reviewing

* Remove dataloader wrapper
 2022-06-09 15:45:28 +08:00
Sai Kandregula a3ea4873d3 [Example] Remove Bias in Linear layer because of BatchNorm1d usage (#4071) 
* typo fix in TUDataset docs

* remove bias in Linear layer because of BatchNorm1d

Co-authored-by: decoherencer <decoherencer@users.noreply.github.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2022-06-04 17:16:20 +08:00
Chang Liu d31448dd24 [Bugfix] Fix GCMC examples (#4082) 
* [Example][Bug] Fix GCMC examples

* Revert the change of model.py from #74f01405
 2022-06-04 11:19:33 +08:00
RecLusIve-F 0f2ff47de6 [Example] Add BGRL example (#4077) 
* Add BGRL example

* Update README.md

* Update utils.py

* Update

* Update utils.py
 2022-06-03 23:13:30 +08:00
Chang Liu 9e46423e4f [Bugfix] Fix cluster-gat examples (#4068) 
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2022-06-02 21:39:59 +08:00
Mufei Li bef993076e [Bugfix] Fix PinSAGE Benchmark (#4058) 
* Update

* Update

* Update dgl.data.rst

* CI
 2022-05-28 00:31:57 +08:00
彭齐荣 d1124b7bef [Example][BugFix] Fix Lightning GraphSAGE examples (dmlc#4046) (#4053) 2022-05-26 12:40:40 +08:00