165d453806
[Doc] Update README.md for pytorch PinSage example. ( #770 )
...
Add noting that the PinSage model example under
example/pytorch/recommendation only work with Python 3.6+
as its dataset loader depends on stanfordnlp package
which work only with Python 3.6+.
2019-08-16 02:23:05 -03:00
fd3d54ba98
bump up version for prerelease ( #768 )
2019-08-16 10:32:54 +08:00
cd9fb7baa0
[Model Zoo] Refactor GCN on Tox21 ( #766 )
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* [Model zoo] Model zoo (#765 )
* tox21
* fix ci
* fix ci
* fix urls to url
* add doc
* remove binary
* model zoo
* test
* markdown
* fix typo
* fix typo
* fix typo
* raise error
* fix lint
* remove unnecessary
* fix doc
* fix
* fix
* fix
* fix
* fix
* fix
* Update
* CI
* Fix
* Fix
* Fix
* Fix
* Fix
* CI
2019-08-16 02:49:25 +08:00
bdcba9c85c
setup for prerelease builds ( #763 )
2019-08-14 23:13:37 +08:00
2ee3c78c7c
[Dataset] Tox21 ( #760 )
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* tox21
* fix ci
* fix ci
* fix urls to url
* add doc
* remove binary
2019-08-14 16:55:01 +08:00
17b60e1af0
[Bugfix] EdgeBatch.edges call attempts tuple item assignment ( #747 )
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* upd
* fig edgebatch edges
* add test
* trigger
2019-08-11 04:07:41 +08:00
b2f7f0ee7c
[Model] Recurrent Relational Network (RRN) on sudoku ( #733 )
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* rrn model and sudoku
* add README
* refine the code, add doc strings
* add sudoku solver
2019-08-10 02:00:11 +08:00
e1f08644fb
[Model] Schnet & MGCN ( #726 )
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* [Model] SchNet
* [Model] SchNet model
* [Model] Schnet Model fix device-related bug
* [Model] SchNet fix bugs
* [Model] SchNet fix some bugs
* [Model] Schnet 🎨 code indent format
* [Model] SchNet ✏️ fix some typos
2019-08-07 14:08:31 +08:00
747a8beea5
[Fix] Hold NDArray reference during send() ( #740 )
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* fix NDArray reference
* fix lint
* capture NDArray in the closure
2019-08-07 13:28:41 +08:00
16061925d5
[NodeFlow] Non-uniform neighbor sampling ( #711 )
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* nonuniform sampler
* unit test
* test on out neighbors
* error checks
* lint
* fix
* clarification
* use macro switcher
* use empty array for uniform sampling
* oops
* Revert "oops"
This reverts commit a11f9ae707aaeb67fb5921c887a17d3711d5b04a.
* Revert "use empty array for uniform sampling"
This reverts commit 8526ce4cade89f2c1b09a08aca8830375ebafb31.
* re-reverting
* use a method
2019-08-07 09:42:08 +08:00
742d79a792
upd ( #741 )
2019-08-06 18:39:05 +08:00
5d3f470b72
[Feature] DGL Pooling modules ( #669 )
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* removal doc
* glob
* upd
* rm knn
* add softmax
* upd
* upd
* add broadcast and s2s
* optimize max_on
* forsaken changes to heterograph
* upd
* upd
* upd
* upd
* upd
* bugfix
* upd
* upd
* upd
* upd
* format upd
* upd format
* upd doc
* upd
* import order
* upd
* rm warnings
* fix
* upd test
* upd
* upd
* fix device
* upd
* upd
* upd
* upd
* remove 1.1
* upd
* trigger
* trigger
* add more tests
* fix device
* upd
* upd
* refactor
* fix?
* fix
* upd docstring
* refactor
* upd
* fix
* upd
* upd
* upd
* fix
* upd docs
* add shape
* refactor & upd doc
* upd doc
* upd
2019-08-06 01:43:25 +08:00
c3516f1a8e
[Network] Refactoring Communicator ( #679 )
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* Refactoring Communicator
* fix lint
* change non-const reference
* add header file
* use MemoryBuffer
* update PR
* fix bug on csr shape
* zero-copy msg_queue
* fix lint
* fix lint
* fix lint
* add header file
* fix windows build error
* fix windows build error
* update
* fix lint
* update
* fix lint
* fix lint
* add more test
* fix windows test
* update windows test
* update windows test
* update windows test
* update
* fix lint
* fix lint
* update
* update
* update
* update
* use STATUS code
* update test
* remove mem_cpy
* fix lint
* update
* finish
* ConstructNFTensor
* add test for deallocator
* update
* fix lint
2019-08-05 10:49:25 +08:00
fc9d30fae4
[Graph] add local scope function ( #735 )
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* add local scope function
* fix lint
* fix docstring
* change local_scope to local_var; add context manager
* address comments
2019-08-02 00:11:48 -04:00
e9e587b6cb
[Refactor] C random number generator ( #729 )
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* rng refactor
* fix bugs
* unit test
* remove setsize
* lint
* fix test
* use explicit instantiation instead of inlining
* stricter test
* use tvm solution
* moved python interface to dgl.random
* lint
* address comments
* make getthreadid an inline function
2019-07-31 17:54:30 +08:00
34ac2ab47b
[Fix] Fix MXNet install doc ( #732 )
2019-07-30 09:25:41 +08:00
86f28d6553
[Misc] Provide a "return 1s instead of edge IDs" option in scipy adjacency matrix ( #730 )
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* return 1 option in scipy adjacency matrix
* lint
* use dgl warning
* i'm an idiot
* lint x2
* rename
2019-07-29 21:40:09 +08:00
7ad663c3a9
[Hetero] Heterograph C++ implementation; Bipartite and Python wrapper ( #725 )
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* finish bipartite graph implementation; compiled
* finished heterograph implementation; compiled
* WIP: apis
* C API codes
* compiled
* WIP: python
* HeteroGraphIndex
* WIP: test
* add DGLContext support in ffi
* fix bug in has edge
* unittests except edge subgraph
* edge subgraph
* fix lint
* address comments
* poke ci
* try fix
* fix msvc
2019-07-27 15:22:56 -04:00
6c77f26438
[Doc] Update README.md ( #724 )
2019-07-23 15:59:03 -04:00
67dc11971f
[Refactor] Use object system for all CAPIs ( #716 )
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* WIP: using object system for graph
* c++ side refactoring done; compiled
* remove stale apis
* fix bug in DGLGraphCreate; passed test_graph.py
* fix bug in python modify; passed utest for pytorch/cpu
* fix lint
* address comments
2019-07-23 12:47:05 -04:00
b0d9e7aa43
[Refactor] Separating graph and sparse matrix operations ( #699 )
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* WIP: array refactoring
* WIP: implementation
* wip
* most csr part
* WIP: on coo
* WIP: coo
* finish refactoring immutable graph
* compiled
* fix undefined ndarray copy bug; add COOToCSR when coo has no data array
* fix bug in COOToCSR
* fix bug in CSR constructor
* fix bug in in_edges(vid)
* fix OutEdges bug
* pass test_graph
* pass test_graph
* fix bug in CSR constructor
* fix bug in CSR constructor
* fix bug in CSR constructor
* fix stupid bug
* pass gpu test
* remove debug printout
* fix lint
* rm biparate grpah
* fix lint
* address comments
* fix bug in Clone
* cpp utests
2019-07-17 17:49:38 -04:00
f79188da4c
fix. ( #712 )
2019-07-15 16:25:29 -07:00
6d42005052
[WIP][CI] Build Windows packages within virtualenv ( #709 )
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* try venv for win64
* update
* update
* trying another
* update
* update
* update
* trigger ci
* update
* update
2019-07-12 16:50:54 -07:00
9cc83b4bc7
[Bugfix] Fix nodeflow.prop_flow range check ( #700 )
2019-07-10 14:11:06 -04:00
bf3994eea6
[Model][Hotfix] DiffPool formatting fix ( #696 )
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* formatting
* formatting
2019-07-02 15:19:57 +08:00
90e78c5854
[FFI] FFI container support, custom structure extension via Object ( #693 )
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* WIP: import tvm runtime node system
* WIP: object system
* containers
* tested basic container composition
* tested custom object
* fix setattr bug
* tested object container return
* fix lint
* some comments about get/set state
* fix lint
* fix lint
* update cython
* fix cython
* ffi doc
* fix doc
2019-07-01 14:40:07 -04:00
684a61ad09
[Model] DiffPool with both DGL and tensorized operatons ( #665 )
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* diffpool original file added
* make diffpool fuse up and running
* minor tweak on tu dataset statistics method
* fix tu
* break
* delete break
* pre_org
* diffpool fuse reorg
* fix random shuffling
* fix bn
* add dgl layers
* early stopping
* add readme
* fix
* add diffpool preprocess script
* tweak tu dataset
* tweak
* tweak
* tweak
* tweak
* tweak
* preprocess dataset
* fix early stopping
* fix
* fix
* fix
* tweak
* readme
* code review
* code review
* dataset code review
* update README
* code review
* tu doc
2019-07-01 20:00:15 +08:00
fc2e166ba6
[Fix] Fix Memory Leak in Edge Softmax ( #692 )
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* Add serialization
* fix memory leak
* Revert "Add serialization"
This reverts commit e838bb1faa2503d14593d702be00514f936c9027.
* fix
2019-06-28 17:31:54 -04:00
31b1c49433
[Hetero] C++ Heterogeneous Graph Interfaces ( #663 )
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* c++ heterograph interfaces
* addressing comments
* update hetero api
* missing interfaces
* fix lint
2019-06-26 22:12:56 -04:00
8ecedfb369
[Fix] Bugfix in docs and check gradient of edge_softmax in test ( #686 )
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* upd
* Add stronger test
* Update test_nn.py
* Update test_nn.py
* trigger
* trigger
* trigger
2019-06-27 00:43:26 +08:00
c3d74e0f7f
[Fix] Fix license badge ( #671 )
...
* Add serialization
* fix broken badge
* Revert "Add serialization"
This reverts commit e838bb1faa2503d14593d702be00514f936c9027.
* fix
2019-06-20 14:49:26 +08:00
714f2e1ced
fix node id dtype ( #674 )
2019-06-20 10:53:26 +08:00
f8feee1cc6
fix install. ( #673 )
2019-06-19 14:08:35 -07:00
fe2b6ca6e8
[Text] fix test; remove torch import. ( #670 )
2019-06-18 19:30:56 -04:00
401f22cadd
[API] Heterograph ( #657 )
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* [Feature][RFC] Heterogeneous graph interface (#553 )
* heterogeneous graph interface
* lint
* disable lints
* disable lint checks
* change node_types to dict
* update
* update
* heterograph view
* message passing with types
* clarifications
* graph queries
* clarifications
* moving add_XXX to Base
* from_networkx
* register functions
* Update heterograph.py
* lint.
2019-06-17 16:59:04 +08:00
82bb9a9b6a
[README] Update speed numbers in README ( #661 )
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* update speed numbers in readme
* numbers in examples/pytorch/readme
2019-06-15 14:27:58 -07:00
11974812ca
[Backend] use new split in MXNet ( #660 )
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* use new split.
* fix.
* fix.
* add zero copy from numpy.
2019-06-15 14:08:42 -07:00
f3d3fdf8cd
add reddit example. ( #658 )
2019-06-14 22:53:59 +08:00
73e5fb552a
New installation guide for CUDA builds ( #655 )
2019-06-14 13:52:17 +08:00
4be1d3e70c
[CI] workspace and disable mx tutorial ( #656 )
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* workspace and disable mx tutorial
* try cleanws
* poke
* poke
* poke
2019-06-13 19:26:57 -04:00
be58224f0e
[CI] enable tutorial test in CI. ( #631 )
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* enable tutorial test in CI.
* reduce overhead.
2019-06-13 02:31:36 -07:00
7d61936577
update minigun to include algorithm header ( #654 )
2019-06-13 11:32:43 +08:00
2f25eac732
[Build][Release] Windows release fixes ( #650 )
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* bump up version
* conda+cuda trial
* switch conda branch
* revert
* disable cudnn
* windows cuda arch fix
* more fix
2019-06-13 09:12:00 +08:00
e8e56b3423
[Build][Win] fix mgpu include problem ( #652 )
2019-06-12 13:22:59 -04:00
8059fa6f8b
print errors if users sample from mutable graph. ( #649 )
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* give warning.
* fix.
* update error msg.
2019-06-12 17:54:02 +08:00
059b1a6d6f
[Release] Bump up version ( #636 )
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* bump up version
* conda+cuda trial
* switch conda branch
* revert
* disable cudnn
2019-06-12 16:50:05 +08:00
94ecb8eb96
[BUGFIX] copy graph index to shared memory. ( #634 )
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* copy graph index to shared memory.
* fix.
* fix.
* fix.
* use a diff name for in-csr and out-csr.
* fix lint.
* remove print.
* add test.
* add comments.
2019-06-12 01:32:25 -07:00
16ec2a8b10
we need to sync for mxnet. ( #648 )
2019-06-11 18:22:21 -07:00
d706298019
fix a bug. ( #646 )
2019-06-11 16:23:48 -07:00
e16e895d53
[Doc] fix some document warnings ( #645 )
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* fix doc
* fix some format and warnings
* fix
2019-06-11 13:41:41 -04:00
xiang song(charlie.song)