37be02a486
[Feature] enable socket net_type for rpc ( #3951 )
...
* [Feature] enable socket net_type for rpc
* fix lint
* fix lint
* fix build issue on windows
* fix test failure on windows
* fix test failure
* fix cpp unit test failure
* net_type blocking max_try_times
* fix other comments
* fix lint
* fix comment
* fix lint
* fix cpp
2022-04-28 00:10:06 +08:00
fbbca994b7
[Feature] METIS Partition with Communication Volume Minimization ( #3821 )
...
* upd
* upd
* upd
* upd
* upd
* fix OpenMP compatibility issues
* typo
* partition
* misc
* fix typo
* num_parts=1
* import torch
* long
* print info
* print info
* print info
* upd
* remove debug code
* revert partition.py
* fix cut count
* fix cut count
* Revert "fix cut count"
This reverts commit 10926b4fd48f45c8f1ddb58be7db6c22e653effd.
* Revert "fix cut count"
This reverts commit 76465283bef093a2b4209ad70dd15d2437b2ec8a.
* type of deprecate
* typo in deprecate info
* fix typo
* use cv for partitioning
* CE
* no message
* revert
* typo
* add objtype
* no message
* fix bug
* fix bug
* fix bug
* ?
* semicolon
* drop tensors
* no message
* backward
* backward
* max op
* store X.shape
* th
* test
* Revert "test"
This reverts commit 92b3b2f64a3a1128590098fa03ce429c5466e6ce.
* test
* tolist
* debug
* to cuda
* tuple
* fix bug
* remove X
* no message
* fix bug
* workload balance
* Revert "workload balance"
This reverts commit d7f8e4a16ba2a7eabb4a9bb945523bfe6623e723.
* reverse
* Revert "reverse"
This reverts commit 8a71cf25685aa7d889b9b8881b46f7a16b7d6e6d.
* Revert "Revert "reverse""
This reverts commit 196b143932d5cf9813576ece7c990b63d322d063.
* Revert "Revert "Revert "reverse"""
This reverts commit cf9e89a07013582056e7cde235e51331aca7fa9c.
* no message
* Merge commit '5498cf051e9cf450dcb798ca09920bbde008a661'
# Conflicts:
# python/dgl/distributed/partition.py
* Revert "Merge commit '5498cf051e9cf450dcb798ca09920bbde008a661'"
This reverts commit f79be2ad777897c7025b28308454cad81ad6bb27.
* fix bug
* third party
* no message
* try to avoid memory leak
* try to avoid memory leak
* avoid memory leak with no hope
* Revert "avoid memory leak with no hope"
This reverts commit c77befe9479f46758e744642f66dd209b50eef7d.
* no message
* Revert "no message"
This reverts commit 478cb28fe25fb1002b2f1dc202bb9bdaad8b2a56.
* del
* Revert "del"
This reverts commit 1b468e45ce646b400ff3ffa61a0b2da058b3bdfd.
* no message
* no message
* Revert "no message"
This reverts commit 92e4f5561ed42da0606618b2fff9f1ad5ed439d9.
* third party
* document
* Update metis_partition.cc
* Update metis_partition_hetero.cc
* Update metis_partition_hetero.cc
* Update partition.py
* Update partition.py
* Update partition.py
Co-authored-by: yzh119 <expye@outlook.com >
Co-authored-by: chwan-rice <54331508+chwan-rice@users.noreply.github.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Da Zheng <zhengda1936@gmail.com >
2022-03-27 14:22:01 -07:00
480a4ae35c
[BugFix] pass ntype/etype into partition book when node/edge_split ( #3828 )
...
* [BugFix] pass ntype/etype into partition book when node/edge_split
* fix test failure
* fix test failue on mxnet
* fix test failure
2022-03-14 15:11:01 -07:00
bb6cec23b4
[BugFix] fix incorrect name when fetch data in sparse optim ( #3808 )
2022-03-06 10:43:43 -08:00
1d80d91a32
[BugFix] call g.is_homogenous instead of len(g.etypes) ( #3793 )
2022-03-02 14:27:52 +08:00
e0f0fa2a78
Fix a bug in sparse optimizer. ( #3779 )
...
* fix a bug.
* Update pylintrc
* fix.
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2022-02-28 12:04:32 -08:00
6d9433b04f
[Transform] [Doc] Rename transform to transforms and update doc ( #3765 )
...
* Update
* Update
* Update
* Fix
* Update
* Update
* Update
* Fix
2022-02-24 21:28:15 +08:00
fcd8ed9acc
[Feature] Launch Long Live Servers and Multiple Client Groups ( #3688 )
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* enable to launch multiple client groups sequentially
* launch simultaneously is enabled
* refine docstring
* revert unnecessary change
* [DOC] add doc for long live server
* refine
* refine doc
* refine doc
2022-02-09 15:56:38 +08:00
738e8318fd
[Feature] CUDA UVA sampling for MultiLayerNeighborSampler ( #3674 )
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* implement pin_memory/unpin_memory/is_pinned for dgl.graph
* update python docstring
* update c++ docstring
* add test
* fix the broken UnifiedTensor
* XPU_SWITCH for kDLCPUPinned
* a rough version ready for testing
* eliminate extra context parameter for pin/unpin
* update train_sampling
* fix linting
* fix typo
* multi-gpu uva sampling case
* disable new format materialization for pinned graphs
* update python doc for pin_memory_
* fix unit test
* UVA sampling for link prediction
* dispatch most csr ops
* update graphsage example to combine uva sampling and UnifiedTensor
* update graphsage example to combine uva sampling and UnifiedTensor
* update graphsage example to combine uva sampling and UnifiedTensor
* update doc
* update examples
* change unitgraph and heterograph's PinMemory to in-place
* update examples for multi-gpu uva sampling
* update doc
* fix linting
* fix cpu build
* fix is_pinned for DistGraph
* fix is_pinned for DistGraph
* update graphsage unsupervised example
* update doc for gpu sampling
* update some check for sampling device switching
* fix linting
* adapt for new dataloader
* fix linting
* fix
* fix some name issue
* adjust device check
* add unit test for uva sampling & fix some zero_copy bug
* fix linting
* update num_threads in graphsage examples
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2022-02-09 14:06:17 +08:00
701b4fccc2
[Sampling] New sampling pipeline plus asynchronous prefetching ( #3665 )
...
* initial update
* more
* more
* multi-gpu example
* cluster gcn, finalize homogeneous
* more explanation
* fix
* bunch of fixes
* fix
* RGAT example and more fixes
* shadow-gnn sampler and some changes in unit test
* fix
* wth
* more fixes
* remove shadow+node/edge dataloader tests for possible ux changes
* lints
* add legacy dataloading import just in case
* fix
* update pylint for f-strings
* fix
* lint
* lint
* lint again
* cherry-picking commit fa9f494
* oops
* fix
* add sample_neighbors in dist_graph
* fix
* lint
* fix
* fix
* fix
* fix tutorial
* fix
* fix
* fix
* fix warning
* remove debug
* add get_foo_storage apis
* lint
2022-01-30 16:13:00 +08:00
92db4bd5a0
fix ( #3700 )
2022-01-28 20:51:15 +08:00
da877df238
[CI] Migrate to pylint 2.6.0 ( #3698 )
...
* migrate to pylint 2.6.0
* fix
* fix?
* ???
* oops
2022-01-28 18:32:18 +08:00
6255c95aae
[Fix] too many open files ( #3694 )
...
* [Fix] too many open files
2022-01-28 13:24:20 +08:00
02e4cd8b56
[Feature] long live server for multiple client groups ( #3645 )
...
* [Feature] long live server for multiple client groups
* generate globally unique name for DistTensor within DGL automatically
2022-01-26 15:21:14 +08:00
e4cb4a3779
[Fix] reduce error msg, refine fetch logic of available ports ( #3658 )
...
* [Fix] reduce error msg, refine fetch logic of available ports
* un-initialize client before sending shutdown request
* fix import error
* print connect failure log only in debug mode
* enable DMLC_LOG_DEBUG=1 in CI
2022-01-19 09:41:58 +08:00
2dd114ed24
[Distributed] Measure peak memory size in graph partitioning ( #3633 )
...
* measure peak memory size.
* fix lint.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-30-164.us-west-2.compute.internal >
2022-01-13 15:41:53 -08:00
37467e2589
[Feature][Dist] change TP::Receiver/TP::Sender for multiple connections ( #3574 )
...
* [Feature] enable TP::Receiver wait for any numbers of senders
* fix random unit test failure
* avoid endless future wait
* fix unit test failure
* fix seg fault when finalize wait in receiver
* [Feature] refactor sender connect logic and remove unnecessary sleeps in unit tests
* fix lint
* release RPCContext resources before process exits
* [Debug] TPReceiver wait start log
* [Debug] add log in get port
* [Debug] add log
* [ReDebug] revert time sleep in unit tests
* [Debug] remove sleep for test_distri,test_mp
* [debug] add more log
* [debug] add listen_booted_ flag
* [debug] restore commented code for queue
* [debug] sleep more in rpc_client
* restore change in tests
* Revert "restore change in tests"
This reverts commit 41a18926d181ec2517069389bfc41de2cc949280.
* Revert "[debug] sleep more in rpc_client"
This reverts commit a908e758eabca0a6ce62eb2e59baea02a840ac67.
* Revert "[debug] restore commented code for queue"
This reverts commit d3f993b3746e6bb6e2cc2f90204dd7e9461c6301.
* Revert "[debug] add listen_booted_ flag"
This reverts commit 244b2167d94942ff2a0acec8823b974975e52580.
* Revert "[debug] add more log"
This reverts commit 4b78447b0a575a824821dc7e25cca2246e6e30e2.
* Revert "[Debug] remove sleep for test_distri,test_mp"
This reverts commit e1df1aadcc8b1c2a0013ed77322ac391a8807612.
* remove debug code
* revert unnecessary change
* revert unnecessary changes
* always reset RPCContext when get started and reset all data
* remove time.sleep in dist tests
* fix lint
* reset envs before each dist test
* reset env properly
* add time sleep when start each server
* sleep for a while when boot server
* replace wait_thread with callback
* fix lint
* add dglconnect handshake check
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2022-01-11 08:55:36 +08:00
a3ce780d29
[RPC] Use tensorpipe for rpc communication ( #3335 )
...
* doesn't know whether works
* add change
* fix
* fix
* fix
* remove
* revert
* lint
* lint
* fix
* revert
* lint
* fix
* only build rpc on linux
* lint
* lint
* fix build on windows
* fix windows
* remove old test
* fix cmake
* Revert "remove old test"
This reverts commit f1ea75c777c34cdc1f08c0589676ba6aee1feb29.
* fix windows
* fix
* fix
* fix indent
* fix indent
* address comment
* fix
* fix
* fix
* fix
* fix
* lint
* fix indent
* fix lint
* add introduction
* fix
* lint
* lint
* add more logs
* fix
* update xbyak for C++14 with gcc5
* Remove channels
* fix
* add test script
* fix
* remove unused file
* fix lint
* add timeout
2021-12-06 20:03:33 +08:00
eb08ef3831
[Distributed] Edge-type-specific fanouts for heterogeneous graphs ( #3558 )
...
* first commit
* second commit
* spaghetti unit tests
* rewrite test
2021-12-06 13:59:29 +08:00
156c17f3a6
[BugFix] Fix a bug of distributed SparseAdam optimizer. ( #3561 )
...
* Fix dist user embed bug
* Add some comments
* trigger
Co-authored-by: xiangsx <xiangsx@ip-10-3-83-86.eu-west-1.compute.internal >
2021-12-03 21:29:25 -08:00
7c7b60be18
[BugFix] add count_nonzero() into SA_Client ( #3417 )
2021-10-12 06:17:30 -07:00
5cf48fc69c
[Feature] Implement one thread multiple socket ( #3200 )
...
Co-authored-by: JingchengYu94 <jingchengyu94@gmail.com >
2021-09-27 21:45:52 -07:00
f4fe518ff7
[Feature] Add a HINT for the per edge type sampler of heterogeneous DistGraph that highlighting the etypes are sorted already. ( #3260 )
...
* pass cpp test
* distgraph use sorted edge flag.
* lint
* triger
* update test
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-66.ec2.internal >
2021-09-01 15:36:01 +08:00
e5ed7adc12
[Distributed] Fix a bug in sampling an empty frontier ( #3298 )
...
* handle empty frontiers.
* fix lint.
* fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-202.us-west-1.compute.internal >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2021-08-29 10:54:46 -07:00
7f9279397a
[Feature][DistDGL] Add NCCL support for range based partitions ( #3213 )
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* Implement range based NDArrayPartition
* Finish implement range based partition support
* Add unit test
* Fix whitepace
* Add Kernel suffix
* Fix argument passing
* Add doxygen docs and improve variable naming
* Add unit test
* Add function for converting a partition book
* Add example to partition_op docs
* Fix dtype conversion for mxnet and tensorflow
2021-08-19 21:17:55 -07:00
6f36dd6366
Cleanup some code in graph_services.py ( #3238 )
...
* Fix bug
* Fix
* Fix
* upd
* Merge some code
* lint
2021-08-15 11:58:37 -07:00
cd2cf606db
[Bugfix] Fix bug introduced by https://github.com/dmlc/dgl/pull/3131 ( #3234 )
...
* Fix bug
* Fix
* Fix
* upd
* trigger
2021-08-10 11:36:57 +08:00
bcf92f6c21
[Bugfix] Distributed training can not work with dgl.dataloading.negative_sampler ( #3215 )
...
* Fix dist negative data loader bug
* upd
* Fix
Co-authored-by: Da Zheng <zhengda1936@gmail.com >
2021-08-06 20:41:20 +08:00
45858d6803
[feature] add count_nonzero function for DistTensor ( #3203 )
...
* add count_nonzero function for DistTensor
* change the load method of local data
Co-authored-by: liuzichang04 <liuzichang04@meituan.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Da Zheng <zhengda1936@gmail.com >
2021-08-05 10:47:50 -07:00
8bc91414e9
[Distributed] Fix distributed training hang with multiple samplers ( #3169 )
...
Rewrite the multiprocessing worker pool
2021-08-01 21:31:04 +08:00
cb4a83a233
[Distributed] Enable distributed EdgeDataLoader ( #3192 )
...
* make heterogeneous find_edges
* add distributed EdgeDataLoader.
* fix.
* fix a bug.
* fix bugs.
* add tests on distributed heterogeneous graph sampling.
* fix.
Co-authored-by: Zheng <dzzhen@3c22fba32af5.ant.amazon.com >
2021-07-28 15:28:27 +08:00
ba7e7cf931
[New Feature] Per edge type sampler for to_homogeneous graphs. ( #3131 )
...
* fix.
* fix.
* fix.
* fix.
* Fix test
* Deprecate old DistEmbedding impl, use synchronized embedding impl
* Basic imple of heterogeneous on homogenenous sampling
* make pass
* Pass C++ test
* Add python test code
* lint
* lint
* Add MultiLayerEtypeNeighborSampler
* Add unitest for single machine dataloader
* Add dist dataloader test for edge type sampler
* Fix lint
* fix
* support for per etype sample
* Fix some bug and enable distributed training with per edge sample
* fix
* Now distributed training works
* turn off some mxnet
* turn off mxnet for some dist test
* fix
* upd
* upd according to the comments
* Fix
* Fix test and now distributed works.
* upd
* upd
* Fix
* Fix bug
* remove dead code.
* upd
* Fix
* upd
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-66.ec2.internal >
Co-authored-by: Da Zheng <zhengda1936@gmail.com >
2021-07-28 11:51:32 +08:00
34426a98e9
[Distributed] Distributed heterograph training ( #3069 )
...
* support hetero RGCN.
* fix.
* simplify code.
* sample_neighbors return heterograph directly.
* avoid using to_heterogeneous.
* compute canonical etypes in advance.
* fix tests.
* fix.
* fix distributed data loader for heterograph.
* use NodeDataLoader.
* fix bugs in partitioning on heterogeneous graphs.
* fix lint.
* fix tests.
* fix.
* fix.
* fix bugs.
* fix tests.
* fix.
* enable coo for distributed.
* fix.
* fix.
* fix.
* fix.
* fix.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal >
Co-authored-by: Zheng <dzzhen@3c22fba32af5.ant.amazon.com >
2021-07-17 10:57:00 +08:00
b379dbd6c8
Optimize dist_graph/_split_even_to_part memory usage ( #3132 )
...
Co-authored-by: yujingcheng02 <yujingcheng02@meituan.com >
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2021-07-15 11:51:56 +08:00
d7390763f0
[Distributed] Deprecate old DistEmbedding impl, use synchronized embedding impl ( #3111 )
...
* fix.
* fix.
* fix.
* fix.
* Fix test
* Deprecate old DistEmbedding impl, use synchronized embedding impl
* update doc
Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-66.ec2.internal >
Co-authored-by: Da Zheng <zhengda1936@gmail.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-07-14 00:15:53 +08:00
4556fab8e6
[Fix] Use logging to print warning message in socket creation ( #3098 )
...
* fix
* fix
* lint
* fix
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2021-07-06 15:33:43 +08:00
485c04cff6
[Distributed] Fix a few bugs in distributed API ( #3094 )
...
* fix.
* fix.
* fix.
* fix.
* Fix test
Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-66.ec2.internal >
2021-07-05 15:12:02 +08:00
0884d02465
[Distributed] Fix bugs in partitioning on heterogeneous graphs. ( #3085 )
...
* fix bugs in partitioning on heterogeneous graphs.
* fix.
* fix.
* fix example.
* fix.
* fix test.
* fix.
* fix.
* fix.
* fix tests.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal >
Co-authored-by: Zheng <dzzhen@3c22fba32af5.ant.amazon.com >
2021-07-02 21:16:14 +08:00
aaec3d8a0b
[Distributed] Support hierarchical partitioning ( #3000 )
...
* add.
* fix.
* fix.
* fix.
* fix.
* add tests.
* support node split and edge split.
* support 1 partition.
* add tests.
* fix.
* fix test.
* use hierarchical partition.
* add check.
Co-authored-by: Zheng <dzzhen@3c22fba32af5.ant.amazon.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-22-57.us-west-2.compute.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal >
2021-06-16 16:58:23 +08:00
7a816f4743
[Doc] Minor fix on the distributed training doc. ( #2968 )
...
Co-authored-by: Zheng <dzzhen@3c22fba32af5.ant.amazon.com >
2021-06-02 18:46:52 +08:00
18dbaebebc
[Distributed] Specify the graph format for distributed training ( #2948 )
...
* explicitly set the graph format.
* fix.
* fix.
* fix launch script.
* fix readme.
Co-authored-by: Zheng <dzzhen@3c22fba32af5.ant.amazon.com >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal >
2021-05-26 18:09:30 +08:00
6e7f19f27b
[Distributed] add distributed in-degree and out-degree. ( #2918 )
...
* add distributed in-degree and out-degree.
* update comments.
* fix a bug.
* add tests.
* add tests.
* fix a bug.
* fix docstring.
* update doc.
* fix
* fix.
Co-authored-by: Zheng <dzzhen@3c22fba32af5.ant.amazon.com >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2021-05-18 19:46:09 +08:00
e156331b0e
return a list of ntypes/etypes ( #2742 )
...
Co-authored-by: Da Zheng <zhengda1936@gmail.com >
2021-05-13 10:42:50 +08:00
975eb8fc5d
[Distributed] Distributed node embedding and sparse optimizer ( #2733 )
...
* Draft for sparse emb
* add some notes
* Fix
* Add sparse optim for dist pytorch
* Update test
* Fix
* upd
* upd
* Fix
* Fix
* Fix bug
* add transductive exmpale
* Fix example
* Some fix
* Upd
* Fix lint
* lint
* lint
* lint
* upd
* Fix lint
* lint
* upd
* remove dead import
* update
* lint
* update unitest
* update example
* Add adam optimizer
* Add unitest and update data
* upd
* upd
* upd
* Fix docstring and fix some bug in example code
* Update rgcn readme
Co-authored-by: Ubuntu <ubuntu@ip-172-31-57-25.ec2.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-24-210.ec2.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-66.ec2.internal >
2021-05-03 08:37:40 +08:00
d76af4d4c1
[Distributed] Return the ID mapping in graph partitioning. ( #2857 )
...
* return mapping.
* support heterogeneous graph.
* more test.
* fix lint.
* fix for diff backends.
* fix.
* fix.
Co-authored-by: Zheng <dzzhen@3c22fba32af5.ant.amazon.com >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2021-04-22 17:51:42 +08:00
de5e8e2392
[Distributed] Fix a bug for graphs without node/edge data. ( #2838 )
...
* fix.
* test distributed graph without node/edge data.
* remove some tests.
* fix lint
2021-04-12 22:35:01 -07:00
0fce09074d
[Distributed] Bind to the correct NIC ( #2798 )
...
Co-authored-by: Da Zheng <zhengda1936@gmail.com >
2021-04-08 17:56:30 -07:00
bfbbefa793
[Distributed] Fix a bug in multiprocessing sampling. ( #2826 )
...
Co-authored-by: Ubuntu <ubuntu@ip-172-31-73-81.ec2.internal >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-04-08 01:29:33 -07:00
e36c5db614
[Distributed] Simplify distributed API ( #2775 )
...
* remove num_workers.
* remove num_workers.
* remove num_workers.
* remove num-servers.
* update error message.
* update docstring.
* fix docs.
* fix tests.
* fix test.
* fix.
* print messages in test.
* fix.
* fix test.
* fix.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal >
2021-03-29 19:19:23 -07:00
97863ab85b
[Distributed] Cleanup the process pool correctly when the process exits. ( #2781 )
...
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2021-03-29 14:53:51 -07:00
Rhett Ying