dfb10db86f
[Feature] Bag of samplers for efficient categorical sampling w/ and w/o replacement ( #1142 )
...
* upd
* upd
* lint
* upd
* upd
* lint
* upd
* refactor
* lint
* upd
* upd
* upd
* lint
* fix
* fix
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* complete test
* upd
* upd
* fix
* vir
* upd
* fix
* fuck
* fix numerical
2020-01-01 11:42:11 +08:00
162dc19a5d
Accelerate edge sampling ( #1151 )
...
* accel edge sampling.
* measure sampling time.
* attach positive.
* add neg_deg_sample.
* fix a minor bug.
* remove unnecessary code.
* Revert "add neg_deg_sample."
This reverts commit 45f3c08c87e33589563ca7e6a3ec91cb1239910e.
* Revert "attach positive."
This reverts commit 503d7821555b69b7ccfed55ce8b87ee24fff852d.
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2019-12-31 01:40:20 -08:00
61b78e6ee7
[Bug Fix]edge sample hotfix ( #1152 )
...
* hot fix
* Fix docs
* Fix ArrayHeap float overflow bug
* Fix
* Clean some dead code
* Fix
* FIx
* Add some comments
* run test
2019-12-30 19:42:57 -08:00
6731ea3af7
[KVStore] Reduce memory cost of kvstore ( #1156 )
...
* API change of kvstore
* add demo for kvstore
* update
* remove duplicated log
* change queue size
* update
* update
* update
* update
* update
* update
* update
* update
* update
* fix lint
* change name
* update
* fix lint
* update
* update
* update
* update
* change message queue size to a python argument
* change default queue size to 2GB
* OMP_NUM_THREADS=1
* add multiple NICs support for kvstore
* test
* fix lint
* update
* update
* update
* update
* update
* update
* update
* fix lint
* fix lint
* update
* update
* update
* update
* update
* update
* update
* update
* update
* update
* update
* update
* update
* update
* update
* update
* update
* update
* update
* update
* fix lint
2019-12-30 20:25:32 +08:00
4f02bb751b
[KVStore] Made kvstore can support multiple NICs ( #1150 )
...
* API change of kvstore
* add demo for kvstore
* update
* remove duplicated log
* change queue size
* update
* update
* update
* update
* update
* update
* update
* update
* update
* fix lint
* change name
* update
* fix lint
* update
* update
* update
* update
* change message queue size to a python argument
* change default queue size to 2GB
* OMP_NUM_THREADS=1
* add multiple NICs support for kvstore
* test
* fix lint
* update
* update
* update
* update
* update
* update
* update
* fix lint
* fix lint
* update
* update
* update
* update
2019-12-30 15:17:31 +08:00
f81841532f
[KG] reduce memory consumption. ( #902 )
...
* reduce memory consumption.
* fix a bug.
* fix a bug.
* fix.
2019-12-28 21:55:50 -08:00
655d75688a
fix deprecation warning ( #1147 )
2019-12-28 12:42:16 +08:00
913e324903
Add device check for sampler input ( #1145 )
...
current samplers only support working on CPU
2019-12-27 22:50:52 +08:00
d57ff78da1
[Small Fix] Change default message queue size of communicator to 2GB ( #1140 )
...
* API change of kvstore
* add demo for kvstore
* update
* remove duplicated log
* change queue size
* update
* update
* update
* update
* update
* update
* update
* update
* update
* fix lint
* change name
* update
* fix lint
* update
* update
* update
* update
* change message queue size to a python argument
* change default queue size to 2GB
* OMP_NUM_THREADS=1
2019-12-25 17:03:52 +08:00
17aab8128a
[Doc] update working with multiple backend section ( #1128 )
...
* update work with different backend section
* fix some warnings
* Update backend.rst
* Update index.rst
Co-authored-by: VoVAllen <VoVAllen@users.noreply.github.com >
2019-12-24 17:32:56 +08:00
e4ef8d1a80
[KVStore] API change of kvstore ( #1058 )
...
* API change of kvstore
* add demo for kvstore
* update
* remove duplicated log
* change queue size
* update
* update
* update
* update
* update
* update
* update
* update
* update
* fix lint
* change name
* update
* fix lint
* update
* update
* update
* update
* change message queue size to a python argument
2019-12-24 17:05:15 +08:00
41f8a162f4
[Feature Improvement]Edge Sampler w and w/o replacement ( #1116 )
...
* Add weight based edge sampler
* Can run, edge weight work.
TODO: test node weight
* Fix node weight sample
* Fix y
* Update doc
* Fix syntex
* Fix
* Fix GPU test for sampler
* Fix test
* Fix
* Refactor EdgeSampler to act as class object not function that it
can record its own private states.
* clean
* Fix
* Fix
* Fix run bug on kg app
* update
* update test
* test
* Simply python API and fix some C code
* Fix
* Fix
* Fix syntex
* Fix
* Update API description
* add replacement for edge sampler
* Now edge sampler support replacement and no-replacement
* Fix
* Fix
* change kg/app to use edge sampler with replacement config
* Update replacement algo
* Fix syntax
* Update
* Update
Co-authored-by: Da Zheng <zhengda1936@gmail.com >
2019-12-24 16:25:40 +08:00
e890a899fc
Partition a graph with HALO nodes ( #1076 )
...
* get subgraph with halo.
* add partition function.
* add comment.
* parallel partition.
* fix a compilation error.
* fix lint error.
* address comments.
* add comments.
* fix for TF.
2019-12-23 08:46:53 -08:00
0d9acc9d58
hot fix ( #1135 )
2019-12-24 00:19:25 +08:00
a1b28b3954
[Hot fix] Fix build threads ( #1133 )
...
* tf
* add builtin support
* fiix
* pytest
* fix
* fix
* fix some bugs
* fix selecting
* fix todo
* fix test
* fix test fail in tf
* fix
* fix
* fix gather row
* fix gather row
* log backend
* fix gather row
* fix gather row
* fix for pytorch
* fix
* fix
* fix
* fix
* fix
* fix tests
* fix
* fix
* fix
* fix
* fix
* fix
* fix convert
* fix
* fix
* fix
* fix inplace
* add alignment setting
* add debug option
* Revert "add alignment setting"
This reverts commit ec63fb3506ea84fff7d447a1fbdfd1d5d1fb6110.
* tf ci
* fix lint
* fix lint
* add tfdlpack
* fix type
* add env
* fix backend
* fix
* fix tests
* remove one_hot
* remove comment
* remove comment
* fix
* use pip to install all
* fix test
* fix base
* fix
* fix
* add skip
* upgrade cmake
* change version
* change ci
* fix
* fix
* fix
* fix
* fix seg fault
* fix
* fix python version
* fix
* try fix
* fix
* fix
* tf takes longer time in ci
* change py version
* fix
* fix
* fix oom
* change kg env
* change kg env
* 啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊
* 我再也不搞各种乱七八糟环境了……
* use pytest
* Chang image
* try node
* try
* fix
* try new ci
* try new ci
* try new ci
* try new ci
* ci
* try
* try
* fix
* hot fix
* fix
* fix cpp test
* add comments
2019-12-23 21:42:59 +08:00
2ab4d0e10f
[Doc] Hotfix for README ( #1119 )
2019-12-23 19:22:38 +08:00
7b98e899f3
[CI] Try new CI ( #1124 )
...
* tf
* add builtin support
* fiix
* pytest
* fix
* fix
* fix some bugs
* fix selecting
* fix todo
* fix test
* fix test fail in tf
* fix
* fix
* fix gather row
* fix gather row
* log backend
* fix gather row
* fix gather row
* fix for pytorch
* fix
* fix
* fix
* fix
* fix
* fix tests
* fix
* fix
* fix
* fix
* fix
* fix
* fix convert
* fix
* fix
* fix
* fix inplace
* add alignment setting
* add debug option
* Revert "add alignment setting"
This reverts commit ec63fb3506ea84fff7d447a1fbdfd1d5d1fb6110.
* tf ci
* fix lint
* fix lint
* add tfdlpack
* fix type
* add env
* fix backend
* fix
* fix tests
* remove one_hot
* remove comment
* remove comment
* fix
* use pip to install all
* fix test
* fix base
* fix
* fix
* add skip
* upgrade cmake
* change version
* change ci
* fix
* fix
* fix
* fix
* fix seg fault
* fix
* fix python version
* fix
* try fix
* fix
* fix
* tf takes longer time in ci
* change py version
* fix
* fix
* fix oom
* change kg env
* change kg env
* 啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊
* 我再也不搞各种乱七八糟环境了……
* use pytest
* Chang image
* try node
* try
* fix
* try new ci
* try new ci
* try new ci
* try new ci
* ci
* try
* try
* fix
2019-12-23 17:28:06 +08:00
d30a69bf27
[Backend] TF backend ( #978 )
...
* tf
* add builtin support
* fiix
* pytest
* fix
* fix
* fix some bugs
* fix selecting
* fix todo
* fix test
* fix test fail in tf
* fix
* fix
* fix gather row
* fix gather row
* log backend
* fix gather row
* fix gather row
* fix for pytorch
* fix
* fix
* fix
* fix
* fix
* fix tests
* fix
* fix
* fix
* fix
* fix
* fix
* fix convert
* fix
* fix
* fix
* fix inplace
* add alignment setting
* add debug option
* Revert "add alignment setting"
This reverts commit ec63fb3506ea84fff7d447a1fbdfd1d5d1fb6110.
* tf ci
* fix lint
* fix lint
* add tfdlpack
* fix type
* add env
* fix backend
* fix
* fix tests
* remove one_hot
* remove comment
* remove comment
* fix
* use pip to install all
* fix test
* fix base
* fix
* fix
* add skip
* upgrade cmake
* change version
* change ci
* fix
* fix
* fix
* fix
* fix seg fault
* fix
* fix python version
* fix
* try fix
* fix
* fix
* tf takes longer time in ci
* change py version
* fix
* fix
* fix oom
* change kg env
* change kg env
* 啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊
* 我再也不搞各种乱七八糟环境了……
* use pytest
* Chang image
2019-12-20 15:56:51 +08:00
cf9ba90fd4
[Chem] ACNN and various utilities ( #1117 )
...
* Add several splitting methods
* Update
* Update
* Update
* Update
* Update
* Fix
* Update
* Update
* Update
* Update
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Finally
* CI
2019-12-19 11:54:40 +08:00
6beef85b07
upd ( #1113 )
2019-12-17 15:24:04 +08:00
41114b8758
[Doc] Tree-LSTM in DGL, edit pass for readability ( #1031 )
...
* [Doc] Tree-LSTM in DGL, edit pass for readability
Edit for grammar and style.
How about deleting the last line? "Besides, you..." It needs a transition or some context.
* Update tutorials/models/2_small_graph/3_tree-lstm.py
* Update tutorials/models/2_small_graph/3_tree-lstm.py
2019-12-17 14:14:18 +08:00
632a9af8f9
[Feature] No-Uniform Edge Sampler ( #1087 )
...
* Add weight based edge sampler
* Can run, edge weight work.
TODO: test node weight
* Fix node weight sample
* Fix y
* Update doc
* Fix syntex
* Fix
* Fix GPU test for sampler
* Fix test
* Fix
* Refactor EdgeSampler to act as class object not function that it
can record its own private states.
* clean
* Fix
* Fix
* Fix run bug on kg app
* update
* update test
* test
* Simply python API and fix some C code
* Fix
* Fix
* Fix syntex
* Fix
* Update API description
2019-12-16 11:26:34 -08:00
dd65ee211e
[CI] Change tests for flexibility
...
* change ci image
* fix
* force bash
* fix
* fix python version
* fix
* fix
* fix
* update gpu
* cuda
* jenkins
* fix build sh
* fix
* Revert "fix"
This reverts commit 6b091914b3ef6b4300fa662ee375aa4b27944f5c.
* try fix
* fix
* Revert "fix"
This reverts commit e42c3035fa4974c6b197aaba0748f7b45113ddaa.
* try fix
* fix
* fix
* fix
* fix
* fix
* fix
* fix tests
* try fix
* fix
* fix
* fix
* fix
* fix
* fix
* fix ctx problem
* fix many tests
* fix typo
* add backend
* move to pytorch folder
* fix?
* fix ci
* try skip
* try false
* try?
* try?
* Revert to 7d9a52f
* fix various
* fix lint
* Revert Jenkinsfile
* revert env
* revert env
* address comment
* remove file
2019-12-16 14:54:37 +08:00
f36a451420
[Doc] Old wines new title, edit for grammar and style ( #1027 )
...
* Old wines new title, edit for grammar and style
new descriptive title here and an edit pass @aaronmarkham
* Update tutorials/models/4_old_wines/README.txt
2019-12-16 11:24:58 +08:00
2448751c8e
Fixed the training file ( #1109 )
2019-12-14 18:20:05 +08:00
d16fb3ff9d
[Example] GCMC in PyTorch ( #1101 )
...
* upd
* fix
* upd
* upd
* upd
* fix
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
2019-12-14 08:18:48 +08:00
1552090a24
set default backend. ( #1104 )
2019-12-13 08:30:14 -08:00
adea4ba1d0
fix doc. ( #1100 )
2019-12-13 05:24:37 -08:00
869093e890
fix doc of EdgeSampler. ( #1093 )
2019-12-12 19:15:06 -08:00
4713a33218
Update README.md ( #1095 )
...
Extra open brace in the .bibtex entry results in an error
2019-12-13 00:35:57 +08:00
b599f6ed96
Update ( #1090 )
2019-12-11 13:39:18 +08:00
6ae93e5c6a
[Bug] Fix #1088 ( #1089 )
...
* [Bug] Fix #1088
* fix
* add comment
2019-12-11 10:27:57 +08:00
48c7ec4427
[Doc] Fix gcn tutorial ( #1080 )
...
* don't have activation.
* add evaluation.
* address comment.
2019-12-10 02:10:51 -08:00
870857cfba
udp ( #1083 )
2019-12-09 14:52:20 +08:00
a5a052b5bf
[Fix] Fix #1078 , #1077 and add nightly build to readme
2019-12-09 00:03:35 +08:00
fa0ee46a01
[hotfix] node id validity check ( #1073 )
...
* fix
* improve
* fix lint
* upd
* fix
* upd
2019-12-06 01:36:41 +08:00
bc4f4352d1
[Chem Model Zoo] Hot fix for README ( #1071 )
...
* Fix outdated example
* Hot fix
2019-12-05 14:37:06 +08:00
7784f0668d
[Doc] Small graphs readme.txt, edit pass ( #1030 )
...
* [Doc] Small graphs readme.txt, edit pass
Edit for grammar and style. Should this be an .rst on .txt?
* Update README.txt
2019-12-05 13:48:39 +08:00
fff3dd9593
[Example] add graphwriter pytorch example ( #1068 )
...
* upd
* fig edgebatch edges
* add test
* trigger
* add graphwriter pytorch example
* fix line break in graphwriter README
* upd
* fix
2019-12-05 02:44:15 +08:00
35653ddd0a
[Fix] Fix karate due to networkx version change
2019-12-04 22:02:10 +08:00
5fc7eb6d97
[Doc] Generative models, edit pass ( #1035 )
...
* [Doc] Generative models, edit pass
Edit for grammar and style. Can you clarify "Instead of and/or"?
* Update tutorials/models/3_generative_model/5_dgmg.py
* Update tutorials/models/3_generative_model/5_dgmg.py
Co-Authored-By: Aaron Markham <markhama@amazon.com >
* Update tutorials/models/3_generative_model/5_dgmg.py
Co-Authored-By: Aaron Markham <markhama@amazon.com >
* Update tutorials/models/3_generative_model/5_dgmg.py
Co-Authored-By: Aaron Markham <markhama@amazon.com >
* Update tutorials/models/3_generative_model/5_dgmg.py
Co-Authored-By: Aaron Markham <markhama@amazon.com >
2019-12-03 09:38:47 +08:00
f45178c334
[Doc] Generative models, edit for readability ( #1033 )
...
Edit pass for grammar and style
2019-12-02 14:54:10 +08:00
65a904c565
update instruction. ( #1052 )
2019-12-01 15:25:42 -08:00
ae743dcc02
remove tqdm. ( #1051 )
2019-12-01 14:41:45 -08:00
dca0e376e0
[KG][Score Func] Update TransE with L2 distance support. ( #1059 )
...
* Add L2 distance score for TransE
* Update README.md
* Use linalg.gemm to speedup mx l2 dist
* Fix
2019-12-01 14:03:36 -08:00
d6dfaa9b74
[Doc] Capsule network tutorial, edit pass ( #1026 )
...
Edited for grammar and style.
2019-12-01 22:26:51 +08:00
10b104dd35
[Doc] Transformer tutorial, edit for readability ( #1025 )
...
Edit pass for grammar and style
2019-12-01 11:25:51 +08:00
fdc58a8996
[Hotfix] Fix GAT example and clarify the usage of early stop ( #1065 )
...
* upd
* rm redundancy:
* upd
2019-11-30 23:43:15 +08:00
a2b8d8e4e7
[Doc] Giant graph tutorial edit for grammar and style ( #1020 )
...
* Edit for readability
* giant_graph_readme edit for grammar
* NodeFlow and Sampling edit pass for grammar
* Update tutorials/models/1_gnn/9_gat.py
* Update tutorials/models/1_gnn/9_gat.py
2019-11-30 12:31:59 +08:00
dd09f15fa7
[Doc] Stochastic steady-state embedding (SSE) Edit for readability
...
Revisions for grammar and style
2019-11-30 11:37:17 +08:00
Zihao Ye