8b266f5001
[doc] use tqdm from tqdm.auto ( #7191 )
2024-03-04 16:43:15 +08:00
02f8b6ceff
[dev] add progress bar for download() ( #6800 )
2023-12-21 15:01:13 +08:00
6a9142c278
[Bug] fix extrace_archive default parameter ( #6333 )
2023-09-21 10:03:12 +08:00
2489f5790a
[Doc] fix the paper link in dgl.data.utils.add_node_property_split ( #5909 )
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Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com >
2023-06-28 09:27:04 +08:00
54b4bd0acd
[Data] new functional for creating data splits in graph ( #5418 )
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* new functional for creating data splits in graph
* minor fix in data split implementation
* apply suggestions from code review
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
* refactoring + unit tests
* fix test file name
* move imports to the top
* Revert "fix test file name"
This reverts commit 126323e38c8de6fdc73c826dccc9048aed8f9634.
* remove nccl submodule
* address linter issues
---------
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com >
2023-03-09 18:55:25 +08:00
491c19fe4a
[Bugfix] Fix the call of tar.extractall() method ( #5139 )
2023-01-10 23:11:56 -08:00
5c6af80444
CVE-2007-4559 Patch ( #5122 )
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* Adding tarfile member sanitization to extractall()
* Update utils.py
Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com >
2023-01-09 11:49:10 +08:00
a208e8868b
[Misc] Black auto fix. ( #4680 )
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* [Misc] Black auto fix.
* fix pylint disable
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2022-10-08 14:15:56 +08:00
fdbf5a0fda
[DGL-Go][Doc] Update DGL-Go version to 0.0.2 and misc fix from bug bash ( #4236 )
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* Update
* Update
* Update
* Update
Co-authored-by: Ubuntu <ubuntu@ip-172-31-53-142.us-west-2.compute.internal >
Co-authored-by: Xin Yao <xiny@nvidia.com >
2022-07-14 21:30:38 +08:00
92e7733065
[dataset] Add a reorder flag to builtin datasets ( #4104 )
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* add argument reorder=False for citation_graph
* add description of the argument reorder
* add reordered/un_reordered save_path
* add version number postfix
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-06-12 12:35:30 +08:00
5152a87982
[Data] Utility function and class for converting a dataset for node prediction ( #3695 )
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* add ut
* add doc link
* install dep
* fix ci
* fix ut; more comments
* remove deprecated attributes in rdf datasets; fix label feature name
* address comments
* fix ut for other frameworks
2022-01-30 14:31:37 +08:00
f9fd7fd7f7
[BugFix] extract gz into target dir ( #3389 )
2021-09-30 11:35:40 +08:00
c9c6171b9f
Revert "[Feature] Basic utils to handle raw data features ( #2102 )" ( #2147 )
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This reverts commit 33a8bb93bfwmjlyjemaine@gmail.com >
2020-09-08 10:33:59 +08:00
33a8bb93bf
[Feature] Basic utils to handle raw data features ( #2102 )
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* add feature utils and add test for feature norm
* Add docstring and test
* upd
* dis able some test
* Update
* update doc string
* update
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal >
2020-08-27 11:36:39 +08:00
dbb028acc8
[Dataset] Builtin knowledge graph dataset ( #1881 )
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* buildin knowledge graph dataset
* upd
* docstring
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
Co-authored-by: Tong He <hetong007@gmail.com >
2020-07-30 23:37:33 +08:00
aee1067941
[Dataset] RDF dataset with DGL-Dataset template ( #1869 )
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* update rdf builtin dataset
* Fix
* use new dataset
* fix
* rdf dataset using new framework
* tf work
* Fix mxnet
* Fix tensorflow
* Fix mxnet
* Update
* upd
* update some docstring
* clean some dead code
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
2020-07-30 09:12:00 +08:00
64557819d9
Basic class for dgl datasetyy ( #1809 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
2020-07-20 13:12:36 +08:00
2b9d06b6e2
[Data] Retry downloading once if dataset initialization fails ( #1520 )
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* dataloader guard
* more fixes
* sets overwrite to true by default
* Update utils.py
* fix
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2020-06-03 17:21:05 +08:00
1506560e1e
[Data] Add utils to save dict of tensors ( #1481 )
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* add functions
* fix litn
* add unit test
* fix
* fix
2020-04-27 12:26:41 -07:00
1c4bfb62bb
[Performance] Replace np.array with np.asarray ( #1301 )
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* replace np.array with np.asarray
* fix
Co-authored-by: Minjie Wang <minjie.wang@nyu.edu >
2020-03-03 20:45:41 +08:00
537d37c26c
[Misc] add requests as the package dependency ( #1268 )
2020-02-17 23:45:17 +08:00
319118341d
[Dataset] Change download repo link to https://data.dgl.ai (CDN) ( #1175 )
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* change download link to cdn
* Update env_var.rst
2020-01-07 17:16:45 +08:00
9c790b1143
[Dataset] Add CoraFull, Amazon, KarateClub, Coauthor Dataset ( #855 )
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* convert np.ndarray to backend tensor
* add datasets
* add qm7
* add dataset
* add dataset
* fix
* change ppi
* tu dataset
* add datasets
* fix
* fix
* fix
* fix
* add docstring
* docs
* doc
2019-10-01 01:19:59 +08:00
0fb13f7b9d
[Feature] Data format ( #728 )
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* Add serialization
* add serialization
* add serialization
* lalalalalalalala
* lalalalalalalala
* serialize
* serialize
* nnn
* WIP: import tvm runtime node system
* WIP: object system
* containers
* tested basic container composition
* tested custom object
* tmp
* fix setattr bug
* tested object container return
* fix lint
* some comments about get/set state
* fix lint
* fix lint
* update cython
* fix cython
* ffi doc
* fix doc
* WIP: using object system for graph
* c++ side refactoring done; compiled
* remove stale apis
* fix bug in DGLGraphCreate; passed test_graph.py
* fix bug in python modify; passed utest for pytorch/cpu
* fix lint
* Add serialization
* Add serialization
* fix
* fix typo
* serialize with new ffi
* commit
* commit
* commit
* save
* save
* save
* save
* commit
* clean
* Delete tt2.py
* fix lint
* Add serialization
* fix lint 2
* fix lint
* fix lint
* fix lint
* fix lint
* Fix Lint
* Add serialization
* Change to Macro
* fix
* fix
* fix bugs
* refactor
* refactor
* updating dmlc-core to include force flag
* trying tempfile
* delete leaked pointer
* Fix assert
* fix assert
* add comment and test case
* add graph labels
* add load labels
* lint
* lint
* add graph labels
* lint
* fix windows
* fix
* update dmlc-core to latest
* fix
* fix camel naming
2019-09-09 20:57:51 +08:00
189c2c0907
[Model Zoo] Refactor Model Zoo for Chemistry ( #839 )
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* Update
* Update
* Update
* Update fix
* Update
* Update
* Refactor
* Update
* Update
* Update
* Update
* Update
* Update
* Fix style
2019-09-07 20:01:09 +08:00
73b2668fe2
[Model Zoo] DGMG for molecule generation ( #783 )
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* DGMG for molecule generation
* Fix CI check
* Fix for CI
* Trial for CI due to shared memory
* Update
* Better interface for dataset configuration
* Update
* Handle corner cases
* Update README
* Fix
* Fix
* Fix
* Fix
* Fix
* Refactor
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Fix
* Fix
* Fix
* Fix
* Fix
* Finallly
2019-08-26 03:39:20 +08:00
2ee3c78c7c
[Dataset] Tox21 ( #760 )
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* tox21
* fix ci
* fix ci
* fix urls to url
* add doc
* remove binary
2019-08-14 16:55:01 +08:00
37feb479fd
[Release] 0.1.2 updates ( #276 )
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* 0.1.2 release
* oops
* more fixes on windows
* [Bugfix] fix download dir (#275 )
* fix download dir
* add doc for the env var
2018-12-07 01:54:13 -05:00
21255b6528
[Bugfix] tolist and dependencies in dgl.data ( #239 )
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* change Index.tolist -> Index.tonumpy; fix bug in traversal; remove dependencies in data
* fix import
* fix __all__ and some docstring
2018-12-05 12:20:59 -05:00
5278220f85
update s3 links ( #215 )
2018-12-02 20:48:29 +08:00
3a0f86a663
[Doc] data ( #198 )
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* Fix dataset
* Track data APIs
2018-11-30 11:40:22 -05:00
ec4216dda8
[MODEL] junction tree vae example ( #70 )
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* junction tree vae example
* added README and moved data to dropbox
* auto download; some fix in python3
2018-10-06 16:59:47 -04:00
2c489fadec
SPMV specialization ( #32 )
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* fix edge list order problem in cached graph.
* minor fix
* fix bug in edge iter
* SPMV works
* gcn spmv on CPU
* change gcn style
* fix cached graph performance; fixed gcn dataset bug
* reorg dir
* non-batch spmv; partial update problem with shape change
* fix reorder problem; finish gcn-batch impl
* pop API
* GPU context
2018-08-06 14:00:06 -04:00
Rhett Ying