d381f2263d
[Dataset] MovieLens ( #5567 )
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Co-authored-by: Mufei Li <mufeili1996@gmail.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-17-164.ap-northeast-1.compute.internal >
2023-06-19 16:48:27 +08:00
921476c8c6
[Dataset] Add heterophilous graphs. ( #5853 )
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Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2023-06-15 09:14:19 +08:00
a244de579c
[Dataset] WisconsinDataset ( #5520 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2023-04-04 16:44:26 +08:00
dd4c74ff32
[Dataset] CornellDataset and TexasDataset ( #5513 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2023-04-03 16:16:37 +08:00
2b5921e759
[Dataset] Actor ( #5511 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2023-03-31 10:28:50 +08:00
690f37bbe9
update ( #5507 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2023-03-28 19:22:44 +08:00
9e532e7def
[Dataset] Chameleon ( #5477 )
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* update
* update
* update
* lint
* update
* CI
* lint
* update doc
---------
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2023-03-23 22:34:00 +08:00
4534650f5f
[Dataset] Add ZINC Dataset ( #5428 )
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* Update dgl.data.rst
* Add files via upload
* Add files via upload
* Add files via upload
* Update zinc.py
* Update dgl.data.rst
* Update test_data.py
* Add files via upload
* Update cluster.py
* Update pattern.py
* Update zinc.py
* Update zinc.py
* Update test_data.py
* lint
* fix
* fix path
* update test on label shape
---------
Co-authored-by: rudongyu <ru_dongyu@outlook.com >
2023-03-22 18:04:41 +08:00
178290249e
[Dataset] Add PATTERN dataset ( #5422 )
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* add PATTERN dataset
* fix bug
* fix bugs
* fix issues
* refine according to dongyu's comments
---------
Co-authored-by: BuptTab <gyzhou2000@gmail.com >
Co-authored-by: rudongyu <ru_dongyu@outlook.com >
2023-03-08 14:08:12 +08:00
a53ecd229b
[Dataset] Add CLUSTER dataset ( #5389 )
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* add CLUSTER dataset
* refine according to dongyu's comments
---------
Co-authored-by: rudongyu <ru_dongyu@outlook.com >
2023-03-01 16:36:12 +08:00
a208e8868b
[Misc] Black auto fix. ( #4680 )
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* [Misc] Black auto fix.
* fix pylint disable
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2022-10-08 14:15:56 +08:00
defa292bc0
[Dataset] Add Flickr and Yelp dataset ( #4099 )
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* Add Flickr and Yelp dataset
* Update flickr.py
* update
* Update yelp.py
* Update yelp.py
* update
* Update yelp.py
* Update test_data.py
* Update yelp.py
* update
* Update test_data.py
* Update yelp.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-06-14 16:14:12 +08:00
89655cfda2
[Dataset] Add WikiCS Dataset ( #4035 )
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* Fix bugs & Update dataset
* Update
* Update wikics.py
* Update wikics.py
* Update test_data.py
* Update wikics.py
* Update wikics.py
* Update wikics.py
* update
* Update module.py
* Update dgl.data.rst
* Update wikics.py
* Update wikics.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-06-02 23:03:17 +08:00
d9c25521bc
[Data] AsGraphPredDataset ( #4073 )
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* Update
* CI
* Update
* Update
* Fix
* Fix
2022-06-02 16:18:48 +08:00
65b0b9e8c3
[Dataset & Transform] Synthetic Datasets for Explainability and SIGNDiffusion Transform ( #3982 )
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* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Fix
* Update
* Update
* Update
2022-05-16 22:32:09 +08:00
39121dfdb8
[Feature] support non-numeric node_id/src_id/dst_id/graph_id and rena… ( #3740 )
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* [Feature] support non-numeric node_id/src_id/dst_id/graph_id and rename CSVDataset
* change return value when iterate dataset
* refine data_parser
* force reload
2022-02-17 08:35:39 +08:00
dc78e11c3f
[Dataset] Adapter to convert a dataset for link prediction task ( #3699 )
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* add ut
* add doc link
* install dep
* add
* Revert "install dep"
This reverts commit e574a8377144749056c6849b655004df2771e179.
* add
* merge fix
* rm files
* fix
* fix
* fix
* fix
* fix typo
* fix tf
* fix
* fix
* fix
* fix
* fix
* fix dependency
* fix test
* fix
* fix
* add doc
* fix
* fix
* fix test
* fix test
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2022-02-11 16:59:14 +08:00
5152a87982
[Data] Utility function and class for converting a dataset for node prediction ( #3695 )
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* add ut
* add doc link
* install dep
* fix ci
* fix ut; more comments
* remove deprecated attributes in rdf datasets; fix label feature name
* address comments
* fix ut for other frameworks
2022-01-30 14:31:37 +08:00
9ec9df57ca
[Fix] check and load dependencies when needed ( #3655 )
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* [Fix] check and load dependencies when needed
* refine rdflib import
2022-01-18 16:10:47 +08:00
41124b3284
[Fix] Do not import DGLCSVDataset in default in case of dependency issue ( #3642 )
2022-01-11 15:25:03 +08:00
95c0ff6302
[Feature] add CSVDataset to load data from csv files ( #3547 )
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* [Feature] add CSVDataset to load data from csv files
* add CSVDataset class file
* install pyyaml when running unit tests
* install pandas for unit tests
* utilize pydantic for YAML config check
* generate yaml and csv files during test
* make more keys as optional
* remove/rename several keys in yaml config and more tets though looks a bit clumsy
* fix test failure on mxnet
* pass /path/to/dataset instead of yaml path
* code refinement
* code refine
* change several yaml field such as feat and graph_id
* merge graph generation logic
* refine code
* Refactored_first_version
* DGLCSVDataset works for single heterograph
* add more tests
* fix test failure in mxnet
* add docstring
* use list comprehension for dict
* fix version in YAML
* refine data length assert
* use dict.pop directly
* remove ambiguous variable names
* refine graph id missing logic
* refine graph create call
* separate node/edge/graph data parser
* remove separator in DefaultDataParser
* refine validation error log for yaml field
* minor check
* refine code via dict.get()
* move load_from_csv into Node/Edge/GraphData
* move _parse_node/edge/graph_data into Node/Edge/GraphData
* refine id-related fields check
* check duplicate ntypes/etypes when load yaml
* refine docstring
2022-01-10 17:21:57 +08:00
066bef21f0
[Doc] Fix CoraFull number of edges inconsistency in doc ( #3139 )
2021-07-14 15:06:57 +08:00
9706eaa895
[Feature] add permission information and fix import problems ( #3036 )
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* [Feature] add positive negative statistics
* [Feature] add permission information and fix import problem
* fix backend incompatible problem
* modify random split to remove sklearn usage
* modify file read to remove pandas usage
* add datasets into doc
* add random seed in data splitting
* add dataset unit test
* usage permission information update
Co-authored-by: zhjwy9343 <6593865@qq.com >
2021-06-21 11:55:15 +08:00
55e7796ac5
Revert "[Feature] add permission information and fix import problems ( #2998 )" ( #3029 )
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This reverts commit cba5b188b5VoVAllen@users.noreply.github.com >
2021-06-17 13:58:38 +08:00
cba5b188b5
[Feature] add permission information and fix import problems ( #2998 )
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* [Feature] add positive negative statistics
* [Feature] add permission information and fix import problem
* fix backend incompatible problem
* modify random split to remove sklearn usage
* modify file read to remove pandas usage
* add datasets into doc
Co-authored-by: zhjwy9343 <6593865@qq.com >
2021-06-16 18:24:17 +08:00
a1f59c3b68
[Feature] QM9Edge Dataset Support ( #2704 )
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* [Feature] Support QM9Edge Datset
* Update qm9_edge.py
* disable tqdm
* Update qm9_edge.py
* Update qm9_edge.py
* Update qm9_edge.py
* Update qm9_edge.py
* Update qm9_edge.py
* Update qm9_edge.py
* Update qm9_edge.py
* remove preprocessing part
* add comparisons in qm9.py
* [docs] add qm9edge dataset
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2021-03-09 14:51:21 +08:00
2c6d071617
[Feature] QM9 Dataset Support ( #2521 )
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* [Model] MixHop for Node Classification task
* [docs] update
* [docs] update
* [fix] remove seed option
* [fix] update readme
* [feature] support qm9 dataset
* [style] update
* [docs] fix the details
* [fix] indexing only support int
* [style] update
* [fix] multiple backends support
* [docs] add qm9
* [fix] Z type: float32 -> int32
* [fix] Z type: int32 -> long
* [docs] add ref
* [docs] fix
* [docs] update
* [docs] update
* [fix] test eval
* [docs] fix example
Co-authored-by: xnuohz@126.com <ubuntu@ip-172-31-44-184.us-east-2.compute.internal >
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-01-21 01:33:30 +08:00
f13b9b6212
[Doc] Scan the API docs and make many changes ( #2080 )
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* WIP: api
* dgl.sampling, dgl.data
* dgl.sampling; dgl.dataloading
* sampling packages
* convert
* subgraph
* deprecate
* subgraph APIs
* All docstrings for convert/subgraph/transform
* almost all funcs under dgl namespace
* WIP: DGLGraph
* done graph query
* message passing functions
* lint
* fix merge error
* fix test
* lint
* fix
Co-authored-by: Quan Gan <coin2028@hotmail.com >
2020-08-20 23:26:49 +08:00
967ecb8064
[Dataset] Fix the docstring format for dgl.data section ( #1941 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* update data rst
* update data doc and docstring
* API doc rst for dataset
* docstring
* update api doc
* add url format
* update docstring
* update citation graph
* update knowledge graph
* update gc datasets
* fix index
* Rst fix (#3 )
* Fix syntax
* syntax
* update docstring
* update doc (#4 )
* final update
* fix rdflib
* fix rdf
Co-authored-by: HuXiangkun <huxk_hit@qq.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-08-06 14:47:49 +08:00
451ed6d836
[Dataset] SBMMixtureDataset ( #1920 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* SBMMixture dataset
* Update sbm.py
* fix example
* Update sbm.py
* Revert "Update sbm.py"
This reverts commit 066db5c89bd5e159981ae7cad1bfb883ea5db71d.
* Update sbm.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-08-04 15:06:53 +08:00
37aa99c510
[Dataset] GNNBenchmarkDataset ( #1912 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* gnn benchmark dataset
* Update gnn_benckmark.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-08-03 23:28:58 +08:00
001d793711
[Dataset] SSTDataset ( #1918 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* SSTDataset
* Update tree.py
2020-08-03 19:15:28 +08:00
73b9c6f18c
[Dataset] GDELTDataset ( #1911 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* gdelt dataset
* Update gdelt.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-08-03 17:43:50 +08:00
06ea03d0f8
[Dataset] ICEWS18Dataset ( #1913 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* ICEWS18Dataset
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-08-03 17:07:02 +08:00
22485e58d3
[Dataset] BitcoinOTCDataset ( #1910 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* bitcoinotc dataset
* Update bitcoinotc.py
2020-08-03 12:15:04 +08:00
d22f96feb4
[Dataset] QM7bDataset ( #1915 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* QM7bDataset
* Update qm7b.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-08-03 11:58:31 +08:00
743c38401c
[Dataset] KarateClubDataset ( #1897 )
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* karateclub dataset
* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* Update karate.py
* doc string
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-08-02 22:39:11 +08:00
b347590a37
[Dataset] Citation graph ( #1902 )
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* citation graph
* GCN example use new citatoin dataset
* mxnet gat
* triger
* Fix
* Fix gat
* fix
* Fix tensorflow dgi
* Fix appnp, graphsage for mxnet
* fix monet and sgc for mxnet
* Fix tagcn
* update sgc, appnp
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
2020-08-01 19:25:50 +08:00
90d2118da5
[Dataset] Change Cora Split ( #1583 )
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* Use new version of Cora
* Fix import
2020-06-03 15:45:38 +08:00
9c790b1143
[Dataset] Add CoraFull, Amazon, KarateClub, Coauthor Dataset ( #855 )
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* convert np.ndarray to backend tensor
* add datasets
* add qm7
* add dataset
* add dataset
* fix
* change ppi
* tu dataset
* add datasets
* fix
* fix
* fix
* fix
* add docstring
* docs
* doc
2019-10-01 01:19:59 +08:00
e590feeb62
[Model Zoo] GAT on Tox21 ( #793 )
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* GAT
* Fix mistake
* Fix
* hotfix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Update
* Update
* Fix style
* Hotfix
* Hotfix
* Hotfix
* Fix
* Fix
* Update
* CI trial
* Update
* Update
* Update
2019-08-28 04:47:16 +08:00
3bc73931f8
[Model Zoo] Molecule Regression ( #779 )
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* [Model] MPNN
* [Model] MPNN 🔨 reorganize the mpnn/sch/mgcn model & alchemy dataset
* [Model] MPNN alchemy dataloader refactoring
* [Model] Chem model zoo minor change
* [Model] Chem Model Zoo 🔥 remove old samples
* [Model Zoo] molecule regression minor change
* Fix dataset import
* Fix dataset import
* [Model Zoo] molecule regression test set
* [Model Zoo] molecule prediction MPNN model hyperparameter tuning
* [Model Zoo] molecule prediction ✏️ mpnn performance update
2019-08-26 17:42:33 +08:00
2ee3c78c7c
[Dataset] Tox21 ( #760 )
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* tox21
* fix ci
* fix ci
* fix urls to url
* add doc
* remove binary
2019-08-14 16:55:01 +08:00
8c79885d8b
[BUGFIX] fix the error message in the data loader. ( #509 )
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* fix.
* Change to required=True
* Update description
* Change back
2019-04-26 09:52:45 +09:00
a3febc061b
[Model] Add GIN Model ( #471 )
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* add gin model
* convert dataset.py to data_ont_the_fly way and put it into dgl.data module
* convert dataset.py to data_ont_the_fly way and put it into dgl.data module
python code checked
* modified document and reference TUDataset; checked python part and bypass cpp part due to error
* change tensor to numpy in dataset and transform in collate@Dataloader
* Change minor format issue
Change minor format issue
* moved logging; adjusted tqdm etc
2019-04-17 14:57:07 +08:00
00fc680aae
[Dataset] Add TUDataset ( #473 )
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* add graph classification dataset
* add node label
* add TUDataset
* Modify to consistent with Qi Huang's implementation
* add docs
* Add docs
* Fix change of environment variable
* Update tu.py
* Update tu.py
* Fix error when add node with np.int64
2019-04-10 09:37:53 -04:00
788d8dd4ad
[Model]PPI dataloader and inductive learning script. ( #395 )
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* Create ppi.py
* Create train_ppi.py
* Update train_ppi.py
* Update train_ppi.py
* Create gat.py
* Update train.py
* Update train_ppi.py
* Update ppi.py
* Update train_ppi.py
* Update ppi.py
* Update train_ppi.py
* Update train_ppi.py
* Update ppi.py
* Update train_ppi.py
* update docs and readme
2019-02-17 16:41:30 -05:00
51293a3273
[Data] reddit data loader ( #372 )
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* reddit data loader
* upload to S3
* update
* add self loop
* address comments
* fi
2019-02-08 10:53:39 -08:00
abf12fc757
[Data] Synthetic dataset for graph classificaiton ( #364 )
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* minigc dataset
* more comments
* sphinx
2019-01-25 10:47:47 -05:00
b1e8d95e99
[Doc] LGNN tutorial ( #210 )
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* tutorial notebook added
* lg tutorial cleaned up
* dataset scaffold
* move dataloader to data
* fix model
* remove todo
* utils seperated
* [model]line graph new implementation + tutorial + binary sub graph dataset
* [tutorial] line graph sphinx scaffold
* [tutorial] lgnn tutorial improved
* [tutorial] remove notebook
* [tutorial] fix lg and gcn links
* [tutorial] fix random seed
* [tutorial]fix
* WIP
* code refactor done
* new mini dataset; remove utils code
* fix
* word fix
* fix link
* minor fix
* minor fix
* minor fix
2018-12-03 17:59:50 -05:00
Jiahang Li