4682b76e60
fixing stupid segfault in edge_ids ( #216 )
2018-12-02 03:12:45 -05:00
168794cdbc
remove text using code line numbers ( #217 )
2018-12-01 21:04:39 -05:00
7156c7163b
[Doc] new at glance doc draft ( #214 )
...
* WIP
* new at glance
2018-12-01 19:03:57 -05:00
53ea03ad82
[Doc] Fix doc bug and warning ( #213 )
...
* fix dgmg tutorial indentation
* bug in incidence_matrix docstring
* remove print
2018-12-01 18:58:56 -05:00
0f121eeb76
[Doc] RGCN tutorial ( #206 )
...
* rgcn tutorial
* data processing for rgcn
* many fix
* requirements for rgcn tutorial
* fix comments
* description of rgcn dataset
* author
* bug fix
* move all dataset to s3
2018-12-01 14:58:13 -05:00
cccc2339c1
[Dataset] update s3 links ( #209 )
2018-12-01 14:45:30 -05:00
e02acc4c01
[Doc] Tutorial production for DGMG ( #204 )
2018-12-01 00:32:43 -05:00
70dc7cd184
[Doc] Dgl glance tutorial improvement ( #197 )
...
* update dgl at a glance
* update title
* Update 1_first.py
2018-11-30 23:53:23 -05:00
bcf8e1194b
[Bugfix][CI] force download data everything ( #208 )
...
* poke ci
* poke again
* force download data everytime
2018-11-30 23:44:40 -05:00
91141a9826
[Dataset] Move file from dropbox to s3 (and fix ci fail due to sst dataset) ( #205 )
...
* move file from dropbox to s3
* fix ci and move sst to s3
* remove blank line
2018-11-30 19:44:55 -05:00
c80dc5e012
[model] Tree-LSTM update & hotfix(dropbox link) ( #202 )
...
* change the signature of node/edge filter
* upd filter
* Support multi-dimension node feature in SPMV
* stable version
* hotfix
* upd tutorial
* upd README
2018-11-30 19:39:49 -05:00
3a0f86a663
[Doc] data ( #198 )
...
* Fix dataset
* Track data APIs
2018-11-30 11:40:22 -05:00
485f6d3abd
[Doc] udf ( #195 )
...
* Docstring for udf
* Track udf docs
* Improve
* Improved
* Delete udf.py
* Improve
2018-11-30 00:38:58 -05:00
9e8261735f
[Doc] Minor doc update for mxnet/immutable_graph_index ( #194 )
2018-11-29 20:59:13 -05:00
41c9c3b94b
[Doc] Fix batched_graph doc ( #193 )
2018-11-29 12:23:10 -05:00
8dc6784b12
[Doc] docstring for BatchedDGLGraph + some fix ( #184 )
...
* Update doc
* Update batched_graph.py
* Fix
* Fix
* Fix
* Fix
2018-11-29 09:53:16 -05:00
e17c41c0da
[Model][Tutorial] Fix capsule memory leak ( #185 )
...
* fix memory leak & Remove unnecessary initializer
* change confused name
* fix name
* Move func outside loop
* fix name inconsistency
2018-11-29 09:40:21 -05:00
79fe09d3e0
forgot to remove conda branch meta ( #190 )
2018-11-29 02:26:39 -05:00
a8fa85c7d5
Conda builds ( #187 )
...
* conda recipe
* switching to source build
* trying windows build
* wip
* windows build works
2018-11-29 02:21:53 -05:00
a0d0b1ea00
[Model] Fix + batched DGMG ( #175 )
...
* DGMG with batch size 1
* Fix
* Adjustment
* Fix
* Fix
* Fix
* Fix
* Fix has_node and __contains__
* Batched implementation for DGMG
* Remove redundant dependency
* Adjustment
* Fix
* Add comments
2018-11-29 00:13:30 +08:00
5cda368d79
[Model] SBM hotfix ( #137 )
...
* [Model]SBM hotfix
* [Model] remove backend in data
2018-11-27 11:58:03 -05:00
02eb463ab1
report accuracy and fix training mask ( #181 )
2018-11-27 15:15:57 +08:00
2c2b747808
[Install] pip install ( #180 )
...
* add bdist_wheel build
* fix wheel build
* fix setup
* fix ci
* fix setup
* fix
* fix setup
* poke ci
* fix
* poke ci
* clean build
* fix ci
* addback the env
2018-11-27 00:47:01 -05:00
b82b8e2d2a
[Schedule] get rid of unnecessary graph.edges() call for v2v-spmv update_all ( #179 )
2018-11-27 00:37:03 -05:00
524e656dd6
[Bugfix] enable SPMV for multi-dimension node feature ( #178 )
...
* Support multi-dimension node feature in SPMV
* fix as requested
2018-11-26 11:12:28 -05:00
b1eeb93449
[Bugfix][Runtime] Zero degree behaviors ( #177 )
...
* fix recv nodes are all 0deg; fix hybriddict does not through keyerror properly
* fallback to apply_nodes when all nodes are 0deg; WIP on pull spmv 0deg
* new 0deg behavior
* new 0deg behavior
* update mx utest for pull-0deg
* fix mx
* fix mx
* get rid of unnecessary sort-n-unique
2018-11-25 22:33:08 -05:00
4dfe7547e8
Fix num_rows bug in batched_graph ( #169 )
2018-11-23 02:49:59 +08:00
23e2e83b5e
[API] change the signature of node/edge filter ( #166 )
...
* change the signature of node/edge filter
* upd filter
2018-11-22 13:00:36 -05:00
deb653f8dc
[Runtime] Scheduler and Executor ( #140 )
...
* executor api
* draft executor interface
* WIP
* revert changes to avoid conflict with api change
* core scheduling logic
* WIP: build graph adj
* incidence matrix for in edges
* support incidence matrix for partial recv nodes
* improve
* build adjmat in scheduler
* graph store
* get degree bucketing schedule
* connect to c++ degree bucketing
* conceptual executor creation code
* executor comments
* fix
* more executor comments
* WIP: full send_and_recv schedule
* most schedulers
* simplify scheduler
* executors
* runtime
* builtin function base class
* adj indices and shape
* completely refactor scheduler
* rename and move bundled out to function.py
* use_edge_feature in msg func
* rewrite scheduler
* node edge executor
* connect with graph api
* handle zero degree
* misc
* fix test cases
* fix a good many bugs...
* remove old scheduler
* push and pull
* fix send recv
* c++ lint
* fix batched send recv
* hot fix for mxnet
* typo
* write back executor
* apply node edge
* clean up, doc string
* fix as requested
* refactor
* fix
* WIP
* WIP
* ir draft
* more on ir
* WIP: spmv schedule
* WIP
* recv schedule
* refactor
* WIP
* snr degree bucketing
* snr scheduler
* move prog to graph.py; rename
* unittest for send/recv
* remove some legacy codes
* WIP: update_all
* pass test_basics
* passed all current utests
* more utests; fix mx utest
* WIP: fixing zero deg initial value
* some tests
* fix 0deg problem
* fix mx
* fix mx
* some notes
* fix as requested
2018-11-22 12:15:50 -05:00
3e8b63ecd3
[Model] DGMG Training with Batch Size 1 ( #161 )
...
* DGMG with batch size 1
* Fix
* Adjustment
* Fix
* Fix
* Fix
* Fix
2018-11-22 10:29:25 -05:00
bf6d0025aa
[Bugfix] fix gpu manual choice for capsule example ( #164 )
2018-11-21 22:01:24 -05:00
0ec1a492b3
[Frame] change num rows behavior ( #163 )
...
* move initializer to column scheme; change num rows behavior
* poke mx ci
* fix mx utest in append
* fix bug in add edges
* utest for updating partial rows
* fix bug in from_networkx and from_scipy_matrix
* revert per-col initializer change
* fix pickle utest
2018-11-21 11:50:46 -05:00
440aecee8f
[Test] add tests for built-in functions ( #159 )
...
* add spmv tests on mxnet.
* test backward.
* add tests for pull.
* use mxnet backend.
* address comment.
* add comments.
2018-11-20 23:39:54 -05:00
5f89cd662e
Fix the convergence problem in SSE. ( #162 )
...
* add a test.
* move file.
* debug
* add degree normalization.
* it can converge now.
* remove hidden_data.
* use readonly graph index.
* use subgraph loader.
* refactor code and remove intermediate data.
* split inference.
* mix cpu and gpu training.
* fix mxnet sparse_matrix constructor.
* convert tensor context.
* set up the prediction model.
* load mxnet csr directly.
* add timing.
* move test_sse.py to sse_batch.py
* fix the tensor version of SSE.
* update README.
2018-11-20 15:57:52 +08:00
e515f5311b
[Frame] supporting partial row on first column and individual column initializers ( #160 )
...
addresses issue #156
2018-11-19 18:18:36 -05:00
cab1fdf2ec
[Doc] doc update ( #158 )
...
* minor fix
* jake's change
2018-11-17 01:53:53 -05:00
79a510252b
Pickling support ( #155 )
...
* pickling support
* resorting to suggested way of pickling
* custom attribute pickling check
* working around a weird pytorch pickling bug
* including partial frame case
* pickling everything now
* fix as requested
2018-11-16 17:19:20 -05:00
05f464f824
[Bugfix] fix args with incontiguous node and edge tensor ( #153 )
2018-11-15 10:55:15 -05:00
ed1854e800
[Bugfix] fix a potential context mismatch ( #154 )
2018-11-15 09:47:20 -05:00
53b9a4bdbc
[DOC][Model] Update Tree-LSTM ( #152 )
...
* update tree lstm
* tree_lstm (new interface)
* simplify pop
* merge qipeng(root)
* upd tree-lstm & tutorial
* upd model
* new capsule tutorial
* capsule for new API
* fix deprecated API
* New tutorial and example
* investigate gc problem
* add viz code
* new capsule tutorial
* remove ipynb
* move u_hat
* add link
* add requirements.txt
* remove ani.save
* update ci to install requirements
* utf-8
* change seed
* graphviz requirement
* accelerate
* little format
* update some markup
2018-11-14 22:29:59 -05:00
2389df8155
[API] Subgraph sampling API. ( #138 )
...
* add neighbor sampler.
* fix sampler.
* handle non-existing nodes differently in MapParentIdToSubgraphId.
* fix sampling tests.
* parallelize sampling.
* add more tests.
* fix a bug in subgraph loader.
* get number of sampled nodes directly.
* load mxnet CSR to DGLGraph directly.
* create graph from mxnet csr array directly.
* use subgraph loader in SSE.
* fix a bug in sampling.
* output framework tensor.
* fix.
* remove unnecessary code.
* fix tests.
* add SSE README.
* move to contrib.
* address comments.
* add tests.
2018-11-14 13:51:27 -08:00
048f6d7a30
[GraphIndex] refactor graph caching ( #150 )
...
* refactor graph caching
* fix mx test
* fix typo
2018-11-13 22:12:38 -05:00
a9ffb59e66
[DOC][Model] Tree-LSTM example and tutorial ( #146 )
...
[DOC][Model] Tree-LSTM example and tutorial
2018-11-13 18:09:14 -05:00
0452cc3c0c
[Bug] Transpose adj is not correctly cached ( #148 )
2018-11-12 22:15:45 -05:00
cd3e25a064
[CI] add graphviz ( #147 )
2018-11-12 15:18:22 -05:00
7cb50072a4
[Doc][Model] New Capsule Tutorial & Example ( #143 )
...
* new capsule tutorial
* capsule for new API
* fix deprecated API
* New tutorial and example
* investigate gc problem
* add viz code
* new capsule tutorial
* remove ipynb
* move u_hat
* add link
* add requirements.txt
* remove ani.save
* update ci to install requirements
* add graphviz
2018-11-12 12:43:13 -05:00
a95459e3a2
[CI] Improved CI ( #141 )
...
* change ci
* update ci
* update ci
* update ci
* update ci
* update ci
* update ci
* update ci
* update ci
* update ci
* update ci
* update ci
* update ci
* update ci
* update ci
* update ci
* nx package
* update ci
* update ci
* update ci
* fix
* mx dockerfile by zhengda
* python3.6->3.5
* update ci image
* add tutorial test
* fix ci
* fix ssl problem
* minor change
* small fix on traversal utest
* fix syntax
* add matplotlib in image
* fix
* update ci
* update ci
2018-11-12 01:06:05 -05:00
7cbb83db9f
better bfs edge test ( #142 )
2018-11-11 23:09:39 -05:00
d6c80e0cf7
[API] bfs with edges ( #132 )
...
* bfs with edges
* dfs toy test case
* clean up
* style fix
* bugfix
* updating docs for bfs_edges and readouts
2018-11-11 17:19:55 -05:00
a36d0841b5
removing 3.6 f-string ( #139 )
2018-11-11 14:43:15 -05:00
Gan Quan