3adbfa1812
[Performance] Use segment operators for graph readout. ( #2361 )
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* upd
* upd
* update
* upd
* upd
* upd
* fix
* lint
* lint
* pylint
* doc
2020-11-23 01:45:33 +08:00
45e3e9af2c
[WIP] Misc Fix ( #2359 )
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* Update
* Update
* Update
2020-11-19 23:54:55 +08:00
fe4ada23f9
Update knowledge_graph.py ( #2329 )
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The l in "bool" is lost.
Co-authored-by: Zihao Ye <expye@outlook.com >
2020-11-10 17:33:55 +08:00
812f597096
Update appnpconv.py ( #2324 )
2020-11-10 15:37:30 +08:00
4fb0241bfb
[CUDA] Add CUDA11 support ( #2308 )
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* add support for cuda 11
* fix inc bug in pytorch 1.8
* poke ci
* fix
* small fix
* try fix
* try fix
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2020-11-07 22:16:51 +08:00
6eda605ccd
[BugFix][Dataloading] Disable AsyncTransferer copying to anywhere but the GPU ( #2323 )
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* Disable copying for anywhere but the GPU
* Remove unused import and remove references to transferring from the GPU from the docs
* Skip gpu test in cpu mode
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2020-11-07 21:34:54 +08:00
5f19876358
[Bugfix] GINDataset check whether labels are all valid ( #2319 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* check whether the original labels are valid
* add unit test for gin dataset
* bug of asscalar in mxnet<=1.6
* mxnet<=1.6 asscalar requires ndarray to be shaped (1,)
* skip gpu while testing datasets
* Update test_data.py
* test of gin dataset takes too much time
2020-11-05 09:35:10 +08:00
c6890c231a
[Performance] In HeteroNodeView, build arange on target device, instead of on CPU and copying it ( #2266 )
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* Build arange on target device
* Utilize arange device in viewpy:HeteroNodeView.__call__
* Work around uint64 error in TF to_dlpack
* Restore else clause
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Da Zheng <zhengda1936@gmail.com >
2020-11-02 14:03:26 -08:00
d453d72dd1
[Doc][Dataloading] Expand documentation of AsyncTransferer ( #2313 )
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* Update docs
* Make non-default streams non-blocking
2020-11-02 12:28:30 -08:00
f673fc2553
[Dataloading] Add class for copying tensors to/from the GPU on a non-default stream ( #2284 )
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* Add async transferer class
* Add async ndarray copy interface
* Add python bindings
* Fix comment
* Add python class
* Fix linting issues
* Add python unit test
* Update python interface
* move async_transferer to cuda only directory
* Fix linting issue
* Move out of contrib
* Add doc strings
* Move test compute from backend
* Update comment
* Fix test naming
* Fix argument usage
* Wrap/unwrap backend parameters
* Move to dataloading
* Move to 'dataloading'
* Make GPU/CPU compatible
* Fix unit tests
* Add docs
* Use only backend interface for datamovement in unit test
2020-10-30 07:29:06 -07:00
269983dbcd
[Fix] typo ( #2265 )
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* upd
* upd
* upd
* upd
* upd
* fix OpenMP compatibility issues
* typo
* partition
* misc
* fix typo
* num_parts=1
* import torch
* long
* print info
* print info
* print info
* upd
* remove debug code
* revert partition.py
* fix cut count
* fix cut count
* Revert "fix cut count"
This reverts commit 10926b4fd48f45c8f1ddb58be7db6c22e653effd.
* Revert "fix cut count"
This reverts commit 76465283bef093a2b4209ad70dd15d2437b2ec8a.
* type of deprecate
* typo in deprecate info
* fix typo
* use cv for partitioning
* CE
* no message
* revert
* typo
* no message
* no message
* no message
* practice
* dmlc-core
* DGLGraph
Co-authored-by: yzh119 <expye@outlook.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2020-10-29 23:05:36 +08:00
da9f14dff3
Fix typos ( #2285 )
2020-10-19 12:24:34 -07:00
8a4520d55a
[Bugfix][Performance] Fix Column to copy 'self.index' to location of 'self.storage' only on read, and use kwargs. ( #2267 )
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* Pass framework arguments to copy of frames
* Copy for subframe
* Fix mismatched contexts
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2020-10-09 09:58:31 -07:00
8bbc84e04f
[bugfix] Fix crash due to unfound attribute ( #2262 )
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An unexpected `AttributeError` exception is launched whenever the user defines `save_dir` on `DGLDataset` instantiation and uses `self._save_dir` within `has_cache` method.
This commit fixes the issue.
2020-10-09 09:44:38 +08:00
c341520d5b
[bugfix] Fix the behavior of min/max reducer for 1-dim dta. ( #2250 )
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* udp
* add test
* udp
* fix mxnet
2020-09-29 17:27:16 +08:00
6b0d42db15
Fix typo ( #2235 )
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Co-authored-by: Chao Ma <mctt90@gmail.com >
2020-09-25 16:40:22 +08:00
25a8e3f181
Fix segment_reduce() ignoring tailing 0 segments ( #2228 )
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Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2020-09-24 15:07:45 +08:00
40caf1ab50
[HeteroGraph] Fix the failure of apply_nodes when the input function changes feature size for all nodes ( #2223 )
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* Fix
* Fix
2020-09-24 08:54:28 +08:00
49e96970e2
[Doc] fix typos in PyTorch DataLoaders ( #2216 )
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* fix doc
* fix doc
2020-09-20 13:21:05 +08:00
0b00562d1f
Update gindt.py ( #2212 )
2020-09-18 19:49:50 +08:00
f3f646bbfd
[Doc and User Guide] Minor Fix ( #2205 )
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* Fix doc and user guide
* Update heterograph.py
Co-authored-by: Ubuntu <ubuntu@ip-172-31-13-9.us-west-2.compute.internal >
2020-09-17 03:01:12 +08:00
76d66fd35d
[Bug] Fix dtype mismatch in EdgeDataLoader on Windows ( #2188 )
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* fix node and edge dataloader on windows
* fix distributed
2020-09-13 18:25:05 +08:00
877101a96b
[Doc] Update Doc for UDFs ( #2131 )
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* Update Doc for UDFs
* add degree bucketing explanation
* Update udf.rst
* Update
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2020-09-13 04:57:06 +08:00
3234189b60
Fix hdfs error when writing big data ( #2186 )
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* update dmlc-core to latest
* fix hdfs
2020-09-12 23:58:36 +08:00
4dae26a1fc
[Doc] Fix typo in dataloading.negative_sampler ( #2177 )
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* fix dataloading docs
* fix another
2020-09-11 19:39:48 +08:00
7d8522a29f
[Bug] fix cumsum on an empty array with prepend_zero returning an empty array ( #2179 )
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* fix cumsum
* udp
Co-authored-by: Zihao <expye@outlook.com >
2020-09-11 18:23:44 +08:00
8a227bfa03
[Bugfix] fix TUDataset labelling issue ( #2165 ) ( #2173 )
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* [Bugfix] fix TUDataset labelling issue (#2165 )
* [Bugfix] fix TUDataset labelling issue (dmlc#2165)
* update docstring according to discussion
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2020-09-11 17:05:24 +08:00
a102db23bf
[Dataset] CoraFull dataset remove redundant reference ( #2172 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* Update gnn_benckmark.py
2020-09-11 15:15:06 +08:00
8f4594074b
[Hotfix] Fix degree bucket edge ordering ( #2176 )
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* fix degree bucket edge ordering
* unit test
* fix
2020-09-11 14:16:52 +08:00
cbd55eb12f
[performance] Batch DGLGraph in C++ end. ( #2155 )
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* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* fix
* upd
* upd
* upd
* upd
* fix
* upd
Co-authored-by: VoVAllen <jz1749@nyu.edu >
2020-09-11 02:54:27 +08:00
ac570c1dae
[Bugfix] Fix flatten not wrapping unit graph ( #2170 )
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* fix flatten not wrapping unit graph
* fix doc
2020-09-10 17:41:52 +08:00
5f44a4efce
Fix #1453 again ( #2169 )
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* Fix reincarnation of #1453
* fix
2020-09-10 15:43:21 +08:00
b10b541c11
fix multiple docstring inconsistencies ( #2167 )
2020-09-10 11:03:34 +08:00
45b610c49a
fix edge_softmax ( #2160 )
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Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2020-09-09 14:19:43 +08:00
0cf99be378
hotfix ( #2163 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal >
2020-09-09 11:00:31 +08:00
c9c6171b9f
Revert "[Feature] Basic utils to handle raw data features ( #2102 )" ( #2147 )
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This reverts commit 33a8bb93bfwmjlyjemaine@gmail.com >
2020-09-08 10:33:59 +08:00
ac5c79cdb8
[Bug] Fixes issues in feature pickling and transmission for subgraphs and blocks ( #2139 )
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* bug fixes
* remove __deepcopy__; not sure what the behavior should be
* lint
* skip gpu test
* fix
* fix dist dataloader
* add comment
* remove assert
2020-09-03 12:48:59 +08:00
9eaace9216
rename create_format_ to create_formats_ ( #2126 )
2020-08-29 22:49:27 +08:00
642bdbaf04
[Traversal] Fall back to CPU for Graph Traversal as a Workaround ( #2115 )
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* workaround
* Allow Test for Traversal on GPU Graphs
Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal >
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2020-08-29 16:34:31 +08:00
0435b74c48
[Hotfix] Fix layer norm ( #2119 )
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* hotfix
* Fix Layer Norm
Co-authored-by: Ubuntu <ubuntu@ip-172-31-87-240.ec2.internal >
2020-08-28 11:20:33 +08:00
33a8bb93bf
[Feature] Basic utils to handle raw data features ( #2102 )
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* add feature utils and add test for feature norm
* Add docstring and test
* upd
* dis able some test
* Update
* update doc string
* update
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal >
2020-08-27 11:36:39 +08:00
b2ac89f2e4
[Bugfix] Fix #2076 ( #2111 )
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* Fix
* Revert "Fix"
This reverts commit 2627630daee33a709a70ef87e1ad9930772430a8.
* Fix
* upd
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal >
2020-08-27 00:23:31 +08:00
51ba662169
Fix GINDT and #2087 ( #2103 )
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* fix gindt
* ff
* fix
* minor fix
* fix
2020-08-26 15:53:45 +08:00
2ce426d956
[Bug] add_edges() crashes if the input tensor is empty ( #2100 )
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* [Bug] add_edges() crashes if the input tensor is empty
* lint
* fix
2020-08-24 16:04:41 +08:00
bcff14ccde
[Dco] Remove preface in guide ( #2096 )
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* fix
* fix
2020-08-23 10:27:15 +08:00
7ead28c315
[Doc] [NN] Fix message and nn user guide link ( #2090 )
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* fix user guide link
* some fix on tensorflow
2020-08-22 00:18:22 +08:00
cd204a4ac9
[Distributed] Use barrier instead of sleep in DistDataloader ( #2086 )
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* use barrier instead of sleep
* lint
2020-08-21 18:01:09 +08:00
ad8530a4dc
[Readme] 0.5.0 release and bump to new prerelease versions ( #2082 )
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* [Readme] 0.5.0 release and bump to new prerelease versions
* bump version
2020-08-21 12:29:17 +08:00
f13b9b6212
[Doc] Scan the API docs and make many changes ( #2080 )
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* WIP: api
* dgl.sampling, dgl.data
* dgl.sampling; dgl.dataloading
* sampling packages
* convert
* subgraph
* deprecate
* subgraph APIs
* All docstrings for convert/subgraph/transform
* almost all funcs under dgl namespace
* WIP: DGLGraph
* done graph query
* message passing functions
* lint
* fix merge error
* fix test
* lint
* fix
Co-authored-by: Quan Gan <coin2028@hotmail.com >
2020-08-20 23:26:49 +08:00
35e25914ad
Update version check of PyTorch to 1.5 ( #2079 )
2020-08-20 21:33:29 +08:00
Zihao Ye