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fix-gpu-sampling-doc
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27 次代码提交

作者 SHA1 备注 提交日期
Hongzhi (Steve), Chen 89b321b847 [Misc] Rename number_of_edges and number_of_nodes to num_edges and num_nodes. (#5488) 
* nn-only

* data-only

---------

Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>
 2023-03-28 12:58:54 +08:00
Hongzhi (Steve), Chen 63ac788ff4 auto-reformat-nn (#5319) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>
 2023-02-19 08:33:30 +08:00
Rhett Ying b7042a141c [BugFix] fix unexpected exception when agg_type is GCN and bias disabled (#5127) 
* [BugFix] fix unexpected exception when agg_type is GCN and bias is disabled

* Update sageconv.py

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2023-01-10 09:05:44 +08:00
bgawrych e296c468b2 [Optimization] Optimize bias term in SageConv layer (#4747) 
* Optimize bias term in sageconv

* fix lint

* Remove bias sharing

* Update sageconv.py

Co-authored-by: Bartlomiej Gawrych <barlomiej.gawrych@intel.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2023-01-08 13:06:46 +08:00
peizhou001 ab0c0ec68f [API Deprecation] Deprecate candidates in convert module (#4988) (#5115) 2023-01-06 14:45:52 +08:00
peizhou001 611393021a [API Deprecation] Remove candidates in DGLGraph (#4946) 2022-12-01 16:41:53 +08:00
Mufei Li 6d9433b04f [Transform] [Doc] Rename transform to transforms and update doc (#3765) 
* Update

* Update

* Update

* Fix

* Update

* Update

* Update

* Fix
 2022-02-24 21:28:15 +08:00
KoyamaSohei fa343873a8 Fix docs on GraphSAGE normalization (#3711) 
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2022-02-07 17:56:04 +08:00
Jeremy Goh 25c9221b83 Add check for aggregator_type enum in SAGEConv init (#3691) 
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2022-02-03 12:02:35 +08:00
Jeremy Goh 8f5baa15e4 [Doc] Fix spelling, references and update info on building docs (#3682) 
* Fix ref to message-passing guide

* Fix pygments and spacing

* Update build documentation steps in README.md

* Use links

* Adjust parameters in SAGEConv docstring in same order as init

* Fix spelling error

* Change doc link
 2022-01-25 17:22:18 +08:00
WangYQ 0851b4df5d Sageconv doc (#3093) 
* revise the doc of forward function in SAGEConv

* remove trailing space
 2021-07-05 09:25:56 +08:00
Quan (Andy) Gan fcfe52aee5 fix residual (#2962) 2021-06-01 13:50:39 +08:00
Zihao Ye edf644633d [performance] Optimize the association order of AXW in GraphSAGE. (#2747) 
* upd

* lint

* upd

* upd

* compatibility

* upd

* upd

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2021-03-19 01:41:33 +08:00
Mufei Li 3ca52b1e59 [Fix] Various Fix after Bug Bash (#2620) 
* update

* Misc fix

* Update
 2021-02-05 17:34:16 +08:00
Tong He 0855d25501 [NN] Support scalar edge weight for GraphConv, SAGEConv and GINConv (#2557) 
* add edge weight in forward

* fix lint

* fix

* fix

* address comments

* add utils

* add util to normalize in gcn way

* fix lint

* add unittest

* fix lint

* fix docstring

* fix docstring

* address comments

* improve notation consistence

* use preferred fn
 2021-01-26 23:34:12 +08:00
Junki Ishikawa 6b0d42db15 Fix typo (#2235) 
Co-authored-by: Chao Ma <mctt90@gmail.com>
 2020-09-25 16:40:22 +08:00
Tianjun Xiao 65866989c0 [NN] [Doc] Fix nn api doc (#2047) 
* fix mxnet nn doc and no note on chebconv

* change notes to note to highlight
 2020-08-18 23:47:16 +08:00
Tianjun Xiao 4672c022a8 [hotfix] no in-degree check on sage (#2014) 
* no degre check on sage

* fix pytest

* no in degree check for heteroconv
 2020-08-13 13:11:55 +08:00
Tianjun Xiao 69f5869f3b [Doc] NN doc refactor Conv Layers (#1672) 
* go through gcn, relgcn

* fix tagconv formula

* fix doc in sageconv

* fix sgconv doc

* replace hat with tilde

* more comments on gmmconv

* fix agnnconv chebconv doc

* modify nnconv doc

* remove &

* add nn conv examples

* Rebase master

* More merge conflicts

* check homo

* add back self loop for some convs, check homo in tranform

* add example for denseconv

* add example and doc for dotgat and cfconv

* check in-degree for graphconv

* add language fix

* gconv address all comments

* another round of change based on api template

* change agnn

* go through agnn, appnp, atomic, cf, cheb, dense, gat, sage modules

* finish pytorch part of nn conv

* mxnet graphconv done

* tensorflow graphconv works

* add new modules into doc

* add comments to not split code

* refine doc

* resr

* more comments

* more fix

* finish conv and dense conv part api

* pylint fix

* fix pylink

* fix pylint

* more fix

* fix

* fix test fail because zere in degree

* fix test fail

* sage is not update for mxnet tf

Co-authored-by: Ubuntu <ubuntu@ip-172-31-0-81.us-east-2.compute.internal>
 2020-08-12 18:47:19 +08:00
Quan (Andy) Gan ec2e24be6d [Feature] Slice dstnode features in NN modules (#1838) 
* slice dstdata from srcdata within nn module

* a bunch of fixes

* add comment

* fix gcmc layer

* repr for blocks

* fix

* fix context

* fix

* do not copy internal columns

* docstring
 2020-07-25 21:57:49 +08:00
Mufei Li fb9d213848 Fix SAGEConv (#1792) 2020-07-12 13:32:14 +08:00
Quan (Andy) Gan 168a88e570 [Sampling] NodeDataLoader for node classification (#1635) 
* neighbor sampler data loader first commit

* more commit

* nodedataloader

* fix

* update RGCN example

* update OGB

* fixes

* fix minibatch RGCN crashing with self loop

* reverting gatconv test code

* fix

* change to new solution that doesn't require tf dataloader

* fix

* lint

* fix

* fixes

* change doc

* fix docstring

* docstring fixes

* return seeds and input nodes from data loader

* fixes

* fix test

* fix windows build problem

* add pytorch wrapper

* fixes

* add pytorch wrapper

* add unit test

* add -1 support to sample_neighbors & fix docstrings

* docstring fix

* lint

* add minibatch rgcn evaluations

Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Tong He <hetong007@gmail.com>
 2020-07-02 16:31:05 +08:00
Minjie Wang f25bc176d0 [Hetero] Improve speed of several Hetero APIs (#1486) 
* add clone function to frame

* add utest

* replace all local_var with local_scope

* fix utest

* avoid creating canonical types in __getitem__

* lint

* try another utest  appraoch for mx

* utest
 2020-05-01 15:21:33 +08:00
Zihao Ye af61e2fbb4 [Feature] Support nn modules for bipartite graphs. (#1392) 
* init gat

* fix

* gin

* 7 nn modules

* rename & lint

* upd

* upd

* fix lint

* upd test

* upd

* lint

* shape check

* upd

* lint

* address comments

* update tensorflow

Co-authored-by: Quan Gan <coin2028@hotmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2020-03-29 16:48:38 +08:00
Quan (Andy) Gan 4af02022b2 [Bug] Multiple fixes (#1374) 
* multiple fixes

* lint

* lint x2
 2020-03-19 11:19:44 +08:00
Quan (Andy) Gan a9520f71ce [Model][Sampler] GraphSAGE model, bipartite graph conversion & remove edges API (#1297) 
* remove edge and to bipartite and graphsage with sampling

* fixes

* fixes

* fixes

* reenable multigpu training

* fixes

* compatibility in DGLGraph

* rename to compact_as_bipartite

* bugfix

* lint

* add offline inference

* skip GPU tests

* fix

* addresses comments

* fix

* fix

* fix

* more tests

* more docs and unit tests

* workaround for empty slice on empty data
 2020-03-08 02:38:29 +08:00
VoVAllen ddb5d804f9 [Refactor] Break NN modules into files (#859) 
* break nn modules into files

* break mxnet nn modules

* fix lint

* fix lint
 2019-09-16 14:44:15 +08:00