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536 次代码提交

作者 SHA1 备注 提交日期
Mufei Li f00cd6efbd [Utils] Edge and LINKX homophily measure (#5382) 
* Update

* lint

* lint

* r prefix

* CI

* lint

* skip TF

* Update

* edge homophily

* linkx homophily

* format

* skip TF

* fix test

* update

* lint

* lint

* review

* lint

* update

* lint

* update

* CI

---------

Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>
 2023-03-03 16:58:20 +08:00
czkkkkkk 34d6475490 [Doc] Fix typos in minibatch-edge.rst (#5308) 2023-03-02 11:26:35 +08:00
Zhiteng Li a53ecd229b [Dataset] Add CLUSTER dataset (#5389) 
* add CLUSTER dataset

* refine according to dongyu's comments

---------

Co-authored-by: rudongyu <ru_dongyu@outlook.com>
 2023-03-01 16:36:12 +08:00
Mufei Li fcf5ad5f49 [Utils] Node homophily measure (#5376) 
* Update

* lint

* lint

* r prefix

* CI

* lint

* skip TF

* Update

---------

Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>
 2023-02-24 14:26:02 +08:00
Kunal Mukherjee 45153fc078 [Model] Implemented SubgraphX Explainer for Homogeneous graph (#5315) 
* subgraphx commit

* nits

* newline eof added

* lint fix

* test script updated to use default values

* lint fix

* graphs that are used for test cases are updated to a small graph

* lint formatted

* test paramter adj to complete the test under 20s

* lint fixes

---------

Co-authored-by: kxm180046 <kxm180046@utdallas.edu>
 2023-02-23 12:50:31 +08:00
Tingyu Wang bcf9923b32 [Model] Add dgl.nn.CuGraphSAGEConv model (#5137) 
* add CuGraphSAGEConv model

* fix lint issues

* update model to reflect changes in make_mfg_csr(), move max_in_degree to forward()

* lintrunner

* allow reset_parameters()

* remove norm option, simplify test

* allow full graph fallback option, add example

* address comments

* address reviews

---------

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2023-02-22 13:43:28 +08:00
Hongzhi (Steve), Chen dce899190e [Misc] Auto-reformat multiple python folders. (#5325) 
* auto-reformat

* lintrunner

---------

Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>
 2023-02-20 10:09:22 +08:00
ZhenyuLU_Heliodore 5598503aa0 [Transform] Add SVDPE Transform Module (#5121) 
* add SVD positional encoding

* modify importing module

* Fixed certain problems

* Change the test unit to a nonsigular one

* Fixed typo and make accord with lintrunner

* added svd_pe into dgl.rst

* Modified dgl.rst
 2023-02-08 12:29:03 +08:00
Minjie Wang 8230640248 Update index.rst (#5233) 2023-01-30 14:15:52 +08:00
Augusto Berndt 94d3c6cb9f [Doc] Fix a typo in dgl.dataloading.rst (#5211) 
changing privimitive to primitive
 2023-01-20 14:23:26 +08:00
Hongzhi (Steve), Chen 17fad103b5 update (#5215) 
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-20 11:25:53 +08:00
Rhett Ying a844d16ec0 [Doc] add sphinxemoji 2023-01-20 10:58:22 +08:00
Minjie Wang c7e3754d38 [Doc] fix colab tutorials (#5205) 
* Created using Colaboratory

* Created using Colaboratory

* Created using Colaboratory

* Created using Colaboratory

* minor tweak

* minor fix

* Created using Colaboratory

* Update notebooks/sparse/quickstart.ipynb
 2023-01-19 20:53:51 +08:00
Hongzhi (Steve), Chen 050798e9aa Update dgl.sparse rst. (#5201) 
* dgl

* blabla

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-19 12:22:48 +08:00
Rhett Ying 535f4b29e3 [Doc] enable note book exec for pytorch backend 2023-01-19 12:19:05 +08:00
Rhett Ying 995c1913aa Update conf.py 2023-01-18 23:26:37 +08:00
Rhett Ying 11d7994708 [Doc] disable nbsphinx exec 2023-01-18 22:52:16 +08:00
Rhett Ying aba0506c81 Update conf.py 2023-01-18 22:29:55 +08:00
Rhett Ying 395b89e4b1 [Doc] add nbsphinx for pytorch only 2023-01-18 21:40:49 +08:00
Rhett Ying ebca7860f0 [Doc] disable include/exclude_patterns 2023-01-18 17:06:53 +08:00
Rhett Ying 6b3891cb13 Update conf.py 2023-01-18 15:07:47 +08:00
Rhett Ying 8c7d8bd878 [Doc] exclude some patterns 2023-01-18 14:15:21 +08:00
Rhett Ying f7573c6de4 [Doc] run tutorials only in pytorch backend 2023-01-18 13:43:31 +08:00
Rhett Ying fcf9663e69 [Doc] fix regular expression for include/exclude_patterns 2023-01-18 13:04:36 +08:00
Rhett Ying 84fccf5793 [Doc] add include/exclude_patterns when build sphinx (#5195) 2023-01-18 11:59:45 +08:00
Rhett Ying 2331feacca Update conf.py 2023-01-17 17:50:51 +08:00
Rhett Ying ad3b09f189 Update conf.py 2023-01-17 16:29:39 +08:00
Rhett Ying 491237aa16 [Doc] ignore tutorial files for non-pytorch backend (#5191) 2023-01-17 16:09:36 +08:00
Minjie Wang 1a6dd73552 [Doc] other colab tutorials (#5189) 
* Created using Colaboratory

* Created using Colaboratory

* Created using Colaboratory

* add link

* Created using Colaboratory

* add link
 2023-01-17 14:53:48 +08:00
Minjie Wang 2c143dafab [Doc] Colab tutorial for graph transformer (#5188) 
* Created using Colaboratory

* add gt nblink

* Created using Colaboratory

* update

* Add nblink
 2023-01-17 14:28:01 +08:00
Minjie Wang 2a8062311f [Doc] Colab tutorial for graph diffusion (#5185) 
* Created using Colaboratory

* add diffusion notebook

* update
 2023-01-17 14:26:19 +08:00
Minjie Wang 0868f1796d [Doc] sparse lib tutorial and colab links (#5181) 
* Created using Colaboratory

* nbsphinx & nblink

* Created using Colaboratory

* update notebook

* minor update
 2023-01-16 18:59:19 +08:00
czkkkkkk b5c5c860f6 [Sparse] Refactor matmul interface. (#5162) 
* [Sparse] Refactor matmul interface.

* Update
 2023-01-13 20:08:40 +08:00
Hongzhi (Steve), Chen 9334421d2b [Sparse] Rename as_sparse to to_sparse, dense to to_dense. (#5170) 
* as_sp_to_sp

* dense

* revert_mock

* test

* revert

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-13 17:03:20 +08:00
Rhett Ying 85bd0cdeca [Doc] remove deprected Node/EdgeDataLoader (#5171) 2023-01-13 13:22:16 +08:00
Hongzhi (Steve), Chen f1ed5d6de7 blabla (#5152) 
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-11 20:21:55 +08:00
Hongzhi (Steve), Chen 41b4180950 Polish (#5149) 
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-11 19:31:08 +08:00
Hongzhi (Steve), Chen 1a33ee99d3 [Sparse] Update doc string of element-wise ops for DiagMatrix and SparseMatrix. (#5136) 
* doc

* minor

* black

* no-lint

* reorg

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-11 12:08:24 +08:00
Hongzhi (Steve), Chen c5119480f2 [Sparse] Remove unnecessary API exposure. (#5135) 
* remove unnecessary exposure.

* remove_add_power

* remove_warning

* reorder

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-11 11:47:14 +08:00
peizhou001 56ffb650fe [API Deprecation]Deprecate contrib module (#5114) 2023-01-06 20:16:01 +08:00
Mufei Li c8bc558880 [Sparse] Remove SparseMatrix.indices and add device/dtype conversions (#5108) 
* Update

* Update

* Update

* lint

* lint

* Update

* CI

* Update diag_matrix.py

* Update sparse_matrix.py

* Update sparse_matrix.py

Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>
Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com>
 2023-01-06 17:37:13 +08:00
Mufei Li 9169fc3541 [Sparse] Polish sparse matrix creation functions (#5093) 
* update

* Update

* Update

* Update

* Update

Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>
 2023-01-03 22:59:57 +08:00
ZhenyuLU_Heliodore cd817a1a00 [NN] Add SpatialEncoder and SpatialEncoder3d (#4991) 
* Add SpatialEncoder and SpatialEncoder3d

* Optimize the code execution efficiency

* Fixed certain problems according to Dongyu's suggestions.

* Fix an error about probability of division by zero in PathEcoder; Change certain designs in SpatialEncoder

* Fix a typo

* polish the docstring

* fix doc

* lint

Co-authored-by: Ubuntu <ubuntu@ip-172-31-14-146.ap-northeast-1.compute.internal>
Co-authored-by: rudongyu <ru_dongyu@outlook.com>
 2023-01-03 14:02:14 +08:00
Xin Yao ce378327c7 fix bf16 tests (#5089) 2022-12-29 21:36:39 +08:00
Mufei Li 37bd092587 [Sparse] Namespace migration and doc update (#5088) 
* update

* lint

* lint

* comments

Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>
 2022-12-29 20:34:29 +08:00
Rhett Ying 311bd88a04 [Doc] update doc page for distributed partition pipeline (#5064) 
* [Doc] update doc page for distributed partition pipeline

* update
 2022-12-26 23:11:32 +08:00
Zhiteng Li 279e2e8fba Add Graph Transformer Layer (Dense Computation) (#4959) 
* Add GraphTransformerLayer (dense)

* beautify the python code with black

* refine according to mufei's comments

* fix AttributeError in unit test

* rename module as GraphormerLayer

* fix name issue

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2022-12-07 16:23:14 +08:00
Muhammed Fatih BALIN 84a12cf6a1 [Doc] Add Labor Sampler documentation (#4986) 
Co-authored-by: Xin Yao <xiny@nvidia.com>
 2022-12-07 08:42:26 +08:00
ZhenyuLU_Heliodore 93ecfa313a [NN] Add PathEncoder (#4956) 
* Add PathEncoder to transformer.py

* add blank line at the and

* rename variabl sp to shortest_path

* Fixed corresponding problems

* Fixed certain bugs when running on CUDA

* changed clamp min from 0 to 1

Co-authored-by: Ubuntu <ubuntu@ip-172-31-14-146.ap-northeast-1.compute.internal>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2022-12-05 13:47:51 +08:00
peizhou001 611393021a [API Deprecation] Remove candidates in DGLGraph (#4946) 2022-12-01 16:41:53 +08:00