d0638b1ea9
[Example] Update the example of distributed GNN training of RGCN ( #2709 )
...
* support gpu training.
* remove unnecessary arguments.
* update README.
* update time measurement.
* add zero_grad.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-03-01 12:00:15 -08:00
28b0a76618
[Example] Provide instructions of setting up passwordless SSH login. ( #2707 )
2021-02-27 18:34:46 -08:00
6568d0aaf6
[Example] Recommend NFS over copy files ( #2689 )
...
* Update README to use NFS, rather than copying files
* Update README.md
* Update README.md
* Update README.md
* Add ParMetis
* Update README.md
* fix directory.
* fix
* redo.
* fix.
* update.
* add more descriptions
Co-authored-by: Da Zheng <zhengda1936@gmail.com >
Co-authored-by: Quan Gan <coin2028@hotmail.com >
2021-02-25 20:20:52 +08:00
491d908b55
[Example] Add ARMA for Node Classification ( #2694 )
...
* [example] arma
* update
* update
* update
* update
* update
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2021-02-25 17:38:43 +08:00
583aa76621
[Example] Pytorch Seal example ( #2638 )
...
* add seal example
* 1. add paper infomation in examples/README
2. adjust codes
3. option test
* use latest `to_simple` to replace coalesce graph function
* remove outdated codes
* remove useless comment
2021-02-25 15:53:35 +08:00
0526b885ee
[Distributed] Fix the path for distributed partitioning. ( #2700 )
...
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal >
2021-02-24 20:41:41 -08:00
ff64bd0de8
add warning for a bug in README ( #2665 )
2021-02-16 00:16:40 -08:00
e46983f662
[Bug Fix][Example] fix dataloader bug in gxn ( #2631 )
...
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-02-10 11:21:34 +08:00
e4ff484494
[Distributed] Distributed METIS partition ( #2576 )
...
* add convert.
* fix.
* add write_mag.
* fix convert_partition.py
* write data.
* use pyarrow to read.
* update write_mag.py
* fix convert_partition.py.
* load node/edge features when necessary.
* reshuffle nodes.
* write mag correctly.
* fix a bug: inner nodes in a partition might be empty.
* fix bugs.
* add verify code.
* insert reverse edges.
* fix a bug.
* add get node/edge data.
* add instructions.
* remove unnecessary argument.
* update distributed preprocessing.
* fix readme.
* fix.
* fix.
* fix.
* fix readme.
* fix doc.
* fix.
* update readme
* update doc.
* update readme.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-202.us-west-1.compute.internal >
2021-02-08 17:19:18 -08:00
48d357b8f6
Fix numbers ( #2641 )
...
Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal >
2021-02-08 14:05:30 +08:00
ae18d7f04e
[Example]Add dependencies for GNN-Film and dagnn ( #2633 )
...
* add dependencies for GNN-Film and dagnn
* fix
* fix
* fix
2021-02-08 10:42:32 +08:00
3cf42fd199
[Bug Fix][Example] hgp-sl: More info for running ( #2634 )
...
* [Bug Fix][Example] hgp-sl: More info for running
* change list to table
* change dataset summary in gxn and sagpool
* remove redundent
Co-authored-by: Tong He <hetong007@gmail.com >
2021-02-05 18:26:33 +08:00
3ca52b1e59
[Fix] Various Fix after Bug Bash ( #2620 )
...
* update
* Misc fix
* Update
2021-02-05 17:34:16 +08:00
f8c9d58aed
[Bug] Hardgat enable gpu training ( #2632 )
...
* add multihead in DotGatConv
* Fix spacing issue
* Add Unit test for dotgat
* Modified Unit test for dotgat
* Add transformer like divisor
* Update dotgatconv.py
* Update hgao.py
* Update train.py
Co-authored-by: Chen <chesirui@3c22fbe5458c.ant.amazon.com >
Co-authored-by: Zihao Ye <expye@outlook.com >
2021-02-05 16:52:41 +08:00
23afe911b2
[Bug Fix] Fix several sparse optimizer bugs ( #2596 )
...
* Fix pytorch TCP kvstore bug
* lint
* Fix
* upd
* Fix lint
* Fix
* trigger
* fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal >
2021-02-05 11:49:41 +08:00
2f71bc507a
[Example] Neural Graph Collaborative Filtering (NGCF). ( #2612 )
...
* ngcf
* ngcf
* update
* ngcf
* ngcf
* remove data
* update
* data
Co-authored-by: zhjwy9343 <6593865@qq.com >
Co-authored-by: Zihao Ye <expye@outlook.com >
2021-02-05 00:32:21 +08:00
94ab9709a7
[Bugfix] fix a typo in consis_loss function ( #2616 )
2021-02-04 11:59:41 +08:00
ff345c2e22
[Example] update PointNet and PointNet++ examples for Part Segmentation ( #2547 )
...
* [Model] update PointNet example for Part Segmentation
* Fixed issues with pointnet examples
* update the README
* Added image
* Fixed README and tensorboard arguments
* clean
* Add timing
* Update README.md
* Update README.md
Fixed a typo
Co-authored-by: Tong He <hetong007@gmail.com >
2021-02-03 22:15:46 +08:00
b1840f49fa
[Dataset] Change the Data Type of the Node Features in GINDataset/TUDataset from Float64 to Float32 ( #2592 )
...
* Update
* Update
* Update
* update
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Tong He <hetong007@gmail.com >
2021-02-03 21:00:45 +08:00
b04cf65b2b
[Bugfix] Fix sparseadam bug in metapath2vec(pytorch) ( #2607 )
...
It seems that there is a bug in Sparseadam in PyTorch, and it can be temporarily fixed by:
optimizer = optim.SparseAdam(list(self.skip_gram_model.parameters()), lr=self.initial_lr)
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-02-03 17:27:20 +08:00
a7e941c379
[Feature] Add support for sparse embedding ( #2451 )
...
* Add sparse embedding for dgl and update rgcn example
* upd
* Fix
* Revert "Fix"
This reverts commit 4da87cdfb8b8c3506b7fc7376cd2385ba8045c2a.
* Fix
* upd
* upd
* Fix
* Add unitest and update impl
* fix
* Clean up rgcn example code
* upd
* upd
* update
* Fix
* update score
* sparse for sage
* remove model sparse
* upd
* upd
* remove global norm
* revert delete model_sparse.py
* update according to comments
* Fix doc
* upd
* Fix test
* upd
* lint
* lint
* lint
* upd
* upd
* clean up
Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal >
2021-01-28 00:26:49 +08:00
8e981db960
[Example] Add Graph Cross Net (GXN) example for pytorch backend ( #2559 )
...
* add sagpool example for pytorch backend
* polish sagpool example for pytorch backend
* [Example] SAGPool: use std variance
* [Example] SAGPool: change to std
* add sagpool example to index page
* add graph property prediction tag to sagpool
* [Example] add graph classification example HGP-SL
* [Example] fix sagpool
* fix bug
* [Example] change tab to space in README of hgp-sl
* remove redundant files
* remote redundant network
* [Example]: change link from code to doc in HGP-SL
* [Example] in HGP-SL, change to meaningful name
* [Example] Fix path mistake for 'hardgat'
* [Bug Fix] Fix undefined var bug in LegacyTUDataset
* upt
* [Bug Fix] Fix cache file name bug in TUDataset
* [Example] Add GXN example for pytorch backend
* modify readme
* add more exp result
Co-authored-by: zhangtianqi <tianqizh@amazon.com >
Co-authored-by: Tong He <hetong007@gmail.com >
2021-01-27 18:14:27 +08:00
8900450d9e
[Example] DAGNN ( #2545 )
...
* dagnn
* dagnn
* Update README.md
* Update README.md
* fixed some details
* fixed some details
* Update README.md
* Update README.md
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2021-01-26 17:06:32 +08:00
6c23fba8fa
[Doc][Org] move edge_softmax to functional ( #2442 )
...
* move edge_softmax to functional
* change examples
* fixes
* revert
* fix
* fix
* remove
* fix
* test
* add init
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-01-26 12:46:37 +08:00
25ac334403
[Distributed] Heterogeneous graph support ( #2457 )
...
* Distributed heterograph (#3 )
* heterogeneous graph partition.
* fix graph partition book for heterograph.
* load heterograph partitions.
* update DistGraphServer to support heterograph.
* make DistGraph runnable for heterograph.
* partition a graph and store parts with homogeneous graph structure.
* update DistGraph server&client to use homogeneous graph.
* shuffle node Ids based on node types.
* load mag in heterograph.
* fix per-node-type mapping.
* balance node types.
* fix for homogeneous graph
* store etype for now.
* fix data name.
* fix a bug in example.
* add profiler in rgcn.
* heterogeneous RGCN.
* map homogeneous node ids to hetero node ids.
* fix graph partition book.
* fix DistGraph.
* shuffle eids.
* verify eids and their mappings when loading a partition.
* Id map from homogneous Ids to per-type Ids.
* verify partitioned results.
* add test for distributed sampler.
* add mapping from per-type Ids to homogeneous Ids.
* update example.
* fix DistGraph.
* Revert "add profiler in rgcn."
This reverts commit 36daaed8b660933dac8f61a39faec3da2467d676.
* add tests for homogeneous graphs.
* fix a bug.
* fix test.
* fix for one partition.
* fix for standalone training and evaluation.
* small fix.
* fix two bugs.
* initialize projection matrix.
* small fix on RGCN.
* Fix rgcn performance (#17 )
Co-authored-by: Ubuntu <ubuntu@ip-172-31-62-171.ec2.internal >
* fix lint.
* fix lint.
* fix lint.
* fix lint.
* fix lint.
* fix lint.
* fix.
* fix test.
* fix lint.
* test partitions.
* remove redundant test for partitioning.
* remove commented code.
* fix partition.
* fix tests.
* fix RGCN.
* fix test.
* fix test.
* fix test.
* fix.
* fix a bug.
* update dmlc-core.
* fix.
* fix rgcn.
* update readme.
* add comments.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-202.us-west-1.compute.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-62-171.ec2.internal >
* fix.
* fix.
* add div_int.
* fix.
* fix.
* fix lint.
* fix.
* fix.
* fix.
* adjust.
* move code.
* handle heterograph.
* return pytorch tensor in GPB.
* remove some tests in example.
* add to_block for distributed training.
* use distributed to_block.
* remove unnecessary function in DistGraph.
* remove distributed to_block.
* use pytorch tensor.
* fix a bug in ntypes and etypes.
* enable norm.
* make the data loader compatible with the old format.
* fix.
* add comments.
* fix a bug.
* add test for heterograph.
* support partition without reshuffle.
* add test.
* support partition without reshuffle.
* fix.
* add test.
* fix bugs.
* fix lint.
* fix dataset.
* fix for mxnet.
* update docstring.
* rename to floor_div
* avoid exposing NodePartitionPolicy and EdgePartitionPolicy.
* fix docstring.
* fix error.
* fixes.
* fix comments.
* rename.
* rename.
* explain IdMap.
* fix docstring.
* fix docstring.
* update docstring.
* remove the code of returning heterograph.
* remove argument.
* fix example.
* make GraphPartitionBook an abstract class.
* fix.
* fix.
* fix a bug.
* fix a bug in example
* fix a bug
* reverse heterograph sampling.
* temp fix.
* fix lint.
* Revert "temp fix."
This reverts commit c450717b9f578b8c48769c675f2a19d6c1e64381.
* compute norm.
* Revert "reverse heterograph sampling."
This reverts commit bd6deb7f52998de76508f800441ff518e2fadcb9.
* fix.
* move id_map.py
* remove check
* add more comments.
* update docstring.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-202.us-west-1.compute.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-62-171.ec2.internal >
2021-01-24 19:18:00 -08:00
2c6d071617
[Feature] QM9 Dataset Support ( #2521 )
...
* [Model] MixHop for Node Classification task
* [docs] update
* [docs] update
* [fix] remove seed option
* [fix] update readme
* [feature] support qm9 dataset
* [style] update
* [docs] fix the details
* [fix] indexing only support int
* [style] update
* [fix] multiple backends support
* [docs] add qm9
* [fix] Z type: float32 -> int32
* [fix] Z type: int32 -> long
* [docs] add ref
* [docs] fix
* [docs] update
* [docs] update
* [fix] test eval
* [docs] fix example
Co-authored-by: xnuohz@126.com <ubuntu@ip-172-31-44-184.us-east-2.compute.internal >
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-01-21 01:33:30 +08:00
b36b6c268e
[Example] Add HGP-SL example for pytorch backend ( #2515 )
...
* add sagpool example for pytorch backend
* polish sagpool example for pytorch backend
* [Example] SAGPool: use std variance
* [Example] SAGPool: change to std
* add sagpool example to index page
* add graph property prediction tag to sagpool
* [Example] add graph classification example HGP-SL
* [Example] fix sagpool
* fix bug
* [Example] change tab to space in README of hgp-sl
* remove redundant files
* remote redundant network
* [Example]: change link from code to doc in HGP-SL
* [Example] in HGP-SL, change to meaningful name
* [Example] Fix path mistake for 'hardgat'
Co-authored-by: zhangtianqi <tianqizh@amazon.com >
2021-01-18 17:01:52 +08:00
673cc64c8c
[Example] Add hardGAT example ( #2486 )
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* Add hgat example
* Add experiment
* Clean code
* clear the code
* Add index in README
* Add index in README
* Add index in README
* Add index in README
* Add index in README
* Add index in README
* Change the code title and folder name
* Ready to merge
* Prepare for rebase and change message passing function
* use git ignore to handle empty file
* change file permission to resolve empty file
* Change permission
* change file mode
Co-authored-by: Chen <chesirui@3c22fbe5458c.ant.amazon.com >
Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com >
2021-01-15 16:58:19 +08:00
a9e16c177c
[Example] GNN-FiLM ( #2476 )
...
* gnnfilm
* update
* readme
Co-authored-by: zhjwy9343 <6593865@qq.com >
2021-01-13 22:34:14 +08:00
80fdcfdf83
[Example] Graph Random Neural Network ( #2502 )
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* Add Implementation of GRAND
* Performance updated
* Update README.md
add indexing entries
* add indexing entries for grand
* change grand from 2021 to 2020
* [Example] fix some bugs
* [Examples] fix bug
Co-authored-by: 张恒瑞 <hengrui@macbook.local >
Co-authored-by: 张恒瑞 <hengrui@192.168.124.35 >
Co-authored-by: zhjwy9343 <6593865@qq.com >
2021-01-13 14:06:47 +08:00
1502c56d51
[Doc] Fix typo of datasets ( #2517 )
...
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-01-13 12:34:47 +08:00
71283997ce
Integrate Regression Test with Jenkins ( #2448 )
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* add bench jenkins
* instance type
* fix
* fix
* fix
* 111
* test
* 111
* 111
* fix
* test
* run
* fix
* fix
* fix
* fix
* fix
* publish results
* 111
* regression
* launch ec2 script
* fix
* add
* run on master
* change
* rrr
* run gpu
* fix
* fix
* try fix
* fix
* ff
* fix
* fix
* fix
* refactor
* fix
* fix
* update
* fix
* fix
* fix
* fix
* remove import torchtext
* add shm size
* update
* fix
* fix
* fix
* fix
* fix this!!!!
* 111
* fix
* remove verbose
* fix
* fix
* fix
* fix
* fix
* fix
* fix
* fix
* update readme
* fix
* fix
* fix
* change asv default to head
* commit sage and rgcn
* fix
* update
2021-01-11 16:01:51 +08:00
a9f8f2589c
[Doc] Update GraphDataLoader in our docs ( #2504 )
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* update graphdataloader in docs
* fix
* update examples
* fix sagpool
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2021-01-11 13:11:19 +08:00
400687d7a8
add venue label filename; delete redundant code ( #2491 )
...
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2021-01-08 17:05:33 +08:00
79940695de
[Examples][Bug] fix a silly typo in JTNN ( #2505 )
2021-01-07 20:14:45 +08:00
a8ce095724
update the code of examples/pytorch/metapath2vec.py ( #2463 )
...
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2021-01-02 01:02:01 +08:00
927d2b319b
[Example] Move Data to GPU before Minibatch Training ( #2453 )
...
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
2020-12-28 21:26:32 +08:00
72ef642f29
[Example] Add sagpool example for pytorch backend ( #2429 )
...
* add sagpool example for pytorch backend
* polish sagpool example for pytorch backend
* [Example] SAGPool: use std variance
* [Example] SAGPool: change to std
* add sagpool example to index page
* add graph property prediction tag to sagpool
Co-authored-by: zhangtianqi <tianqizh@amazon.com >
2020-12-28 17:44:55 +08:00
0018e90c5a
[Doc] Implementation Index Page ( #2443 )
...
* Update
* Update
* Update
* Update README.md
* Update README.md
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
2020-12-26 14:37:04 +08:00
492ad9be81
[Fix] Avoid Overloading Nonzero for PyTorch Backend ( #2434 )
...
* Update gatedgraphconv.py
* Update entity_classify.py
* Update data-process.rst
* Update reading_data.py
* Update data-process.rst
* Update utils.py
* Update knowledge_graph.py
* Update entity_classify.py
* Update rdf.py
* Update entity_classify_mb.py
* Update test_classify.py
* Update tensor.py
* Update sparse.py
* Update entity_classify_mp.py
* Update 6_line_graph.py
2020-12-20 13:12:17 +08:00
5c77b61184
[Model] MixHop for Node Classification task ( #2426 )
...
* [Model] MixHop for Node Classification task
* [docs] update
* [docs] update
* [fix] remove seed option
* [fix] update readme
Co-authored-by: xnuohz@126.com <ubuntu@ip-172-31-44-184.us-east-2.compute.internal >
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2020-12-18 19:28:46 +08:00
0ceb6751a0
Correct error when using enisum ( #2417 )
...
* correct error when using enisum
* Correct error when using enisum
Co-authored-by: Zihao Ye <expye@outlook.com >
2020-12-13 01:00:03 +08:00
ee8a0e6628
correct error when using enisum ( #2406 )
...
Co-authored-by: Zihao Ye <expye@outlook.com >
2020-12-08 23:16:10 +08:00
6c0cc1fb76
modify code with buildin function ( #2394 )
...
* modify code with buildin function
* use enisum
Co-authored-by: Zihao Ye <expye@outlook.com >
2020-12-08 12:46:09 +08:00
62b4bbb494
[Fix] Enable mini-batch rgcn for CPU ( #2345 )
2020-11-16 17:27:54 +08:00
cb2bc69b55
Fix a bug in the data loading of GraphWriter ( #2343 )
...
In the bucket sampler, the length array should be recovered after random picking samples.
2020-11-13 22:33:12 +08:00
88a042d34a
fix reddit self loop ( #2330 )
2020-11-09 14:40:21 +08:00
b8cc26e34a
[Model] SIGN for OGB dataset ( #2316 )
...
* sign for ogbn products, arxiv, mag
* texts
* fix
* update ogb folder readme
* use dgl nightly build
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2020-11-03 10:28:31 +08:00
269983dbcd
[Fix] typo ( #2265 )
...
* upd
* upd
* upd
* upd
* upd
* fix OpenMP compatibility issues
* typo
* partition
* misc
* fix typo
* num_parts=1
* import torch
* long
* print info
* print info
* print info
* upd
* remove debug code
* revert partition.py
* fix cut count
* fix cut count
* Revert "fix cut count"
This reverts commit 10926b4fd48f45c8f1ddb58be7db6c22e653effd.
* Revert "fix cut count"
This reverts commit 76465283bef093a2b4209ad70dd15d2437b2ec8a.
* type of deprecate
* typo in deprecate info
* fix typo
* use cv for partitioning
* CE
* no message
* revert
* typo
* no message
* no message
* no message
* practice
* dmlc-core
* DGLGraph
Co-authored-by: yzh119 <expye@outlook.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2020-10-29 23:05:36 +08:00
d06c540336
[Example] fix print info ( #2305 )
2020-10-29 09:20:27 +08:00
Da Zheng