89b321b847
[Misc] Rename number_of_edges and number_of_nodes to num_edges and num_nodes. ( #5488 )
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* nn-only
* data-only
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-03-28 12:58:54 +08:00
a208e8868b
[Misc] Black auto fix. ( #4680 )
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* [Misc] Black auto fix.
* fix pylint disable
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2022-10-08 14:15:56 +08:00
8b8fd2c0be
[Dataset] Add transform argument to built-in datasets ( #3733 )
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* Update
* Fix
* Update
2022-02-15 16:45:47 +08:00
5152a87982
[Data] Utility function and class for converting a dataset for node prediction ( #3695 )
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* add ut
* add doc link
* install dep
* fix ci
* fix ut; more comments
* remove deprecated attributes in rdf datasets; fix label feature name
* address comments
* fix ut for other frameworks
2022-01-30 14:31:37 +08:00
9ec9df57ca
[Fix] check and load dependencies when needed ( #3655 )
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* [Fix] check and load dependencies when needed
* refine rdflib import
2022-01-18 16:10:47 +08:00
492ad9be81
[Fix] Avoid Overloading Nonzero for PyTorch Backend ( #2434 )
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* Update gatedgraphconv.py
* Update entity_classify.py
* Update data-process.rst
* Update reading_data.py
* Update data-process.rst
* Update utils.py
* Update knowledge_graph.py
* Update entity_classify.py
* Update rdf.py
* Update entity_classify_mb.py
* Update test_classify.py
* Update tensor.py
* Update sparse.py
* Update entity_classify_mp.py
* Update 6_line_graph.py
2020-12-20 13:12:17 +08:00
be444e52d9
[Doc/Feature] Refactor, doc update and behavior fix for graphs ( #1983 )
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* Update graph
* Fix for dgl.graph
* from_scipy
* Replace canonical_etypes with relations
* from_networkx
* Update for hetero_from_relations
* Roll back the change of canonical_etypes to relations
* heterograph
* bipartite
* Update doc
* Fix lint
* Fix lint
* Fix test cases
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Fix test
* Fix
* Update
* Use DGLError
* Update
* Update
* Update
* Update
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Fix
* Fix
* Update
* Update
* Update
* Update
* Update
* Update
* rewrite sanity checks
* delete unnecessary checks
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Fix
* Update
* Update
* Update
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Fix
* Update
* Fix
* Update
* Fix
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
Co-authored-by: Quan Gan <coin2028@hotmail.com >
2020-08-18 04:26:29 +08:00
967ecb8064
[Dataset] Fix the docstring format for dgl.data section ( #1941 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* update data rst
* update data doc and docstring
* API doc rst for dataset
* docstring
* update api doc
* add url format
* update docstring
* update citation graph
* update knowledge graph
* update gc datasets
* fix index
* Rst fix (#3 )
* Fix syntax
* syntax
* update docstring
* update doc (#4 )
* final update
* fix rdflib
* fix rdf
Co-authored-by: HuXiangkun <huxk_hit@qq.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-08-06 14:47:49 +08:00
b347590a37
[Dataset] Citation graph ( #1902 )
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* citation graph
* GCN example use new citatoin dataset
* mxnet gat
* triger
* Fix
* Fix gat
* fix
* Fix tensorflow dgi
* Fix appnp, graphsage for mxnet
* fix monet and sgc for mxnet
* Fix tagcn
* update sgc, appnp
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
2020-08-01 19:25:50 +08:00
dbb028acc8
[Dataset] Builtin knowledge graph dataset ( #1881 )
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* buildin knowledge graph dataset
* upd
* docstring
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
Co-authored-by: Tong He <hetong007@gmail.com >
2020-07-30 23:37:33 +08:00
faa1dc56fc
hot fix ( #1888 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
2020-07-30 12:02:49 +08:00
aee1067941
[Dataset] RDF dataset with DGL-Dataset template ( #1869 )
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* update rdf builtin dataset
* Fix
* use new dataset
* fix
* rdf dataset using new framework
* tf work
* Fix mxnet
* Fix tensorflow
* Fix mxnet
* Update
* upd
* update some docstring
* clean some dead code
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
2020-07-30 09:12:00 +08:00
2b9d06b6e2
[Data] Retry downloading once if dataset initialization fails ( #1520 )
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* dataloader guard
* more fixes
* sets overwrite to true by default
* Update utils.py
* fix
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2020-06-03 17:21:05 +08:00
3efb5d8ecf
[NN] Add HeteroGraphConv module for cleaner module definition ( #1385 )
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* Add HeteroGraphConv
* add custom aggregator; some docstring
* debugging
* rm print
* fix some acc bugs
* fix initialization problem in weight basis
* passed tests
* lint
* fix graphconv flag; add error message
* add mxnet heteroconv
* more fix for mx
* lint
* fix torch cuda test
* fix mx test_nn
* add exhaust test for graphconv
* add tf heteroconv
* fix comment
2020-03-27 18:47:06 +08:00
1c4bfb62bb
[Performance] Replace np.array with np.asarray ( #1301 )
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* replace np.array with np.asarray
* fix
Co-authored-by: Minjie Wang <minjie.wang@nyu.edu >
2020-03-03 20:45:41 +08:00
77ae4d5321
[Example] Fix Rgcn hetero nonedetermistic in graph and model initialization ( #1244 )
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* Fix model save and load problem.
Add offline inference example
* Fix test
* Fix randomness problem between test runs
* Make rdf loader deterministic
2020-02-07 11:07:09 +08:00
1c91f460d3
[Hetero][Model] RGCN for heterogeneous input ( #885 )
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* new hetero RGCN
* bgs running
* fix gpu
* am dataset
* fix bug in label preparation
* Fix AM training; add result
* rm sym link
* new embed layer; mutag
* mutag matched; other fix
* minor fix
* dataset refactor
* new data loading
* rm old files
* refactor
* docstring
* include literal nodes in AIFB dataset
* address comments
* docstring
2019-09-29 00:21:17 -04:00
Hongzhi (Steve), Chen