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peizhou/negative__patch
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149 次代码提交

作者 SHA1 备注 提交日期
Kunal Mukherjee 484fabdcc1 [Model] Implemented PGExplainer for Homogeneous graph (#5550) 
Co-authored-by: kxm180046 <kxm180046@utdallas.edu>
Co-authored-by: Infinity_X <Infinity_X@sinomo.net>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2023-05-10 20:31:48 +08:00
paoxiaode c4c9b830ae [NN] GatedGCNConv (#5654) 2023-05-06 18:20:06 +08:00
Chang Liu e6eefd1a13 [Bugfix] Fix the uninitialized pin_memory flag for empty graph (#5609) 2023-04-26 17:56:01 -07:00
Chang Liu 00c3edc1cf [Bugfix] Fix unit test failures on older GPUs (#5579) 2023-04-21 18:33:51 -07:00
Kunal Mukherjee c0f346e754 [Model] Implemented SubgraphX Explainer for Heterogeneous graph (#5530) 
Co-authored-by: kxm180046 <kxm180046@utdallas.edu>
Co-authored-by: Nick Baker <ndbaker1@outlook.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2023-04-21 14:05:02 +08:00
czkkkkkk f41934df87 [Sparse] Add conversion between DGLGraph and SparseMatrix. (#5553) 2023-04-20 18:00:34 +08:00
Zhiteng Li b58416f76a [NN] Refine the API of GraphormerLayer (#5565) 
Co-authored-by: rudongyu <ru_dongyu@outlook.com>
 2023-04-19 16:36:25 +08:00
Kunal Mukherjee 95aaa4934a [Fix] np.float and np.int deprecated usage (#5563) 
Co-authored-by: kxm180046 <kxm180046@utdallas.edu>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2023-04-17 18:48:03 +08:00
Kunal Mukherjee 23ef2ddd71 [Fix] np.asscalar deprecated usage (#5557) 
Co-authored-by: kxm180046 <kxm180046@utdallas.edu>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2023-04-17 13:52:25 +08:00
czkkkkkk b57c56d9a1 [Sparse] Support broadcasting operators (#5544) 2023-04-15 10:36:12 +08:00
czkkkkkk 7c465d20fc [Sparse] Support spspdiv (#5541) 
Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com>
 2023-04-14 16:46:51 +08:00
rudongyu bb1f8850e5 [NN] Refactor the Code Structure of GT (#5100) 2023-04-14 11:50:14 +08:00
Venzino.Han f1b0a07984 [NN] add egatconv edge_weight (#5539) 
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2023-04-13 20:54:42 +08:00
czkkkkkk 893098888e [Sparse] Support spspmul (#5543) 2023-04-13 09:07:49 +08:00
peizhou001 4864a9f903 [Bug] Merge rather replace when find reverse eids (#5532) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-19.ap-northeast-1.compute.internal>
 2023-04-12 10:42:42 +08:00
Chang Liu 62b5f50a5c [Feature] Import PyTorch's pin_memory() method for DGL graph structure (#5366) 2023-04-10 19:21:32 -07:00
Tianqi Zhang (张天启) 27b008b9b1 [BugFix] Fix unstable behavior of beuteforce-sharemem KNN (#5515) 2023-04-10 22:26:10 +08:00
schmidt-ju 97286f98d3 [NN] Add EdgeGAT operator (#5282) 
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2023-04-09 22:54:49 +08:00
Ilia Taraban acb4eb7ecd [Feature] Add bfloat16 support for CPU (#5497) 
Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com>
 2023-04-06 11:16:41 +02:00
Mufei Li a244de579c [Dataset] WisconsinDataset (#5520) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>
 2023-04-04 16:44:26 +08:00
Mufei Li dd4c74ff32 [Dataset] CornellDataset and TexasDataset (#5513) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>
 2023-04-03 16:16:37 +08:00
czkkkkkk 4463b3d6a5 [Sparse] Support strided tensor when calling old DGL APIs (#5506) 2023-03-31 23:18:55 +08:00
Venzino.Han d45eafd47f [NN] add gatconv edge_weight (#5503) 
Co-authored-by: venzino-han <venzino.han@buzzvil.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2023-03-31 19:53:49 +08:00
Mufei Li 2b5921e759 [Dataset] Actor (#5511) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>
 2023-03-31 10:28:50 +08:00
Mufei Li 690f37bbe9 update (#5507) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>
 2023-03-28 19:22:44 +08:00
Hongzhi (Steve), Chen 5b409bf7f5 Rename_test (#5487) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>
 2023-03-24 18:44:24 +08:00
Mufei Li 9e532e7def [Dataset] Chameleon (#5477) 
* update

* update

* update

* lint

* update

* CI

* lint

* update doc

---------

Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>
 2023-03-23 22:34:00 +08:00
ZhenyuLU_Heliodore 4534650f5f [Dataset] Add ZINC Dataset (#5428) 
* Update dgl.data.rst

* Add files via upload

* Add files via upload

* Add files via upload

* Update zinc.py

* Update dgl.data.rst

* Update test_data.py

* Add files via upload

* Update cluster.py

* Update pattern.py

* Update zinc.py

* Update zinc.py

* Update test_data.py

* lint

* fix

* fix path

* update test on label shape

---------

Co-authored-by: rudongyu <ru_dongyu@outlook.com>
 2023-03-22 18:04:41 +08:00
czkkkkkk 866c70dace [Sparse] Fix bugs in Diag format conversions (#5465) 2023-03-21 09:24:53 +08:00
Hongzhi (Steve), Chen 8a83027274 [Misc] Merge test utils. (#5440) 
* merge

* format

* rename

* sort

* sort

* update

* update

* update

* Update tests/utils/checks.py

Co-authored-by: Mufei Li <mufeili1996@gmail.com>

---------

Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2023-03-20 15:32:45 +08:00
Daniil Sizov 87fb7ed05b [Config] Enable libxsmm by default for AVX cpu (#5165) 
* Enable AVX by default

* Fix linting errors

* Fix win64 build (libxsmm not linked)

Libxsmm on Win64 is not linked, should be disabled by default

* Fix clang format issues

* Change lower supported cpu version to LIBXSMM_X86_AVX2

Change lower supported cpu version to LIBXSMM_X86_AVX2 to address https://github.com/dmlc/dgl/issues/3459 issue

* Fix unit test

Remove assumption that libxsmm is enabled in the config by default (only true for intel CPUs with AVX2 instructions)

---------

Co-authored-by: Ubuntu <ubuntu@ip-172-31-15-137.us-west-2.compute.internal>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2023-03-16 02:05:22 +08:00
czkkkkkk 92e383c3b8 [Sparse] Remove the Python DiagMatrix class (#5444) 
* [Sparse] Remove the Python DiagMatrix class

* Update

* Update

* update

* Update
 2023-03-15 18:17:52 +08:00
Gleb Bazhenov 54b4bd0acd [Data] new functional for creating data splits in graph (#5418) 
* new functional for creating data splits in graph

* minor fix in data split implementation

* apply suggestions from code review

Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* refactoring + unit tests

* fix test file name

* move imports to the top

* Revert "fix test file name"

This reverts commit 126323e38c8de6fdc73c826dccc9048aed8f9634.

* remove nccl submodule

* address linter issues

---------

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com>
 2023-03-09 18:55:25 +08:00
Hongzhi (Steve), Chen e250ba3d99 [Misc] Rename test_utils -> pytests_utils. (#5438) 
* rename

* sort

* rename

---------

Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>
 2023-03-09 09:42:29 +08:00
kkranen fe3d29ac4d [Dataloading] Ignore edge types without reverse types in edge dataloader (#5411) 
* Bugfix for reverse edge issue.

* Resolved copy/paste transcription error

* lint

* Added unit tests for graph with not all reverses.

* linting + added backend device test

---------

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com>
 2023-03-08 22:04:51 +08:00
Xin Yao ae4a5b7394 [Feature] Add state_dict, load_state_dict, param_groups to dgl.optim.SparseGradOptimizer (#5311) 
* init update

* all get/set optm_state

* add unit tests

* add docstring

* fix for multiple embeddings

* move embedding methods to private

* fix lint

* fix unit tests

* resolve comments

* merge master
 2023-03-08 16:46:34 +08:00
Guangyu Zhou 178290249e [Dataset] Add PATTERN dataset (#5422) 
* add PATTERN dataset

* fix bug

* fix bugs

* fix issues

* refine according to dongyu's comments

---------

Co-authored-by: BuptTab <gyzhou2000@gmail.com>
Co-authored-by: rudongyu <ru_dongyu@outlook.com>
 2023-03-08 14:08:12 +08:00
Xin Yao 8d5d8962ad [Refactor] Replace third_party/nccl with PyTorch's NCCL backend (#4989) 
* expose GeneratePermutation

* add sparse_all_to_all_push

* add sparse_all_to_all_pull

* add unit test

* handle world_size=1

* remove python nccl wrapper

* remove the nccl dependency

* use pinned memory to speedup D2H copy

* fix lint

* resolve comments

* fix lint

* fix ut

* resolve comments
 2023-03-08 12:59:10 +08:00
Quan (Andy) Gan 851d66fa65 [Bugfix] Fix duplicate worker_init_fn argument when provided in DataLoader (#5420) 
* fix duplicate worker_init_fn

* lint

* lint again

* uugh
 2023-03-06 23:41:53 +08:00
Mufei Li f00cd6efbd [Utils] Edge and LINKX homophily measure (#5382) 
* Update

* lint

* lint

* r prefix

* CI

* lint

* skip TF

* Update

* edge homophily

* linkx homophily

* format

* skip TF

* fix test

* update

* lint

* lint

* review

* lint

* update

* lint

* update

* CI

---------

Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>
 2023-03-03 16:58:20 +08:00
Zhiteng Li a53ecd229b [Dataset] Add CLUSTER dataset (#5389) 
* add CLUSTER dataset

* refine according to dongyu's comments

---------

Co-authored-by: rudongyu <ru_dongyu@outlook.com>
 2023-03-01 16:36:12 +08:00
czkkkkkk 999c624582 [Sparse] Support converson to/from torch sparse tensor. (#5388) 
* [Sparse] Support converson to/from torch sparse tensor.

* Update
 2023-02-28 17:27:23 +08:00
Mufei Li fcf5ad5f49 [Utils] Node homophily measure (#5376) 
* Update

* lint

* lint

* r prefix

* CI

* lint

* skip TF

* Update

---------

Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>
 2023-02-24 14:26:02 +08:00
czkkkkkk 5ffd2a022c [Sparse] Support column-wise softmax (#5377) 
* [Sparse] Support column-wise softmax

* Update python/dgl/sparse/softmax.py

Co-authored-by: Mufei Li <mufeili1996@gmail.com>

---------

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2023-02-24 10:03:43 +08:00
Kunal Mukherjee 45153fc078 [Model] Implemented SubgraphX Explainer for Homogeneous graph (#5315) 
* subgraphx commit

* nits

* newline eof added

* lint fix

* test script updated to use default values

* lint fix

* graphs that are used for test cases are updated to a small graph

* lint formatted

* test paramter adj to complete the test under 20s

* lint fixes

---------

Co-authored-by: kxm180046 <kxm180046@utdallas.edu>
 2023-02-23 12:50:31 +08:00
peizhou001 7ff041528c [Refactor] Add default ffi namespce capi (#5359) 2023-02-22 21:33:30 +08:00
Hongzhi (Steve), Chen 74c9d27d16 [Misc] Auto-format tests. (#5313) 
* [Misc] Auto-format tests.

* more

---------

Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>
 2023-02-17 23:33:44 +08:00
Hongzhi (Steve), Chen 86193c26f7 [Misc] Reorg python test (with backend) according to the guideline. (#5312) 
* rename

* remove test transpose

* udpate

* rename

* cleanup

---------

Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>
 2023-02-17 16:11:39 +08:00
Hongzhi (Steve), Chen d9e550369f [Misc] Reorg python test according to the guideline. (#5307) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>
 2023-02-17 16:08:20 +08:00