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Minjie Wang 1a6dd73552 [Doc] other colab tutorials (#5189) 
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* Created using Colaboratory

* Created using Colaboratory

* add link

* Created using Colaboratory

* add link
 2023-01-17 14:53:48 +08:00
Minjie Wang 2c143dafab [Doc] Colab tutorial for graph transformer (#5188) 
* Created using Colaboratory

* add gt nblink

* Created using Colaboratory

* update

* Add nblink
 2023-01-17 14:28:01 +08:00
Minjie Wang 2a8062311f [Doc] Colab tutorial for graph diffusion (#5185) 
* Created using Colaboratory

* add diffusion notebook

* update
 2023-01-17 14:26:19 +08:00
Hongzhi (Steve), Chen 16dd9584e6 [Sparse] Polish softmax.py. (#5182) 
* polish

* [Sparse] Polish softmax.py.

* fix parameter and example

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-17 14:22:10 +08:00
Hongzhi (Steve), Chen 82eb3d71a6 [Sparse] polish strings of matmul.py and sddmm.py. (#5177) 
* polish mm docstrings

* fix typo

* small fix.

* fix

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-17 13:55:07 +08:00
Hongzhi (Steve), Chen 84aae0863f [Sparse] Polish reduction.py. (#5180) 
* polish

* example

* revert_example

* pylint

* revert_input

* order

* add input as parameter

* example

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-17 13:34:11 +08:00
Hongzhi (Steve), Chen b9c8d458d8 move to cpu (#5187) 
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-17 13:17:56 +08:00
czkkkkkk f554bc4873 [Sparse] Polish the docstring of SparseMatrix.csr() and SparseMatrix.csc() (#5179) 
* [Sparse] Polish the docstring of SparseMatrix.csr() and SparseMatrix.csc()

* Update sparse_matrix.py

* Update

Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com>
 2023-01-17 13:12:48 +08:00
Minjie Wang a1a43d98e8 [Doc] Update notebook (#5184) 2023-01-17 11:23:32 +08:00
Hongzhi (Steve), Chen fa74ea706a [Sparse] Polish diag_matrix.py and sparse_matrix.py. (#5178) 
* polish diagonal

* polsih

* more

* more

* add paramaters-back

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-17 10:46:11 +08:00
Minjie Wang 0868f1796d [Doc] sparse lib tutorial and colab links (#5181) 
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* nbsphinx & nblink

* Created using Colaboratory

* update notebook

* minor update
 2023-01-16 18:59:19 +08:00
Rhett Ying 0c5d6f1b00 [BUILD] enable dgl sparse build in default (#5175) 
* enable dgl sparse build in default

* disable sparse build on cugraph

* update
 2023-01-16 14:01:39 +08:00
Quan (Andy) Gan 27010dbc55 [Sparse] Sparse matrix subtraction (#5164) 
* use NotImplemented

* format

* sparse sub

* address comments

* lint

* Update elementwise_op_diag.py

* ugh

Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com>
 2023-01-16 11:37:42 +08:00
czkkkkkk 419fb8151b [Sparse] Use X to represent dense tensors in sddmm (#5174) 
* [Sparse] Use X to represent dense tensors in sddmm

* indent

* pylint: disable=invalid-name

Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com>
 2023-01-15 11:52:06 +08:00
Quan (Andy) Gan acc567aa08 [Sparse] Support sparse matrix dividing scalar (#5173) 
* use NotImplemented

* format

* extend to pytorch scalar

* sparse div scalar

* oops

* Apply suggestions from code review

Co-authored-by: Mufei Li <mufeili1996@gmail.com>

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2023-01-13 22:54:58 +08:00
czkkkkkk b5c5c860f6 [Sparse] Refactor matmul interface. (#5162) 
* [Sparse] Refactor matmul interface.

* Update
 2023-01-13 20:08:40 +08:00
Hongzhi (Steve), Chen 9334421d2b [Sparse] Rename as_sparse to to_sparse, dense to to_dense. (#5170) 
* as_sp_to_sp

* dense

* revert_mock

* test

* revert

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-13 17:03:20 +08:00
Quan (Andy) Gan 5f5db2dfc7 [Sparse] Make functions compatible with PyTorch scalar tensors (#5163) 
* use NotImplemented

* format

* extend to pytorch scalar

* reformat

* reformat

* lint
 2023-01-13 14:00:52 +08:00
czkkkkkk 1d1b08b044 [Sparse] Fix sddmm docstring (#5169) 2023-01-13 13:53:03 +08:00
Rhett Ying 85bd0cdeca [Doc] remove deprected Node/EdgeDataLoader (#5171) 2023-01-13 13:22:16 +08:00
Rhett Ying f65bd2d6f6 [CI] fix device configure when run on GPU (#5154) 2023-01-13 08:39:04 +08:00
Xin Yao cdfd1e382f Delete train_sampling_unsupervised.py (#5161) 2023-01-12 11:15:48 -08:00
Quan (Andy) Gan 8abf9d54e3 [Sparse] Use NotImplemented to let Python dispatch types (#5160) 
* use NotImplemented

* add TypeError tests

* format

* lint

* fix type

* fix docstring

* lint

* remove redundant condition
 2023-01-12 21:12:29 +08:00
nv-dlasalle 751b4c269d [Bugfix] Replace global cudaStream in Filter with runtime calls (fix #5153) (#5157) 
* Add failing unit test

* Add fix

* Remove extra newline

* skip cpu test

Co-authored-by: Xin Yao <yaox12@outlook.com>
 2023-01-12 16:27:29 +08:00
Quan (Andy) Gan 84e4d0215f change regex (#5158) 2023-01-12 15:04:22 +08:00
czkkkkkk bff32a0986 [Sparse] Use efficient implementation for Diag @ Sparse and Sparse @ Diag. (#5147) 2023-01-12 11:53:46 +08:00
czkkkkkk 21c4c29a36 [Sparse] Reduce peak memory of SpSpAdd. (#5143) 
* [Sparse] Reduce peak memory usage of SpSpAdd

* Update

* Update
 2023-01-12 11:53:04 +08:00
Hongzhi (Steve), Chen b743f767b6 fix (#5151) 
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-12 10:13:18 +08:00
Quan (Andy) Gan f94fa9d975 typo (#5133) 2023-01-11 22:21:11 +08:00
Hongzhi (Steve), Chen f1ed5d6de7 blabla (#5152) 
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-11 20:21:55 +08:00
Hongzhi (Steve), Chen 2a78e48f4e polish (#5150) 
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-11 19:55:38 +08:00
Hongzhi (Steve), Chen 41b4180950 Polish (#5149) 
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-11 19:31:08 +08:00
Hongzhi (Steve), Chen 9c647d8095 [Sparse] Add elementwise mul and div method, and polish the python doc. (#5142) 
* add mul and div

* polish

* equivalent

* indent

* double

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-11 19:07:32 +08:00
Chang Liu 491c19fe4a [Bugfix] Fix the call of tar.extractall() method (#5139) 2023-01-10 23:11:56 -08:00
Rhett Ying 46455328e4 [CI] fix bugs for multigpu benchmarks (#5140) 2023-01-11 14:50:37 +08:00
Hongzhi (Steve), Chen d837029925 try again. (#5141) 
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-11 12:59:50 +08:00
Xin Yao e032de5848 [Bugfix] Avoid initializing CUDA context at importing (#5134) 
* Avoid initializing CUDA at importing

* renaming
 2023-01-11 12:30:20 +08:00
Hongzhi (Steve), Chen 1a33ee99d3 [Sparse] Update doc string of element-wise ops for DiagMatrix and SparseMatrix. (#5136) 
* doc

* minor

* black

* no-lint

* reorg

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-11 12:08:24 +08:00
Hongzhi (Steve), Chen c5119480f2 [Sparse] Remove unnecessary API exposure. (#5135) 
* remove unnecessary exposure.

* remove_add_power

* remove_warning

* reorder

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
 2023-01-11 11:47:14 +08:00
Quan (Andy) Gan c6228c0118 update suffix (#5128) 2023-01-10 09:56:09 +08:00
Rhett Ying b7042a141c [BugFix] fix unexpected exception when agg_type is GCN and bias disabled (#5127) 
* [BugFix] fix unexpected exception when agg_type is GCN and bias is disabled

* Update sageconv.py

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2023-01-10 09:05:44 +08:00
TrellixVulnTeam 5c6af80444 CVE-2007-4559 Patch (#5122) 
* Adding tarfile member sanitization to extractall()

* Update utils.py

Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com>
 2023-01-09 11:49:10 +08:00
Quan (Andy) Gan f1fb859f99 bump version to 1.0 (#5123) 2023-01-09 11:28:26 +08:00
Quan (Andy) Gan 580c702417 [DataLoader] Allow batch_size=None for GraphDataLoader (#4483) 
* overwrite default_collate_fn

* Update dataloader.py

* Update dataloader.py

* Update dataloader.py

* Update dataloader.py

* Update test_dataloader.py

* revert the test code being reverted in #4956
 2023-01-09 00:44:46 +08:00
bgawrych e296c468b2 [Optimization] Optimize bias term in SageConv layer (#4747) 
* Optimize bias term in sageconv

* fix lint

* Remove bias sharing

* Update sageconv.py

Co-authored-by: Bartlomiej Gawrych <barlomiej.gawrych@intel.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2023-01-08 13:06:46 +08:00
peizhou001 56ffb650fe [API Deprecation]Deprecate contrib module (#5114) 2023-01-06 20:16:01 +08:00
peizhou001 436de3d120 [API Deprecation] Remove _dataloading and tgcn example (#5118) 2023-01-06 19:51:55 +08:00
Mufei Li c8bc558880 [Sparse] Remove SparseMatrix.indices and add device/dtype conversions (#5108) 
* Update

* Update

* Update

* lint

* lint

* Update

* CI

* Update diag_matrix.py

* Update sparse_matrix.py

* Update sparse_matrix.py

Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>
Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com>
 2023-01-06 17:37:13 +08:00
peizhou001 c55ab2d147 deprecate candidates in dataloader (#5117) 2023-01-06 16:18:32 +08:00
peizhou001 3a2a5031e9 [API Deprecation]Deprecate candidates in dgl.distributed (#5116) 2023-01-06 16:17:44 +08:00