b8ed4d9ba3
[Misc] Revert status.py ( #5348 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-02-21 14:00:08 +08:00
e4e0132972
[Misc] Add debug output to avoid silent failure. ( #5347 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-02-21 13:42:00 +08:00
0127a2ea4d
[Misc] Update Jenkins status. ( #5345 )
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* update
* polish
* polish
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-02-21 12:29:00 +08:00
e330954ca6
[Misc] Print jenkins response for test. ( #5344 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-02-21 11:32:29 +08:00
deed945625
[Misc] Revert jenkins update change and add build url in log. ( #5343 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-02-21 11:18:05 +08:00
f87e98e4b5
Update Jenkins response status ( #5342 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-02-21 11:06:56 +08:00
f0759a96ee
[Misc] Auto-reformat test/. ( #5324 )
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* auto-format-test
* more
* remove
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-02-19 22:50:37 +08:00
74c9d27d16
[Misc] Auto-format tests. ( #5313 )
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* [Misc] Auto-format tests.
* more
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-02-17 23:33:44 +08:00
86193c26f7
[Misc] Reorg python test (with backend) according to the guideline. ( #5312 )
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* rename
* remove test transpose
* udpate
* rename
* cleanup
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-02-17 16:11:39 +08:00
d9e550369f
[Misc] Reorg python test according to the guideline. ( #5307 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-02-17 16:08:20 +08:00
2bf2566fed
remove ( #5309 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-02-17 12:14:02 +08:00
1329be9606
[Misc] Fix build warnings ( #5303 )
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Co-authored-by: songqing.zhang <songqing.zhang@shopee.com >
2023-02-16 16:44:50 +08:00
2bbca12ad5
[bugfix] Fix assertions in /src/runtime/workspace.h and expand unit tests for sparse optimizer ( #5299 )
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* Fix assertions for size 0 workspaces
* Expand unit test to cover case of communication
* Fixes
* Format
* Fix c++ formatting
2023-02-16 13:43:03 +08:00
a5e3139155
Set USE_LIBXSMM default to OFF. ( #5287 )
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* Set USE_LIBXSMM default to OFF.
* update
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Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2023-02-16 13:08:11 +08:00
19b3cea166
[Model] Update CuGraphRelGraphConv to use pylibcugraphops=23.02 ( #5217 )
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* update cugraph_relgraphconv
* update equality test
* update cugraph rgcn example
* update RelGraphConvAgg based on latest API changes
* enable fallback option to fg when fanout is large
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Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2023-02-15 20:11:20 +08:00
fb8677b419
[Test] Move example test from unit test to examples ( #5290 )
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* move example test from unit test to examples
* oops
* oops
* ok
2023-02-14 16:25:05 +08:00
432c71ef25
Code changes to fix order sensitivity of the pipeline ( #5288 )
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Following changes are made in this PR.
1. In dataset_utils.py, when reading edges from disk we follow the order defined by the STR_EDGE_TYPE key in the metadata.json file. This order is implicitly used to assign edgeid to edge types. This same order is used to read edges from the disk as well.
2. Now the unit test framework will also randomize the order of edges read from the disk. This is done for the edges when reading from the disk for the unit tests.
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2023-02-13 10:56:26 -08:00
f62669b05c
enable sparse on windows and mac ( #5277 )
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* enable sparse on windows and mac
* that was stupid
* let's see what's going on..
* [Sparse] Fix the import error on Mac OS.
When using template functions that are defined in source files from DGL,
the loader of MacOS somehow cannot find their definitions. This fix simply
avoids depending on template functions from DGL headers.
With this fix, the sparse tests all pass on the MAC environment.
* ok this is the problem
* make errors clearer
* uh
* test
* Update __init__.py
* disabling ddp on windows
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Co-authored-by: czkkkkkk <zekucai@gmail.com >
2023-02-13 13:16:17 +08:00
465828cdbc
[CI] pre-install required py packages in image for unit/tutorial test ( #5276 )
2023-02-10 19:11:30 +08:00
f0b7cc96bd
[Performance]Add concurrent cpu id hashmap ( #5241 )
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Add Id hash map
2023-02-09 08:51:08 +08:00
5598503aa0
[Transform] Add SVDPE Transform Module ( #5121 )
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* add SVD positional encoding
* modify importing module
* Fixed certain problems
* Change the test unit to a nonsigular one
* Fixed typo and make accord with lintrunner
* added svd_pe into dgl.rst
* Modified dgl.rst
2023-02-08 12:29:03 +08:00
b3308ae795
Cleanup mock_sparse related code. ( #5230 )
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* remove_mock_sparse_example
* mock_sparse_test
* remove_mock_sparse
---------
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2023-02-01 15:17:14 +08:00
0c5d6f1b00
[BUILD] enable dgl sparse build in default ( #5175 )
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* enable dgl sparse build in default
* disable sparse build on cugraph
* update
2023-01-16 14:01:39 +08:00
27010dbc55
[Sparse] Sparse matrix subtraction ( #5164 )
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* use NotImplemented
* format
* sparse sub
* address comments
* lint
* Update elementwise_op_diag.py
* ugh
Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com >
2023-01-16 11:37:42 +08:00
acc567aa08
[Sparse] Support sparse matrix dividing scalar ( #5173 )
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* use NotImplemented
* format
* extend to pytorch scalar
* sparse div scalar
* oops
* Apply suggestions from code review
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2023-01-13 22:54:58 +08:00
b5c5c860f6
[Sparse] Refactor matmul interface. ( #5162 )
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* [Sparse] Refactor matmul interface.
* Update
2023-01-13 20:08:40 +08:00
9334421d2b
[Sparse] Rename as_sparse to to_sparse, dense to to_dense. ( #5170 )
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* as_sp_to_sp
* dense
* revert_mock
* test
* revert
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2023-01-13 17:03:20 +08:00
5f5db2dfc7
[Sparse] Make functions compatible with PyTorch scalar tensors ( #5163 )
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* use NotImplemented
* format
* extend to pytorch scalar
* reformat
* reformat
* lint
2023-01-13 14:00:52 +08:00
8abf9d54e3
[Sparse] Use NotImplemented to let Python dispatch types ( #5160 )
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* use NotImplemented
* add TypeError tests
* format
* lint
* fix type
* fix docstring
* lint
* remove redundant condition
2023-01-12 21:12:29 +08:00
751b4c269d
[Bugfix] Replace global cudaStream in Filter with runtime calls ( fix #5153 ) ( #5157 )
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* Add failing unit test
* Add fix
* Remove extra newline
* skip cpu test
Co-authored-by: Xin Yao <yaox12@outlook.com >
2023-01-12 16:27:29 +08:00
bff32a0986
[Sparse] Use efficient implementation for Diag @ Sparse and Sparse @ Diag. ( #5147 )
2023-01-12 11:53:46 +08:00
491c19fe4a
[Bugfix] Fix the call of tar.extractall() method ( #5139 )
2023-01-10 23:11:56 -08:00
580c702417
[DataLoader] Allow batch_size=None for GraphDataLoader ( #4483 )
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* overwrite default_collate_fn
* Update dataloader.py
* Update dataloader.py
* Update dataloader.py
* Update dataloader.py
* Update test_dataloader.py
* revert the test code being reverted in #4956
2023-01-09 00:44:46 +08:00
56ffb650fe
[API Deprecation]Deprecate contrib module ( #5114 )
2023-01-06 20:16:01 +08:00
c8bc558880
[Sparse] Remove SparseMatrix.indices and add device/dtype conversions ( #5108 )
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* Update
* Update
* Update
* lint
* lint
* Update
* CI
* Update diag_matrix.py
* Update sparse_matrix.py
* Update sparse_matrix.py
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com >
2023-01-06 17:37:13 +08:00
c55ab2d147
deprecate candidates in dataloader ( #5117 )
2023-01-06 16:18:32 +08:00
3a2a5031e9
[API Deprecation]Deprecate candidates in dgl.distributed ( #5116 )
2023-01-06 16:17:44 +08:00
9890201d58
[Dist] Allow reading and writing single-column vector Parquet files. ( #5098 )
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* Allow reading and writing single-column vector Parquet files.
These files are commonly produced by Spark ML's feature processing code.
* [Dist] Only write single-column vector files for Parquet in tests.
2023-01-05 20:37:28 +08:00
9169fc3541
[Sparse] Polish sparse matrix creation functions ( #5093 )
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* update
* Update
* Update
* Update
* Update
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2023-01-03 22:59:57 +08:00
0698e91a0e
[Sparse] Use Pytorch dense computation in SpMM tests ( #5096 )
2023-01-03 22:26:06 +08:00
774709d399
[Dist] Add support for Parquet-formatted edges files, remove some assumptions on edge file number. ( #5051 )
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* [Dist] Add support for Parquet-formatted edges files, remove some assumptions on edge file number.
* [Dist] Add parquet edges option to unit tests.
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2023-01-03 16:01:50 +08:00
cd817a1a00
[NN] Add SpatialEncoder and SpatialEncoder3d ( #4991 )
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* Add SpatialEncoder and SpatialEncoder3d
* Optimize the code execution efficiency
* Fixed certain problems according to Dongyu's suggestions.
* Fix an error about probability of division by zero in PathEcoder; Change certain designs in SpatialEncoder
* Fix a typo
* polish the docstring
* fix doc
* lint
Co-authored-by: Ubuntu <ubuntu@ip-172-31-14-146.ap-northeast-1.compute.internal >
Co-authored-by: rudongyu <ru_dongyu@outlook.com >
2023-01-03 14:02:14 +08:00
ce378327c7
fix bf16 tests ( #5089 )
2022-12-29 21:36:39 +08:00
37bd092587
[Sparse] Namespace migration and doc update ( #5088 )
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* update
* lint
* lint
* comments
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2022-12-29 20:34:29 +08:00
255ad1b35b
[Sparse] New print for SparseMatrix and DiagMatrix ( #5085 )
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* new print func
* lintrunner
2022-12-29 15:38:10 +08:00
025e43210f
[Sparse] Add tests for sparse examples; Migrate from mock_sparse to mock_sparse2 ( #5073 )
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* pass gcn
* example tests
* pass gcnii, hgnn, sgc, sign
* black
* test file
* add torchmetrics
* migrate appnp, c_and_s, twirls
* fix style
* minor fix
* fix hypergraphatt and twirls
* pass gat
* fix torchmetric
* lintrunner
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-12-29 08:55:25 +08:00
14429df661
[Sparse] Support BSpMM and BSDDMM ( #5079 )
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* [Sparse] Support BSpMM and BSDDMM
* Update SpMM and SDDMM error messages
* Use TORCH_CHECK
* Update error string
2022-12-28 17:14:12 +08:00
fa5ff2fceb
[Sparse] Add coalesce and has_duplicate to SparseMatrix ( #5071 )
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* add coalesce() and has_duplicate()
* Add duplicate check in spspmm
* black
* fix
* clang-format
* lintrunner
* minor fix
* fix
2022-12-28 13:10:10 +08:00
8c3e7830dc
[Sparse] Elementwise multiplication of a SparseMatrix object by a scalar ( #5076 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2022-12-28 09:37:44 +08:00
0f1bcd9927
[Sparse] Softmax based on Reduction and BroadcastOp ( #5067 )
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* Update
* update
* Update
* Update
* Update
* format
* Update
* lint
* Update
* lint
* CI
* CI
* Update
* address comments
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2022-12-27 14:50:15 +08:00
Hongzhi (Steve), Chen