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Zahi Kakish 21733e903b Documentation equation syntax fix for EGATConv (#5284) 
Some weird formatting occurred in the documentation for EGATConv, so this quick commit should fix that.

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2023-02-13 14:58:11 +08:00
Quan (Andy) Gan f62669b05c enable sparse on windows and mac (#5277) 
* enable sparse on windows and mac

* that was stupid

* let's see what's going on..

* [Sparse] Fix the import error on Mac OS.

When using template functions that are defined in source files from DGL,
the loader of MacOS somehow cannot find their definitions. This fix simply
avoids depending on template functions from DGL headers.

With this fix, the sparse tests all pass on the MAC environment.

* ok this is the problem

* make errors clearer

* uh

* test

* Update __init__.py

* disabling ddp on windows

---------

Co-authored-by: czkkkkkk <zekucai@gmail.com>
 2023-02-13 13:16:17 +08:00
Rhett Ying 465828cdbc [CI] pre-install required py packages in image for unit/tutorial test (#5276) 2023-02-10 19:11:30 +08:00
Nicolas Castet af79e54049 [Bugfix] Fix Column.record_stream(...) for unmaterialized tensors (#5240) 
* Fix Column.record_stream(...) for unmaterialized tensors

* lint

* Record streams for indices on non-materialized columns

* add docstring

* fix for cpu index

* Record also stream on storage

* Always call self.storage.record_stream when storage is on GPU

* fix lint

---------

Co-authored-by: Xin Yao <xiny@nvidia.com>
 2023-02-10 14:36:46 +08:00
Rhett Ying d49a3019de [Doc] update --part_config 2023-02-10 11:18:02 +08:00
Rhett Ying ed3888dd74 [Doc] update --part_config 2023-02-10 11:17:00 +08:00
peizhou001 f0b7cc96bd [Performance]Add concurrent cpu id hashmap (#5241) 
Add Id hash map
 2023-02-09 08:51:08 +08:00
ZhenyuLU_Heliodore 5598503aa0 [Transform] Add SVDPE Transform Module (#5121) 
* add SVD positional encoding

* modify importing module

* Fixed certain problems

* Change the test unit to a nonsigular one

* Fixed typo and make accord with lintrunner

* added svd_pe into dgl.rst

* Modified dgl.rst
 2023-02-08 12:29:03 +08:00
kylasa aa42aaeb9f [DistDGL][Lintrunner]Lintrunner for tools directory (#5261) 
* lintrunner patch for gloo_wrapper.py

* lintrunner changes to the tools directory.
 2023-02-03 09:56:47 -08:00
Hongzhi (Steve), Chen 8b47bad5ba [Misc] Remove unnecessary clean up before build to accelerate incremental build. (#5267) 
* remove unnecessary clean up.

* more

---------

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-02-03 15:11:16 +08:00
Rhett Ying eff16b6116 [Dist] add input_dir for parmetis preprocess (#5232) 
* [Dist] add input_dir for parmetis preprocess

* add support for parquet

* update parmetis_wrapper accordingly
 2023-02-02 09:44:35 +08:00
Rhett Ying cf67829998 [Doc] fix docstring issue (#5260) 2023-02-01 16:13:43 +08:00
Hongzhi (Steve), Chen 77bcf6040e Update pip install info for tutorials. (#5236) 
* update pip install info.

* update

* clarify the version

* blabla

* blabl

---------

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-02-01 15:17:40 +08:00
Hongzhi (Steve), Chen b3308ae795 Cleanup mock_sparse related code. (#5230) 
* remove_mock_sparse_example

* mock_sparse_test

* remove_mock_sparse

---------

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-02-01 15:17:14 +08:00
Minjie Wang 829ce109f1 Update hgnn.ipynb (create by colab) 2023-01-30 20:14:01 +08:00
Rhett Ying 389b8eb928 [DOC] replace emoji with Y/N to fix display issue (#5235) 2023-01-30 15:14:19 +08:00
Minjie Wang 8230640248 Update index.rst (#5233) 2023-01-30 14:15:52 +08:00
Muhammed Fatih BALIN 5888d9d1b6 [Doc] Labor sampling improvement (#5221) 
* [Doc] Labor sampling improvement

When importance sampling option is used, the returned blocks include edge weights that need to be used during the message passing operation. So, I am including this in the documentation.

* Add documentation to weighted sampling case also
 2023-01-29 21:32:09 +08:00
Hongzhi (Steve), Chen 4b5fa83bcd [Sparse] Swap examples of from_coo and spmatrix. (#5228) 
* swap-example

* size-shape

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-27 10:51:57 +08:00
Hongzhi (Steve), Chen 387ae76df3 [Doc] Update with Mono font to keep doc string consistent. (#5213) 
* part1

* more

* more

* spmatrix

* code

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-23 09:48:07 +08:00
Hongzhi (Steve), Chen d61012e094 Change example code for indices creation from two line to one line to avoid test break. (#5222) 
* add_backslash

* fix

* more

* blabla

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-23 02:21:57 +08:00
Minjie Wang 0bdc437b52 [Doc] Update colab tutorials with spmatrix (#5220) 
* Created using Colaboratory

* Created using Colaboratory

* Created using Colaboratory

* Created using Colaboratory

* Created using Colaboratory

* Created using Colaboratory
 2023-01-20 17:44:58 +08:00
Hongzhi (Steve), Chen fbbe6d61c9 [Doc] Update all canonical creation example from from_coo to spmatrix. (#5208) 
* fix

* sddmm

* change

* blabla

* blabla

* revert

* newpr

* tocuda

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-20 17:44:07 +08:00
Hongzhi (Steve), Chen 30fb03a6bc Update example with spmatrix. (#5219) 
* update

* graph

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-20 15:39:55 +08:00
Quan (Andy) Gan abfc4c31f5 [Sparse] Clarification on dimensions for sparse reduction and softmax docstrings (#5197) 
* fix sparse reduce and softmax doc

* Update softmax.py
 2023-01-20 14:31:33 +08:00
Augusto Berndt 94d3c6cb9f [Doc] Fix a typo in dgl.dataloading.rst (#5211) 
changing privimitive to primitive
 2023-01-20 14:23:26 +08:00
Hongzhi (Steve), Chen 7a2dd5ae96 32 (#5216) 
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-20 11:26:26 +08:00
Hongzhi (Steve), Chen 17fad103b5 update (#5215) 
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-20 11:25:53 +08:00
Rhett Ying a844d16ec0 [Doc] add sphinxemoji 2023-01-20 10:58:22 +08:00
Hongzhi (Steve), Chen c89ee05f2d examples (#5214) 
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-20 10:46:12 +08:00
Rhett Ying 5337d7b2bc [Doc] fix math and link display issue (#5212) 2023-01-20 10:45:11 +08:00
czkkkkkk 20ce9be2c6 [Sparse] Add spmatrix creation function (#5209) 
* [Sparse] Add spmatrix creation function

* Update

* Update sparse_matrix.py

* Update sparse_matrix.py

Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com>
 2023-01-20 09:49:49 +08:00
Rhett Ying 6d28052479 [Doc] revert change in link 2023-01-20 08:42:12 +08:00
Rhett Ying cccbb9129a [Doc] revert ** removal from table 2023-01-20 08:41:06 +08:00
Rhett Ying 6324351b4f [Doc] fix link and table display issue 2023-01-20 08:35:55 +08:00
czkkkkkk d1e5700676 [Sparse] Polish the docstring of sparse_matrix.py (#5202) 
* [Sparse] Polish the docstring of sparse_matrix.py

* Update

* Update

* Update

* Update
 2023-01-20 00:49:20 +08:00
Quan (Andy) Gan f145097f9a [Release] Conda/CMake changes for 1.0 release (#5186) 
* update conda branch

* fix conda

* update conda

* update

* update windows build script

* copy static library to build dir

* try again

* fix

* lint
 2023-01-19 22:28:04 +08:00
Quan (Andy) Gan c134119096 [Sparse] Update HGNN notebook (#5206) 
* Created using Colaboratory

* Created using Colaboratory
 2023-01-19 22:27:57 +08:00
czkkkkkk db77283130 [Sparse] Only support scalar or vector values in SparseMatrix creators (#5204) 
* [Sparse] Only support scalar or vector values in SparseMatrix creators

* Update

* Update sparse_matrix.py

Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com>
 2023-01-19 21:46:46 +08:00
Minjie Wang c7e3754d38 [Doc] fix colab tutorials (#5205) 
* Created using Colaboratory

* Created using Colaboratory

* Created using Colaboratory

* Created using Colaboratory

* minor tweak

* minor fix

* Created using Colaboratory

* Update notebooks/sparse/quickstart.ipynb
 2023-01-19 20:53:51 +08:00
Hongzhi (Steve), Chen d965acab7f Change size to shape in print. (#5207) 
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-19 17:21:11 +08:00
Hongzhi (Steve), Chen c4ffd75223 [Misc] Polish the doc strings. (#5203) 
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-19 16:37:08 +08:00
Hongzhi (Steve), Chen 050798e9aa Update dgl.sparse rst. (#5201) 
* dgl

* blabla

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-19 12:22:48 +08:00
Rhett Ying 535f4b29e3 [Doc] enable note book exec for pytorch backend 2023-01-19 12:19:05 +08:00
Mufei Li dffe722f5d Update (#5196) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>
 2023-01-19 10:16:46 +08:00
Rhett Ying 995c1913aa Update conf.py 2023-01-18 23:26:37 +08:00
Rhett Ying 11d7994708 [Doc] disable nbsphinx exec 2023-01-18 22:52:16 +08:00
Rhett Ying aba0506c81 Update conf.py 2023-01-18 22:29:55 +08:00
Rhett Ying 395b89e4b1 [Doc] add nbsphinx for pytorch only 2023-01-18 21:40:49 +08:00
Rhett Ying 9120b5a71c [Doc] specify backend as pytorch for tutorials (#5198) 2023-01-18 18:40:57 +08:00