revert-7155-argo_tutorial
123 次代码提交
| 作者 | SHA1 | 备注 | 提交日期 | |
|---|---|---|---|---|
|
|
93e3c49ddc |
[KG] Update CI to cover Knowledge Graph (#913)
* upd
* fig edgebatch edges
* add test
* trigger
* Update README.md for pytorch PinSage example.
Add noting that the PinSage model example under
example/pytorch/recommendation only work with Python 3.6+
as its dataset loader depends on stanfordnlp package
which work only with Python 3.6+.
* Provid a frame agnostic API to test nn modules on both CPU and CUDA side.
1. make dgl.nn.xxx frame agnostic
2. make test.backend include dgl.nn modules
3. modify test_edge_softmax of test/mxnet/test_nn.py and
test/pytorch/test_nn.py work on both CPU and GPU
* Fix style
* Delete unused code
* Make agnostic test only related to tests/backend
1. clear all agnostic related code in dgl.nn
2. make test_graph_conv agnostic to cpu/gpu
* Fix code style
* fix
* doc
* Make all test code under tests.mxnet/pytorch.test_nn.py
work on both CPU and GPU.
* Fix syntex
* Remove rand
* Add TAGCN nn.module and example
* Now tagcn can run on CPU.
* Add unitest for TGConv
* Fix style
* For pubmed dataset, using --lr=0.005 can achieve better acc
* Fix style
* Fix some descriptions
* trigger
* Fix doc
* Add nn.TGConv and example
* Fix bug
* Update data in mxnet.tagcn test acc.
* Fix some comments and code
* delete useless code
* Fix namming
* Fix bug
* Fix bug
* Add test for mxnet TAGCov
* Add test code for mxnet TAGCov
* Update some docs
* Fix some code
* Update docs dgl.nn.mxnet
* Update weight init
* Fix
* reproduce the bug
* Fix concurrency bug reported at #755.
Also make test_shared_mem_store.py more deterministic.
* Update test_shared_mem_store.py
* Update dmlc/core
* Update Knowledge Graph CI with new Docker image
* Remove unused line_profierx
* Poke Jenkins
* Update test with exit code check and simplify docker
* Update Jenkinsfile to make app test a standalone stage
* Update kg_test
* Update Jenkinsfile
* Make some KG test parallel
* Update
* KG MXNet does not support ComplEx
* Update Jenkinsfile
* Update Jenkins file
* Change torch-1.2 to torch-1.2-cu92
* ci
* Update ubuntu_install_mxnet_cpu.sh
* Update ubuntu_install_mxnet_gpu.sh
* We only need to test train and eval script.
Delete some test code
|
||
|
|
15b951d4c4 |
[KG][Model] Knowledge graph embeddings (#888)
* upd
* fig edgebatch edges
* add test
* trigger
* Update README.md for pytorch PinSage example.
Add noting that the PinSage model example under
example/pytorch/recommendation only work with Python 3.6+
as its dataset loader depends on stanfordnlp package
which work only with Python 3.6+.
* Provid a frame agnostic API to test nn modules on both CPU and CUDA side.
1. make dgl.nn.xxx frame agnostic
2. make test.backend include dgl.nn modules
3. modify test_edge_softmax of test/mxnet/test_nn.py and
test/pytorch/test_nn.py work on both CPU and GPU
* Fix style
* Delete unused code
* Make agnostic test only related to tests/backend
1. clear all agnostic related code in dgl.nn
2. make test_graph_conv agnostic to cpu/gpu
* Fix code style
* fix
* doc
* Make all test code under tests.mxnet/pytorch.test_nn.py
work on both CPU and GPU.
* Fix syntex
* Remove rand
* Add TAGCN nn.module and example
* Now tagcn can run on CPU.
* Add unitest for TGConv
* Fix style
* For pubmed dataset, using --lr=0.005 can achieve better acc
* Fix style
* Fix some descriptions
* trigger
* Fix doc
* Add nn.TGConv and example
* Fix bug
* Update data in mxnet.tagcn test acc.
* Fix some comments and code
* delete useless code
* Fix namming
* Fix bug
* Fix bug
* Add test for mxnet TAGCov
* Add test code for mxnet TAGCov
* Update some docs
* Fix some code
* Update docs dgl.nn.mxnet
* Update weight init
* Fix
* init version.
* change default value of regularization.
* avoid specifying adversarial_temperature
* use default eval_interval.
* remove original model.
* remove optimizer.
* set default value of num_proc
* set default value of log_interval.
* don't need to set neg_sample_size_valid.
* remove unused code.
* use uni_weight by default.
* unify model.
* rename model.
* remove unnecessary data sampler.
* remove the code for checkpoint.
* fix eval.
* raise exception in invalid arguments.
* remove RowAdagrad.
* remove unsupported score function for now.
* Fix bugs of kg
Update README
* Update Readme for mxnet distmult
* Update README.md
* Update README.md
* revert changes on dmlc
* add tests.
* update CI.
* add tests script.
* reorder tests in CI.
* measure performance.
* add results on wn18
* remove some code.
* rename the training script.
* new results on TransE.
* remove --train.
* add format.
* fix.
* use EdgeSubgraph.
* create PBGNegEdgeSubgraph to simplify the code.
* fix test
* fix CI.
* run nose for unit tests.
* remove unused code in dataset.
* change argument to save embeddings.
* test training and eval scripts in CI.
* check Pytorch version.
* fix a minor problem in config.
* fix a minor bug.
* fix readme.
* Update README.md
* Update README.md
* Update README.md
|
||
|
|
0fb13f7b9d |
[Feature] Data format (#728)
* Add serialization * add serialization * add serialization * lalalalalalalala * lalalalalalalala * serialize * serialize * nnn * WIP: import tvm runtime node system * WIP: object system * containers * tested basic container composition * tested custom object * tmp * fix setattr bug * tested object container return * fix lint * some comments about get/set state * fix lint * fix lint * update cython * fix cython * ffi doc * fix doc * WIP: using object system for graph * c++ side refactoring done; compiled * remove stale apis * fix bug in DGLGraphCreate; passed test_graph.py * fix bug in python modify; passed utest for pytorch/cpu * fix lint * Add serialization * Add serialization * fix * fix typo * serialize with new ffi * commit * commit * commit * save * save * save * save * commit * clean * Delete tt2.py * fix lint * Add serialization * fix lint 2 * fix lint * fix lint * fix lint * fix lint * Fix Lint * Add serialization * Change to Macro * fix * fix * fix bugs * refactor * refactor * updating dmlc-core to include force flag * trying tempfile * delete leaked pointer * Fix assert * fix assert * add comment and test case * add graph labels * add load labels * lint * lint * add graph labels * lint * fix windows * fix * update dmlc-core to latest * fix * fix camel naming |
||
|
|
6d42005052 |
[WIP][CI] Build Windows packages within virtualenv (#709)
* try venv for win64 * update * update * trying another * update * update * update * trigger ci * update * update |
||
|
|
2e9949d228 |
[BUGFIX] Fix bugs in shared mem graph store. (#630)
* fix graph store for Pytorch. * add test. * fix dtype error in test * disable test on GPU. * test avoid windows. * fix shared-memory test. * use script to control testing environment. * update test. * enable all tests. * fix test script. |
||
|
|
e35e860ae3 |
[Build] Support older CMake & OpenMP toggle (#619)
* cmake fixes for older systems * allow specification of cuda path * test script fixes to enable openmp & test * update minigun; disable minigun partial frontier compile |
||
|
|
653428bdc7 |
[Feature][Kernel] DGL kernel support (#596)
* [Kernel] Minigun integration and fused kernel support (#519) * kernel interface * add minigun * Add cuda build * functors * working on binary elewise * binary reduce * change kernel interface * WIP * wip * fix minigun * compile * binary reduce kernels * compile * simple test passed * more reducers * fix thrust problem * fix cmake * fix cmake; add proper guard for atomic * WIP: bcast * WIP * bcast kernels * update to new minigun pass-by-value practice * broadcasting dim * add copy src and copy edge * fix linking * fix none array problem * fix copy edge * add device_type and device_id to backend operator * cache csr adj, remove cache for adjmat and incmat * custom ops in backend and pytorch impl * change dgl-mg kernel python interface * add id_mapping var * clean up plus v2e spmv schedule * spmv schedule & clean up fall back * symbolic message and reduce func, remove bundle func * new executors * new backend interface for dgl kernels and pytorch impl * minor fix * fix * fix docstring, comments, func names * nodeflow * fix message id mapping and bugs... * pytorch test case & fix * backward binary reduce * fix bug * WIP: cusparse * change to int32 csr for cusparse workaround * disable cusparse * change back to int64 * broadcasting backward * cusparse; WIP: add rev_csr * unit test for kernels * pytorch backward with dgl kernel * edge softmax * fix backward * improve softmax * cache edge on device * cache mappings on device * fix partial forward code * cusparse done * copy_src_sum with cusparse * rm id getter * reduce grad for broadcast * copy edge reduce backward * kernel unit test for broadcasting * full kernel unit test * add cpu kernels * edge softmax unit test * missing ref * fix compile and small bugs * fix bug in bcast * Add backward both * fix torch utests * expose infershape * create out tensor in python * fix c++ lint * [Kernel] Add GPU utest and kernel utest (#524) * fix gpu utest * cuda utest runnable * temp disable test nodeflow; unified test for kernel * cuda test kernel done * [Kernel] Update kernel branch (#550) * [Model] add multiprocessing training with sampling. (#484) * reorganize sampling code. * add multi-process training. * speed up gcn_cv * fix graphsage_cv. * add new API in graph store. * update barrier impl. * support both local and distributed training. * fix multiprocess train. * fix. * fix barrier. * add script for loading data. * multiprocessing sampling. * accel training. * replace pull with spmv for speedup. * nodeflow copy from parent with context. * enable GPU. * fix a bug in graph store. * enable multi-GPU training. * fix lint. * add comments. * rename to run_store_server.py * fix gcn_cv. * fix a minor bug in sampler. * handle error better in graph store. * improve graphsage_cv for distributed mode. * update README. * fix. * update. * [Tutorial] add sampling tutorial. (#522) * add sampling tutorial. * add readme * update author list. * fix indent in the code. * rename the file. * update tutorial. * fix the last API. * update image. * [BUGFIX] fix the problems in the sampling tutorial. (#523) * add index. * update. * update tutorial. * fix gpu utest * cuda utest runnable * temp disable test nodeflow; unified test for kernel * cuda test kernel done * Fixing typo in JTNN after interface change (#536) * [BugFix] Fix getting src and dst id of ALL edges in NodeFlow.apply_block (#515) * [Bug Fix] Fix inplace op at backend (#546) * Fix inplace operation * fix line seprator * [Feature] Add batch and unbatch for immutable graph (#539) * Add batch and unbatch for immutable graph * fix line seprator * fix lintr * remove unnecessary include * fix code review * [BUGFix] Improve multi-processing training (#526) * fix. * add comment. * remove. * temp fix. * initialize for shared memory. * fix graphsage. * fix gcn. * add more unit tests. * add more tests. * avoid creating shared-memory exclusively. * redefine remote initializer. * improve initializer. * fix unit test. * fix lint. * fix lint. * initialize data in the graph store server properly. * fix test. * fix test. * fix test. * small fix. * add comments. * cleanup server. * test graph store with a random port. * print. * print to stderr. * test1 * test2 * remove comment. * adjust the initializer signature. * [API] update graph store API. (#549) * add init_ndata and init_edata in DGLGraph. * adjust SharedMemoryGraph API. * print warning. * fix comment. * update example * fix. * fix examples. * add unit tests. * add comments. * [Refactor] Immutable graph index (#543) * WIP * header * WIP .cc * WIP * transpose * wip * immutable graph .h and .cc * WIP: nodeflow.cc * compile * remove all tmp dl managed ctx; they caused refcount issue * one simple test * WIP: testing * test_graph * fix graph index * fix bug in sampler; pass pytorch utest * WIP on mxnet * fix lint * fix mxnet unittest w/ unfortunate workaround * fix msvc * fix lint * SliceRows and test_nodeflow * resolve reviews * resolve reviews * try fix win ci * try fix win ci * poke win ci again * poke * lazy multigraph flag; stackoverflow error * revert node subgraph test * lazy object * try fix win build * try fix win build * poke ci * fix build script * fix compile * add a todo * fix reviews * fix compile * [Kernel] Update kernel branch (#576) * [Model] add multiprocessing training with sampling. (#484) * reorganize sampling code. * add multi-process training. * speed up gcn_cv * fix graphsage_cv. * add new API in graph store. * update barrier impl. * support both local and distributed training. * fix multiprocess train. * fix. * fix barrier. * add script for loading data. * multiprocessing sampling. * accel training. * replace pull with spmv for speedup. * nodeflow copy from parent with context. * enable GPU. * fix a bug in graph store. * enable multi-GPU training. * fix lint. * add comments. * rename to run_store_server.py * fix gcn_cv. * fix a minor bug in sampler. * handle error better in graph store. * improve graphsage_cv for distributed mode. * update README. * fix. * update. * [Tutorial] add sampling tutorial. (#522) * add sampling tutorial. * add readme * update author list. * fix indent in the code. * rename the file. * update tutorial. * fix the last API. * update image. * [BUGFIX] fix the problems in the sampling tutorial. (#523) * add index. * update. * update tutorial. * fix gpu utest * cuda utest runnable * temp disable test nodeflow; unified test for kernel * cuda test kernel done * Fixing typo in JTNN after interface change (#536) * [BugFix] Fix getting src and dst id of ALL edges in NodeFlow.apply_block (#515) * [Bug Fix] Fix inplace op at backend (#546) * Fix inplace operation * fix line seprator * [Feature] Add batch and unbatch for immutable graph (#539) * Add batch and unbatch for immutable graph * fix line seprator * fix lintr * remove unnecessary include * fix code review * [BUGFix] Improve multi-processing training (#526) * fix. * add comment. * remove. * temp fix. * initialize for shared memory. * fix graphsage. * fix gcn. * add more unit tests. * add more tests. * avoid creating shared-memory exclusively. * redefine remote initializer. * improve initializer. * fix unit test. * fix lint. * fix lint. * initialize data in the graph store server properly. * fix test. * fix test. * fix test. * small fix. * add comments. * cleanup server. * test graph store with a random port. * print. * print to stderr. * test1 * test2 * remove comment. * adjust the initializer signature. * [API] update graph store API. (#549) * add init_ndata and init_edata in DGLGraph. * adjust SharedMemoryGraph API. * print warning. * fix comment. * update example * fix. * fix examples. * add unit tests. * add comments. * [Refactor] Immutable graph index (#543) * WIP * header * WIP .cc * WIP * transpose * wip * immutable graph .h and .cc * WIP: nodeflow.cc * compile * remove all tmp dl managed ctx; they caused refcount issue * one simple test * WIP: testing * test_graph * fix graph index * fix bug in sampler; pass pytorch utest * WIP on mxnet * fix lint * fix mxnet unittest w/ unfortunate workaround * fix msvc * fix lint * SliceRows and test_nodeflow * resolve reviews * resolve reviews * try fix win ci * try fix win ci * poke win ci again * poke * lazy multigraph flag; stackoverflow error * revert node subgraph test * lazy object * try fix win build * try fix win build * poke ci * fix build script * fix compile * add a todo * fix reviews * fix compile * all demo use python-3 (#555) * [DEMO] Reproduce numbers of distributed training in AMLC giant graph paper (#556) * update * update * update * update num_hops * fix bug * update * report numbers of distributed training in AMLC giant graph paper * [DEMO] Remove duplicate code for sampling (#557) * update * update * re-use single-machine code * update * use relative path * update * update * update * add __init__.py * add __init__.py * import sys, os * fix typo * update * [Perf] Improve performance of graph store. (#554) * fix. * use inplace. * move to shared memory graph store. * fix. * add more unit tests. * fix. * fix test. * fix test. * disable test. * fix. * [BUGIFX] fix a bug in edge_ids (#560) * add test. * fix compute. * fix test. * turn on test. * fix a bug. * add test. * fix. * disable test. * [DEMO] Add Pytorch demo for distributed sampler (#562) * update * update * update * add sender * update * remove duplicate cpde * [Test] Add gtest to project (#547) * add gtest module * add gtest * fix * Update CMakeLists.txt * Update README.md * [Perf] lazily create msg_index. (#563) * lazily create msg_index. * update test. * [BUGFIX] fix bugs for running GCN on giant graphs. (#561) * load mxnet csr. * enable load large csr. * fix * fix. * fix int overflow. * fix test. * [BugFix] Fix error when bfs_level = 0 in Entity Classification with RGCN (#559) * [DEMO] Update demo of distributed sampler (#564) * update * update * update demo * add network cpp test (#565) * Add unittest for C++ RPC (#566) * [CI] Fix CI for cpp test (#570) * fix CI for cpp test * update port number * [Docker] update docker image (#575) * update docker image * specify lint version * rm torch import from unified tests * [Kernel][Scheduler][MXNet] Scheduler for DGL kernels and MXNet backend support (#541) * [Model] add multiprocessing training with sampling. (#484) * reorganize sampling code. * add multi-process training. * speed up gcn_cv * fix graphsage_cv. * add new API in graph store. * update barrier impl. * support both local and distributed training. * fix multiprocess train. * fix. * fix barrier. * add script for loading data. * multiprocessing sampling. * accel training. * replace pull with spmv for speedup. * nodeflow copy from parent with context. * enable GPU. * fix a bug in graph store. * enable multi-GPU training. * fix lint. * add comments. * rename to run_store_server.py * fix gcn_cv. * fix a minor bug in sampler. * handle error better in graph store. * improve graphsage_cv for distributed mode. * update README. * fix. * update. * [Tutorial] add sampling tutorial. (#522) * add sampling tutorial. * add readme * update author list. * fix indent in the code. * rename the file. * update tutorial. * fix the last API. * update image. * [BUGFIX] fix the problems in the sampling tutorial. (#523) * add index. * update. * update tutorial. * fix gpu utest * cuda utest runnable * temp disable test nodeflow; unified test for kernel * cuda test kernel done * edge softmax module * WIP * Fixing typo in JTNN after interface change (#536) * mxnet backend support * improve reduce grad * add max to unittest backend * fix kernel unittest * [BugFix] Fix getting src and dst id of ALL edges in NodeFlow.apply_block (#515) * lint * lint * win build * [Bug Fix] Fix inplace op at backend (#546) * Fix inplace operation * fix line seprator * [Feature] Add batch and unbatch for immutable graph (#539) * Add batch and unbatch for immutable graph * fix line seprator * fix lintr * remove unnecessary include * fix code review * [BUGFix] Improve multi-processing training (#526) * fix. * add comment. * remove. * temp fix. * initialize for shared memory. * fix graphsage. * fix gcn. * add more unit tests. * add more tests. * avoid creating shared-memory exclusively. * redefine remote initializer. * improve initializer. * fix unit test. * fix lint. * fix lint. * initialize data in the graph store server properly. * fix test. * fix test. * fix test. * small fix. * add comments. * cleanup server. * test graph store with a random port. * print. * print to stderr. * test1 * test2 * remove comment. * adjust the initializer signature. * try * fix * fix * fix * fix * fix * try * test * test * test * try * try * try * test * fix * try gen_target * fix gen_target * fix msvc var_args expand issue * fix * [API] update graph store API. (#549) * add init_ndata and init_edata in DGLGraph. * adjust SharedMemoryGraph API. * print warning. * fix comment. * update example * fix. * fix examples. * add unit tests. * add comments. * [Refactor] Immutable graph index (#543) * WIP * header * WIP .cc * WIP * transpose * wip * immutable graph .h and .cc * WIP: nodeflow.cc * compile * remove all tmp dl managed ctx; they caused refcount issue * one simple test * WIP: testing * test_graph * fix graph index * fix bug in sampler; pass pytorch utest * WIP on mxnet * fix lint * fix mxnet unittest w/ unfortunate workaround * fix msvc * fix lint * SliceRows and test_nodeflow * resolve reviews * resolve reviews * try fix win ci * try fix win ci * poke win ci again * poke * lazy multigraph flag; stackoverflow error * revert node subgraph test * lazy object * try fix win build * try fix win build * poke ci * fix build script * fix compile * add a todo * fix reviews * fix compile * WIP * WIP * all demo use python-3 (#555) * ToImmutable and CopyTo * [DEMO] Reproduce numbers of distributed training in AMLC giant graph paper (#556) * update * update * update * update num_hops * fix bug * update * report numbers of distributed training in AMLC giant graph paper * [DEMO] Remove duplicate code for sampling (#557) * update * update * re-use single-machine code * update * use relative path * update * update * update * add __init__.py * add __init__.py * import sys, os * fix typo * update * [Perf] Improve performance of graph store. (#554) * fix. * use inplace. * move to shared memory graph store. * fix. * add more unit tests. * fix. * fix test. * fix test. * disable test. * fix. * [BUGIFX] fix a bug in edge_ids (#560) * add test. * fix compute. * fix test. * turn on test. * fix a bug. * add test. * fix. * disable test. * DGLRetValue DGLContext conversion * [DEMO] Add Pytorch demo for distributed sampler (#562) * update * update * update * add sender * update * remove duplicate cpde * [Test] Add gtest to project (#547) * add gtest module * add gtest * fix * Update CMakeLists.txt * Update README.md * Add support to convert immutable graph to 32 bits * [Perf] lazily create msg_index. (#563) * lazily create msg_index. * update test. * fix binary reduce following new minigun template * enable both int64 and int32 kernels * [BUGFIX] fix bugs for running GCN on giant graphs. (#561) * load mxnet csr. * enable load large csr. * fix * fix. * fix int overflow. * fix test. * new kernel interface done for CPU * docstring * rename & docstring * copy reduce and backward * [BugFix] Fix error when bfs_level = 0 in Entity Classification with RGCN (#559) * [DEMO] Update demo of distributed sampler (#564) * update * update * update demo * adapt cuda kernels to the new interface * add network cpp test (#565) * fix bug * Add unittest for C++ RPC (#566) * [CI] Fix CI for cpp test (#570) * fix CI for cpp test * update port number * [Docker] update docker image (#575) * update docker image * specify lint version * rm torch import from unified tests * remove pytorch-specific test_function * fix unittest * fix * fix unittest backend bug in converting tensor to numpy array * fix * mxnet version * [BUGFIX] fix for MXNet 1.5. (#552) * remove clone. * turn on numpy compatible. * Revert "remove clone." This reverts commit 17bbf76ed72ff178df6b3f35addc428048672457. * revert format changes * fix mxnet api name * revert mistakes in previous revert * roll back CI to 20190523 build * fix unittest * disable test_shared_mem_store.py for now * remove mxnet/test_specialization.py * sync win64 test script * fix lowercase * missing backend in gpu unit test * transpose to get forward graph * pass update all * add sanity check * passing test_specialization.py * fix and pass test_function * fix check * fix pytorch softmax * mxnet kernels * c++ lint * pylint * try * win build * fix * win * ci enable gpu build * init submodule recursively * backend docstring * try * test win dev * doc string * disable pytorch test_nn * try to fix windows issue * bug fixed, revert changes * [Test] fix CI. (#586) * disable unit test in mxnet tutorial. * retry socket connection. * roll back to set_np_compat * try to fix multi-processing test hangs when it fails. * fix test. * fix. * doc string * doc string and clean up * missing field in ctypes * fix node flow schedule and unit test * rename * pylint * copy from parent default context * fix unit test script * fix * demo bug in nodeflow gpu test * [Kernel][Bugfix] fix nodeflow bug (#604) * fix nodeflow bug * remove debug code * add build gtest option * fix cmake; fix graph index bug in spmv.py * remove clone * fix div rhs grad bug * [Kernel] Support full builtin method, edge softmax and unit tests (#605) * add full builtin support * unit test * unit test backend * edge softmax * apply edge with builtin * fix kernel unit test * disable mxnet test_shared_mem_store * gen builtin reduce * enable mxnet gpu unittest * revert some changes * docstring * add note for the hack * [Kernel][Unittest][CI] Fix MXNet GPU CI (#607) * update docker image for MXNet GPU CI * force all dgl graph input and output on CPU * fix gpu unittest * speedup compilation * add some comments * lint * add more comments * fix as requested * add some comments * comment * lint * lint * update pylint * fix as requested * lint * lint * lint * docstrings of python DGL kernel entries * disable lint warnings on arguments in kernel.py * fix docstring in scheduler * fix some bug in unittest; try again * Revert "Merge branch 'kernel' of github.com:zzhang-cn/dgl into kernel" This reverts commit 1d2299e68b004182ea6130b088de1f1122b18a49, reversing changes made to ddc97fbf1bec2b7815c0da7c74f7ecb2f428889b. * Revert "fix some bug in unittest; try again" This reverts commit ddc97fbf1bec2b7815c0da7c74f7ecb2f428889b. * more comprehensive kernel test * remove shape check in test_specialization |
||
|
|
01a4cc5b7b |
[Graph] Add API to convert graph to simple graph (#587)
* to simple * WIP: multigraph flag * graph index refactor; pass basic testing * graph index refactor; pass basic testing * fix bug in to_simple; pass torch test * fix mx utest * fix example * fix lint * fix ci * poke ci * poke ci * WIP * poke ci * poke ci * poke ci * change ci workspace * poke ci * poke ci * poke ci * poke ci * delete ci * use enum for multigraph flag |
||
|
|
5492994251 |
[CI] Fix CI bugs (#592)
* new jenkins script * fix ci * poke ci * new config * new config * new config * poke ci * poke ci * poke ci * poke ci * poke ci * poke ci * poke ci * update docker image; poke ci * poke ci * poke ci * poke ci * poke ci * poke ci * poke ci * poke ci * poke ci * poke ci * poke ci * poke ci * update image * update image * fix * Windows CI support * typo * typo*2 * missed sh * typo*3 * missed dir |
||
|
|
16af6ebd3b |
[Test] Add cpp test to CI (#567)
* add cpptest to ci * try windows * Update Jenkinsfile * Update Jenkinsfile * Update Jenkinsfile * Update task_cpp_unit_test.bat * Change localhost to 127.0.0.1 * windows socket gtest * lint * Update task_cpp_unit_test.bat * fix batch script * export all symbols * Update Jenkinsfile * compile once * try mxnet compact |
||
|
|
605b51857e |
[Refactor] Immutable graph index (#543)
* WIP * header * WIP .cc * WIP * transpose * wip * immutable graph .h and .cc * WIP: nodeflow.cc * compile * remove all tmp dl managed ctx; they caused refcount issue * one simple test * WIP: testing * test_graph * fix graph index * fix bug in sampler; pass pytorch utest * WIP on mxnet * fix lint * fix mxnet unittest w/ unfortunate workaround * fix msvc * fix lint * SliceRows and test_nodeflow * resolve reviews * resolve reviews * try fix win ci * try fix win ci * poke win ci again * poke * lazy multigraph flag; stackoverflow error * revert node subgraph test * lazy object * try fix win build * try fix win build * poke ci * fix build script * fix compile * add a todo * fix reviews * fix compile |
||
|
|
2ade0ef96d |
[Hotfix] fix cython bug (#442)
* fix cython bug * fix * fix |
||
|
|
565f0c88fc |
[WIP] [NN] Refactor NN package (#406)
* refactor graph conv * docs & tests * fix lint * fix lint * fix lint * fix lint script * fix lint * Update * Style fix * Fix style * Fix style * Fix gpu case * Fix for gpu case * Hotfix edgesoftmax docs * Handle repeated features * Add docstring * Set default arguments * Remove dropout from nn.conv * Fix * add util fn for renaming * revert gcn_spmv.py * mx folder * fix wierd bug * fix mx * fix lint |
||
|
|
e19cd62ecd |
[Test] Unify tests for different backends (#333)
* test basics * batched graph & filter, mxnet filter fix * frame and function; bugfix * test graph adj and inc matrices * fixing start = 0 for mxnet * test index * inplace update & line graph * multi send recv * more tests * oops * more tests * removing old test files; readonly graphs for mxnet still kept * modifying test scripts * adding a placeholder for pytorch to reserve directory * torch 0.4.1 compat fixes * moving backend out of compute to avoid nose detection * tests guide * mx sparse-to-dense/sparse-to-numpy is buggy * oops * contribution guide for unit tests * printing incmat * printing dlpack * small push * typo * fixing duplicate entries that causes undefined behavior * move equal comparison to backend |
||
|
|
4bd4d6e348 |
[Lint] Pylint (#330)
* fix lint for graph_index.py * pylint for base.py * pylint for batched_graph.py * pylint for frame.py; simplify and fix bugs in frame when index is slice type * pylint for graph.py * pylint for immutable_graph_index.py * pylint for init.py * pylint for rest files in root package * pylint for _ffi package * pylint for function package * pylint for runtime package * pylint for runtime.ir package * add pylint to ci * fix mx tests * fix lint errors * fix ci * fix as requested * fix lint |
||
|
|
75e2af7993 |
[CI] Jenkins on Windows builds (#324)
* Jenkins build & test on Windows * oops * still running nohup on Windows slaves * ooops again * squishing vcvars and cmake * another try * reverting back * --user * switching to msbuild * made the graph size in cache testing bigger * put commands into script files * oooops |
||
|
|
cd907cddfa |
[Tutorial] Add sse tutorial & MXNet Tutorial CI (#252)
* add sse tutorial * add mxnet tutorial ci * fix ci * fix ci * fix ci * fix ci * fix ci * fix ci * Fix ci * Fix ci * Fix ci * fix ci * fix ci * fix ci * fix ci * fix ci * fix ci * Fix CI Fix CI image * permission fix * fix a bug in the code. * small fix * fix doc * fix ci * shorten the iters * fix * remove extra file * add load_backend api to dynamically switch to another backend * try fix * fix tutorial * fix tutorial * fix bug in tutorial |
||
|
|
7cb50072a4 |
[Doc][Model] New Capsule Tutorial & Example (#143)
* new capsule tutorial * capsule for new API * fix deprecated API * New tutorial and example * investigate gc problem * add viz code * new capsule tutorial * remove ipynb * move u_hat * add link * add requirements.txt * remove ani.save * update ci to install requirements * add graphviz |
||
|
|
a95459e3a2 |
[CI] Improved CI (#141)
* change ci * update ci * update ci * update ci * update ci * update ci * update ci * update ci * update ci * update ci * update ci * update ci * update ci * update ci * update ci * update ci * nx package * update ci * update ci * update ci * fix * mx dockerfile by zhengda * python3.6->3.5 * update ci image * add tutorial test * fix ci * fix ssl problem * minor change * small fix on traversal utest * fix syntax * add matplotlib in image * fix * update ci * update ci |
||
|
|
68ec624782 |
[API][Doc] API change & basic tutorials (#113)
* Add SH tutorials * setup sphinx-gallery; work on graph tutorial * draft dglgraph tutorial * update readme to include document url * rm obsolete file * Draft the message passing tutorial * Capsule code (#102) * add capsule example * clean code * better naming * better naming * [GCN]tutorial scaffold * fix capsule example code * remove previous capsule example code * graph struc edit * modified: 2_graph.py * update doc of capsule * update capsule docs * update capsule docs * add msg passing prime * GCN-GAT tutorial Section 1 and 2 * comment for API improvement * section 3 * Tutorial API change (#115) * change the API as discusses; toy example * enable the new set/get syntax * fixed pytorch utest * fixed gcn example * fixed gat example * fixed mx utests * fix mx utest * delete apply edges; add utest for update_edges * small change on toy example * fix utest * fix out in degrees bug * update pagerank example and add it to CI * add delitem for dataview * make edges() return form that is compatible with send/update_edges etc * fix index bug when the given data is one-int-tensor * fix doc |
||
|
|
c9e3c6589f | Merge branch 'cpp' of github.com:zzhang-cn/dgl into cpp | ||
|
|
820c6b9ed6 | Add lint script and fix cpplint errors | ||
|
|
49ea781cc3 |
Improve CI (#92)
* gcn example test code * GPU test * use python3 * use functions * gpu test use functions * remove root * use one script to run both cpu and gpu tests |