484fabdcc1
[Model] Implemented PGExplainer for Homogeneous graph ( #5550 )
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Co-authored-by: kxm180046 <kxm180046@utdallas.edu >
Co-authored-by: Infinity_X <Infinity_X@sinomo.net >
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2023-05-10 20:31:48 +08:00
8e73c75f4a
[Fix] Fix tensor.storage() deprecation warning ( #5656 )
2023-05-09 13:41:53 +08:00
c4c9b830ae
[NN] GatedGCNConv ( #5654 )
2023-05-06 18:20:06 +08:00
d6c12f0714
[NN] Fix #5642 ( #5652 )
2023-05-06 13:03:20 +08:00
ea706cae58
[Model] Update cugraph-ops models for 23.04 release ( #5540 )
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Co-authored-by: schmidt-ju <79865721+schmidt-ju@users.noreply.github.com >
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
Co-authored-by: peizhou001 <110809584+peizhou001@users.noreply.github.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-19.ap-northeast-1.compute.internal >
2023-05-04 17:11:22 +08:00
1ab0170a10
[Distributed] Ensure round-robin edge file downloads, reduce logging, other improvements. ( #5578 )
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Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com >
2023-04-27 11:17:55 -07:00
c0f346e754
[Model] Implemented SubgraphX Explainer for Heterogeneous graph ( #5530 )
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Co-authored-by: kxm180046 <kxm180046@utdallas.edu >
Co-authored-by: Nick Baker <ndbaker1@outlook.com >
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2023-04-21 14:05:02 +08:00
f41934df87
[Sparse] Add conversion between DGLGraph and SparseMatrix. ( #5553 )
2023-04-20 18:00:34 +08:00
e6226e826d
[LOG] check whether cpu_affinity is avaible on the platform ( #5572 )
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Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2023-04-20 15:44:52 +08:00
b58416f76a
[NN] Refine the API of GraphormerLayer ( #5565 )
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Co-authored-by: rudongyu <ru_dongyu@outlook.com >
2023-04-19 16:36:25 +08:00
b57c56d9a1
[Sparse] Support broadcasting operators ( #5544 )
2023-04-15 10:36:12 +08:00
7c465d20fc
[Sparse] Support spspdiv ( #5541 )
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Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com >
2023-04-14 16:46:51 +08:00
bb1f8850e5
[NN] Refactor the Code Structure of GT ( #5100 )
2023-04-14 11:50:14 +08:00
f1b0a07984
[NN] add egatconv edge_weight ( #5539 )
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Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2023-04-13 20:54:42 +08:00
893098888e
[Sparse] Support spspmul ( #5543 )
2023-04-13 09:07:49 +08:00
4864a9f903
[Bug] Merge rather replace when find reverse eids ( #5532 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-19.ap-northeast-1.compute.internal >
2023-04-12 10:42:42 +08:00
62b5f50a5c
[Feature] Import PyTorch's pin_memory() method for DGL graph structure ( #5366 )
2023-04-10 19:21:32 -07:00
97286f98d3
[NN] Add EdgeGAT operator ( #5282 )
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Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2023-04-09 22:54:49 +08:00
acb4eb7ecd
[Feature] Add bfloat16 support for CPU ( #5497 )
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Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com >
2023-04-06 11:16:41 +02:00
29e6661523
[Optimization] Optimize bias term in GatConv layer ( #5466 )
2023-04-05 23:17:10 +08:00
a244de579c
[Dataset] WisconsinDataset ( #5520 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2023-04-04 16:44:26 +08:00
dd4c74ff32
[Dataset] CornellDataset and TexasDataset ( #5513 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2023-04-03 16:16:37 +08:00
d45eafd47f
[NN] add gatconv edge_weight ( #5503 )
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Co-authored-by: venzino-han <venzino.han@buzzvil.com >
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2023-03-31 19:53:49 +08:00
2b5921e759
[Dataset] Actor ( #5511 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2023-03-31 10:28:50 +08:00
8f9f2e2a4d
[Misc] Rename number_of_edges and number_of_nodes to num_edges and num_nodes. ( #5472 )
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* core
* revert
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-03-29 08:57:47 +08:00
690f37bbe9
update ( #5507 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2023-03-28 19:22:44 +08:00
89b321b847
[Misc] Rename number_of_edges and number_of_nodes to num_edges and num_nodes. ( #5488 )
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* nn-only
* data-only
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-03-28 12:58:54 +08:00
7f5da69709
[Misc] Rename number_of_edges and number_of_nodes to num_edges and num_nodes in dist related python files. ( #5489 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-03-27 15:55:37 +08:00
9e532e7def
[Dataset] Chameleon ( #5477 )
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* update
* update
* update
* lint
* update
* CI
* lint
* update doc
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2023-03-23 22:34:00 +08:00
170203ae2b
[Performance] Creating out buffers for segment_mm|sddmm via torch.empty() ( #5462 )
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* update for segmentMM
* update for sddmm
* fix a bug
2023-03-23 17:41:07 +08:00
0ac9bf34b5
Rename number_of_nodes, number_of_edges to num_nodes, num_edges. ( #5486 )
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* Add num_nodes/num_edges
* additional
* Update python/dgl/graph_index.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
* Apply suggestions from code review
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
---------
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2023-03-23 17:30:45 +08:00
4534650f5f
[Dataset] Add ZINC Dataset ( #5428 )
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* Update dgl.data.rst
* Add files via upload
* Add files via upload
* Add files via upload
* Update zinc.py
* Update dgl.data.rst
* Update test_data.py
* Add files via upload
* Update cluster.py
* Update pattern.py
* Update zinc.py
* Update zinc.py
* Update test_data.py
* lint
* fix
* fix path
* update test on label shape
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Co-authored-by: rudongyu <ru_dongyu@outlook.com >
2023-03-22 18:04:41 +08:00
92e383c3b8
[Sparse] Remove the Python DiagMatrix class ( #5444 )
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* [Sparse] Remove the Python DiagMatrix class
* Update
* Update
* update
* Update
2023-03-15 18:17:52 +08:00
f5ddb11448
Update neighbor_sampler.py ( #5450 )
2023-03-14 15:46:40 +08:00
d2ed57e94b
[DistDGL] add log when load graph and data ( #5350 )
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* [DistDGL] add log when load graph and data
* fix lint
* refine log
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Co-authored-by: Israt Nisa <neesha295@gmail.com >
2023-03-10 14:21:32 +08:00
54b4bd0acd
[Data] new functional for creating data splits in graph ( #5418 )
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* new functional for creating data splits in graph
* minor fix in data split implementation
* apply suggestions from code review
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
* refactoring + unit tests
* fix test file name
* move imports to the top
* Revert "fix test file name"
This reverts commit 126323e38c8de6fdc73c826dccc9048aed8f9634.
* remove nccl submodule
* address linter issues
---------
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com >
2023-03-09 18:55:25 +08:00
fe3d29ac4d
[Dataloading] Ignore edge types without reverse types in edge dataloader ( #5411 )
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* Bugfix for reverse edge issue.
* Resolved copy/paste transcription error
* lint
* Added unit tests for graph with not all reverses.
* linting + added backend device test
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Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com >
2023-03-08 22:04:51 +08:00
ae4a5b7394
[Feature] Add state_dict, load_state_dict, param_groups to dgl.optim.SparseGradOptimizer ( #5311 )
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* init update
* all get/set optm_state
* add unit tests
* add docstring
* fix for multiple embeddings
* move embedding methods to private
* fix lint
* fix unit tests
* resolve comments
* merge master
2023-03-08 16:46:34 +08:00
178290249e
[Dataset] Add PATTERN dataset ( #5422 )
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* add PATTERN dataset
* fix bug
* fix bugs
* fix issues
* refine according to dongyu's comments
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Co-authored-by: BuptTab <gyzhou2000@gmail.com >
Co-authored-by: rudongyu <ru_dongyu@outlook.com >
2023-03-08 14:08:12 +08:00
a454734f16
[Misc] Follow up on the missing comment in PR#4989. ( #5437 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
Co-authored-by: Xin Yao <yaox12@outlook.com >
2023-03-08 13:32:21 +08:00
8d5d8962ad
[Refactor] Replace third_party/nccl with PyTorch's NCCL backend ( #4989 )
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* expose GeneratePermutation
* add sparse_all_to_all_push
* add sparse_all_to_all_pull
* add unit test
* handle world_size=1
* remove python nccl wrapper
* remove the nccl dependency
* use pinned memory to speedup D2H copy
* fix lint
* resolve comments
* fix lint
* fix ut
* resolve comments
2023-03-08 12:59:10 +08:00
851d66fa65
[Bugfix] Fix duplicate worker_init_fn argument when provided in DataLoader ( #5420 )
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* fix duplicate worker_init_fn
* lint
* lint again
* uugh
2023-03-06 23:41:53 +08:00
bfd411d0d5
[Model] Add dgl.nn.CuGraphGATConv model ( #5168 )
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* add CuGraphGATConv model
* lintrunner
* update model to reflect changes in make_mfg_csr(), move max_in_degree to forward()
* simplify pytest markers
* fall back to FG option for large fanout
* update error msg
* add feat_drop and activation options
* add residual option
* Update python/dgl/nn/pytorch/conv/cugraph_gatconv.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
* Update python/dgl/nn/pytorch/conv/cugraph_gatconv.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
* reset res_fc
---------
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2023-03-04 14:10:06 +08:00
f00cd6efbd
[Utils] Edge and LINKX homophily measure ( #5382 )
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* Update
* lint
* lint
* r prefix
* CI
* lint
* skip TF
* Update
* edge homophily
* linkx homophily
* format
* skip TF
* fix test
* update
* lint
* lint
* review
* lint
* update
* lint
* update
* CI
---------
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2023-03-03 16:58:20 +08:00
a53ecd229b
[Dataset] Add CLUSTER dataset ( #5389 )
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* add CLUSTER dataset
* refine according to dongyu's comments
---------
Co-authored-by: rudongyu <ru_dongyu@outlook.com >
2023-03-01 16:36:12 +08:00
999c624582
[Sparse] Support converson to/from torch sparse tensor. ( #5388 )
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* [Sparse] Support converson to/from torch sparse tensor.
* Update
2023-02-28 17:27:23 +08:00
fcf5ad5f49
[Utils] Node homophily measure ( #5376 )
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* Update
* lint
* lint
* r prefix
* CI
* lint
* skip TF
* Update
---------
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2023-02-24 14:26:02 +08:00
5ffd2a022c
[Sparse] Support column-wise softmax ( #5377 )
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* [Sparse] Support column-wise softmax
* Update python/dgl/sparse/softmax.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
---------
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2023-02-24 10:03:43 +08:00
45153fc078
[Model] Implemented SubgraphX Explainer for Homogeneous graph ( #5315 )
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* subgraphx commit
* nits
* newline eof added
* lint fix
* test script updated to use default values
* lint fix
* graphs that are used for test cases are updated to a small graph
* lint formatted
* test paramter adj to complete the test under 20s
* lint fixes
---------
Co-authored-by: kxm180046 <kxm180046@utdallas.edu >
2023-02-23 12:50:31 +08:00
7ff041528c
[Refactor] Add default ffi namespce capi ( #5359 )
2023-02-22 21:33:30 +08:00
Kunal Mukherjee