540dd2ba4d
[TestFailure] Resolving exceptions thrown across multiple GraphBolt tests. ( #7852 )
2025-01-08 14:05:34 +08:00
31115aece2
[UserWarning] Eliminating the use of the deprecated verbose parameter. ( #7812 )
2024-10-10 13:25:54 +08:00
15ace31a16
[Misc] Using the aliases of builtin types like np.int is deprecated ( #7300 )
2024-04-15 11:41:02 +08:00
35e5bca994
Improving the MLP example. ( #6593 )
2023-11-22 07:53:54 +08:00
6a1f94d362
[Examples] Fix bugs of numpy in examples. ( #6546 )
...
Co-authored-by: Ubuntu <ubuntu@ip-172-31-0-133.us-west-2.compute.internal >
2023-11-09 10:09:53 +08:00
8b35cbc80a
Improving the DEEPWALK example. ( #6070 )
...
Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com >
2023-08-07 10:16:04 +08:00
e0aa838971
Improving the CLUSTER_GAT example. ( #6059 )
2023-08-04 11:16:25 +08:00
23772ee160
[Example][Minor] Update README/requirements from sklearn -> scikit-learn ( #5792 )
2023-06-07 10:33:31 +08:00
f41934df87
[Sparse] Add conversion between DGLGraph and SparseMatrix. ( #5553 )
2023-04-20 18:00:34 +08:00
5008af2210
[Misc] Rename number_of_edges and number_of_nodes to num_edges and num_nodes in examples. ( #5492 )
...
* pytorch_example
* fix
---------
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-03-29 11:01:20 +08:00
a07305301e
Update main.py ( #5460 )
2023-03-22 21:01:16 +08:00
704bcaf6dd
examples ( #5323 )
...
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-02-19 08:35:15 +08:00
611393021a
[API Deprecation] Remove candidates in DGLGraph ( #4946 )
2022-12-01 16:41:53 +08:00
3132da2826
Deprecate ( #4864 )
...
rename DGLHeteroGraph to DGLGraph
2022-11-15 10:01:01 +08:00
6566c31fba
Fix ogb/ogbn-mag/heter-RGCN example ( #4839 )
...
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-11-09 14:08:01 +08:00
7c788f531c
[Example] Update SEAL+NGNN for ogbl-citation2 ( #4776 )
...
* Use black for formatting
* limit line width to 80 characters.
* Use a backslash instead of directly concatenating
* file structure adjustment.
* file structure adjustment(2)
* codes for citation2
* format slight adjustment
* adjust format in models.py
* now it runs normally for all datasets.
* add comments; adjust code order.
* adjust indenting.
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-11-03 10:24:03 +08:00
f9805ef11c
[Example] SEAL+NGNN for ogbl-citation2 ( #4772 )
...
* Use black for formatting
* limit line width to 80 characters.
* Use a backslash instead of directly concatenating
* file structure adjustment.
* file structure adjustment(2)
* codes for citation2
* format slight adjustment
* adjust format in models.py
* now it runs normally for all datasets.
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-10-28 00:31:24 +08:00
e682fa74ba
[EXAMPLE]Add device support in hetero_rgcn ( #4677 )
...
* Add device support in hetero_rgcn
Signed-off-by: Xue, Chendi <chendi.xue@intel.com >
* use num_workers instead of hard code and enable cpu_affinity for pytorch > 1.12
Signed-off-by: Xue, Chendi <chendi.xue@intel.com >
* Remove hard code num_workers and use dgl version to check if cpu_affinity is supported
Signed-off-by: Xue, Chendi <chendi.xue@intel.com >
* Remove specified dl_cores and computer_cores
Add error print if num_workers are miss set
Signed-off-by: Xue, Chendi <chendi.xue@intel.com >
* expected num_workers should be less than num_physical_cores
Signed-off-by: Chendi Xue <chendi.xue@intel.com >
* Update examples/pytorch/ogb/ogbn-mag/hetero_rgcn.py
Co-authored-by: Chang Liu <chang.liu@utexas.edu >
* Remove dgl version and num_workers print
Signed-off-by: Xue, Chendi <chendi.xue@intel.com >
* add comment to explain is_support_affinity
* Fix typo
Signed-off-by: Xue, Chendi <chendi.xue@intel.com >
Signed-off-by: Xue, Chendi <chendi.xue@intel.com >
Signed-off-by: Chendi Xue <chendi.xue@intel.com >
Co-authored-by: Chang Liu <chang.liu@utexas.edu >
2022-10-21 17:03:43 -07:00
0b9df9d798
[Misc] Black auto fix. ( #4652 )
...
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2022-09-28 10:28:24 +08:00
7f50a6da2e
[Example][Bugfix] Fix mlp example ( #4631 )
...
* Fix mlp example
* Remove unused file
2022-09-27 15:11:00 +08:00
92bff4d2bb
[Example] SEAL+NGNN for ogbl ( #4550 )
...
* Use black for formatting
* limit line width to 80 characters.
* Use a backslash instead of directly concatenating
* file structure adjustment.
* file structure adjustment(2)
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-09-22 13:09:27 +08:00
b9290e8b2d
[Example] SEAL for OGBL ( #4291 )
...
* [Example] SEAL for OGBL
* update index
* update
* fix readme typo
* add seal sampler
* modify set ops
* prefetch
* efficiency test
* update
* optimize
* fix ScatterAdd dtype issue
* update sampler style
* update
Co-authored-by: Quan Gan <coin2028@hotmail.com >
2022-08-31 11:48:07 +08:00
97b2ab53e2
[Example] directional_GSN for ogbg-molpcba ( #4405 )
...
* version-1
* version-2
* version-3
* update examples/README
* Update .gitignore
* update performance in README, delete scripts
* 1st approving review
* 2nd approving review
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-08-26 15:37:54 +08:00
49c8179548
[Example] NGNN for ogbl ( #4328 )
...
* NGNN for ogbl
* modify doc organization.
* merge similar parts
* 1st approving review.
* minor changes
* Remove the "Usage" section.
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-08-13 19:11:45 +08:00
a88e7f7e28
[Example]rgcn-ogbn-mag ( #4331 )
...
* rgcn-ogbn-mag
* Add link in README.md
* correct code-format,add the reset_parameters function to the HeteroEmbedding module
* add the annotation in hetero.py
* add a unit test
* modify format
* Update
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-50-143.us-west-2.compute.internal >
2022-08-10 20:12:31 +08:00
549df65a77
[Bugfix] Fix example case: examples/pytorch/ogb/ogbn-proteins and examples/pytorch/ogb/ogbn-products ( #4080 )
...
* [Bugfix] Fix ogbn-gat-proteins/products examples
* Remove unused BatchSampler definition
* Remove comments to ease reading/reviewing
* Remove dataloader wrapper
2022-06-09 15:45:28 +08:00
9e46423e4f
[Bugfix] Fix cluster-gat examples ( #4068 )
...
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-06-02 21:39:59 +08:00
74f0140533
[Example] Rename NodeDataLoader to DataLoader in GraphSAGE example ( #3972 )
...
* rename
* Update node_classification.py
* more fixes...
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2022-05-11 09:10:54 +08:00
e06e63d5d5
[Feature] Enable UVA sampling with CPU indices ( #3892 )
...
* enable UVA sampling with CPU indices
* add docs
* add more docs
* lint
* fix
* fix
* better error message
* use mp.Barrier instead of queues
* revert
* revert
* oops
* revert dgl.multiprocessing.spawn
* Update pytorch.py
2022-04-12 20:56:51 +08:00
6d9433b04f
[Transform] [Doc] Rename transform to transforms and update doc ( #3765 )
...
* Update
* Update
* Update
* Fix
* Update
* Update
* Update
* Fix
2022-02-24 21:28:15 +08:00
42897c3652
[Example] An example that re-creates the PyG OGB performance on ogbnmag ( #3563 )
...
* Adding initial files of example
* Removing old timing code
* Improving doc strings and fixing some minor bugs
* Merging from upstream and addressing PR comments
Co-authored-by: zakjost <jostza@amazon.com >
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2021-12-20 22:22:25 +08:00
579cd3eb49
Update README.md ( #3442 )
2021-10-26 14:55:09 +08:00
3f6f694159
[Bug fix] Various fix from bug bash ( #3133 )
...
* Update
* Update
* Update dependencies
* Update
* Update
* Fix ogbn-products gat
* Update
* Update
* Reformat
* Fix typo in node2vec_random_walk
* Specify file encoding
* Working for 6.7
* Update
* Fix subgraph
* Fix doc for sample_neighbors_biased
* Fix hyperlink
* Add example for udf cross reducer
* Fix
* Add example for slice_batch
* Replace dgl.bipartite
* Fix GATConv
* Fix math rendering
* Fix doc
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-17.us-west-2.compute.internal >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-22-156.us-west-2.compute.internal >
2021-07-15 09:17:15 +08:00
3641829211
fix docs ( #3126 )
...
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2021-07-12 11:43:15 +08:00
305d5c16df
[Example] update ogbn-arxiv and ogbn-proteins results ( #3018 )
...
* [Example] GCN on ogbn-arxiv dataset
* Add README.md
* Update GCN implementation on ogbn-arxiv
* Update GCN on ogbn-arxiv
* Fix typo
* Use evaluator to get results
* Fix duplicated
* Fix duplicated
* Update GCN on ogbn-arxiv
* Add GAT for ogbn-arxiv
* Update README.md
* Update GAT on ogbn-arxiv
* Update README.md
* Update README
* Update README.md
* Update README.md
* Add GAT implementation for ogbn-proteins
* Add GAT implementation for ogbn-proteins
* Add GAT implementation for ogbn-proteins
* Add GAT implementation for ogbn-proteins
* Add GAT implementation for ogbn-proteins
* Update examples for ogbn-arxiv
* Update examples for ogbn-arxiv
* Update examples for ogbn-arxiv
* Update examples for ogbn-arxiv
* Update examples for ogbn-arxiv
* Update examples for ogbn-arxiv
* Update examples for ogbn-arxiv
* Update examples for ogbn-arxiv
* Update examples for ogbn-arxiv
* Update examples for ogbn-arxiv
* Update examples for ogbn-arxiv
* Update examples for ogbn-arxiv
* Update examples for ogbn-arxiv
* Update examples for ogbn-arxiv
* Add examples for ogbn-products.
* Update examples for ogbn-proteins.
* Update examples for ogbn-proteins.
* Update examples for ogbn-proteins.
* Update examples for ogbn-proteins.
* Update examples for ogbn-proteins.
* Update examples for ogbn-proteins.
* Update examples for ogbn-proteins.
* Update examples for ogbn-proteins.
* Update examples for ogbn-proteins.
* Update examples for ogbn-products.
* Update examples for ogbn-products.
* Update examples for ogbn-arxiv.
* Update examples for ogbn-arxiv.
* Update examples for ogbn-arxiv.
* Update examples for ogbn-proteins.
* Update examples for ogbn-products.
* Update examples for ogbn-proteins.
* Update examples for ogbn-arxiv.
* Update examples for ogbn-proteins.
* Update README.md
* [Example] ogbn-arxiv & ogbn-proteins
* [Example] ogbn-arxiv & ogbn-proteins
* [Example] ogbn-arxiv & ogbn-proteins
* [Example] ogbn-arxiv & ogbn-proteins
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
Co-authored-by: Zihao Ye <expye@outlook.com >
2021-06-16 12:33:43 +08:00
caa6d6072c
[Feature] Replacing thread_wrapped_func with minimal mp.Process wrapper ( #2905 )
...
* standardizing thread_wrapped_func
* lints
* Update __init__.py
2021-05-14 11:34:49 +08:00
3ca52b1e59
[Fix] Various Fix after Bug Bash ( #2620 )
...
* update
* Misc fix
* Update
2021-02-05 17:34:16 +08:00
6c23fba8fa
[Doc][Org] move edge_softmax to functional ( #2442 )
...
* move edge_softmax to functional
* change examples
* fixes
* revert
* fix
* fix
* remove
* fix
* test
* add init
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-01-26 12:46:37 +08:00
1502c56d51
[Doc] Fix typo of datasets ( #2517 )
...
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-01-13 12:34:47 +08:00
927d2b319b
[Example] Move Data to GPU before Minibatch Training ( #2453 )
...
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
2020-12-28 21:26:32 +08:00
492ad9be81
[Fix] Avoid Overloading Nonzero for PyTorch Backend ( #2434 )
...
* Update gatedgraphconv.py
* Update entity_classify.py
* Update data-process.rst
* Update reading_data.py
* Update data-process.rst
* Update utils.py
* Update knowledge_graph.py
* Update entity_classify.py
* Update rdf.py
* Update entity_classify_mb.py
* Update test_classify.py
* Update tensor.py
* Update sparse.py
* Update entity_classify_mp.py
* Update 6_line_graph.py
2020-12-20 13:12:17 +08:00
b8cc26e34a
[Model] SIGN for OGB dataset ( #2316 )
...
* sign for ogbn products, arxiv, mag
* texts
* fix
* update ogb folder readme
* use dgl nightly build
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2020-11-03 10:28:31 +08:00
269983dbcd
[Fix] typo ( #2265 )
...
* upd
* upd
* upd
* upd
* upd
* fix OpenMP compatibility issues
* typo
* partition
* misc
* fix typo
* num_parts=1
* import torch
* long
* print info
* print info
* print info
* upd
* remove debug code
* revert partition.py
* fix cut count
* fix cut count
* Revert "fix cut count"
This reverts commit 10926b4fd48f45c8f1ddb58be7db6c22e653effd.
* Revert "fix cut count"
This reverts commit 76465283bef093a2b4209ad70dd15d2437b2ec8a.
* type of deprecate
* typo in deprecate info
* fix typo
* use cv for partitioning
* CE
* no message
* revert
* typo
* no message
* no message
* no message
* practice
* dmlc-core
* DGLGraph
Co-authored-by: yzh119 <expye@outlook.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2020-10-29 23:05:36 +08:00
d06c540336
[Example] fix print info ( #2305 )
2020-10-29 09:20:27 +08:00
eef4c05929
[Example] Implement LINE with dgl and pytorch ( #2195 )
...
* line
* two lines
* update readme
* readme
* update readme
* update
* Implement LINE
* readme
* readme
* typos
* update readme
Co-authored-by: Zihao Ye <expye@outlook.com >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2020-09-21 02:30:34 +08:00
47bb05939d
[Example] GAT on ogbn-arxiv ( #2210 )
...
* [Example] GCN on ogbn-arxiv dataset
* Add README.md
* Update GCN implementation on ogbn-arxiv
* Update GCN on ogbn-arxiv
* Fix typo
* Use evaluator to get results
* Fix duplicated
* Fix duplicated
* Update GCN on ogbn-arxiv
* Add GAT for ogbn-arxiv
* Update README.md
* Update GAT on ogbn-arxiv
* Update README.md
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
Co-authored-by: Zihao Ye <expye@outlook.com >
2020-09-18 11:45:13 +08:00
9488bace20
[Fix] fix some typos in example/ogb/deepwalk/ ( #2190 )
...
* line
* two lines
* update readme
* readme
* update readme
* update
Co-authored-by: Zihao Ye <expye@outlook.com >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-09-15 11:01:44 +08:00
0afacfb873
Fix create_format_ to create_formats ( #2184 )
...
* Update dgl.DGLGraph.rst
* Update gcn.py
2020-09-12 14:44:30 +08:00
3659fb05e9
[Example] Fix duplicated ( #2154 )
...
* [Example] GCN on ogbn-arxiv dataset
* Add README.md
* Update GCN implementation on ogbn-arxiv
* Update GCN on ogbn-arxiv
* Fix typo
* Use evaluator to get results
* Fix duplicated
* Fix duplicated
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
Co-authored-by: Zihao Ye <expye@outlook.com >
2020-09-05 23:35:12 +08:00
036084f6b6
[Example] Update GCN on ogbn-arxiv dataset ( #2153 )
...
* [Example] GCN on ogbn-arxiv dataset
* Add README.md
* Update GCN implementation on ogbn-arxiv
* Update GCN on ogbn-arxiv
* Fix typo
* Use evaluator to get results
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
Co-authored-by: Zihao Ye <expye@outlook.com >
2020-09-05 20:07:50 +08:00
Andrei Ivanov