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Minjie Wang 0868f1796d [Doc] sparse lib tutorial and colab links (#5181) 
* Created using Colaboratory

* nbsphinx & nblink

* Created using Colaboratory

* update notebook

* minor update
 2023-01-16 18:59:19 +08:00
peizhou001 56ffb650fe [API Deprecation]Deprecate contrib module (#5114) 2023-01-06 20:16:01 +08:00
Mufei Li 73b9f3a1da [Sparse] Migrate DiagMatrix class (#4567) 
* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal>
 2022-09-20 17:17:43 +08:00
Mufei Li 3bd5a9b6d1 [Doc] Fix Doc (#3777) 
* Update

* Update

* Update

* Update
 2022-02-25 17:21:06 +08:00
Mufei Li 6d9433b04f [Transform] [Doc] Rename transform to transforms and update doc (#3765) 
* Update

* Update

* Update

* Fix

* Update

* Update

* Update

* Fix
 2022-02-24 21:28:15 +08:00
Rhett Ying d8dd2bb542 [DOC] list transform in api reference (#3731) 
* [DOC] list transform in api reference

* refine
 2022-02-14 18:25:58 +08:00
Muhyun Kim 67f93144ed user guide korean version (#3559) 
Co-authored-by: zhjwy9343 <6593865@qq.com>
 2021-12-03 00:09:47 +08:00
mszarma a47ab71d44 [DOCS] Add training on CPU sections to docs (#3398) 2021-10-14 14:53:16 +08:00
David Min b78acd67ce [Doc] Add an official documentation of UnifiedTensor (#3194) 
* Add pytorch-direct version

* remove

* add documentation for UnifiedTensor

* Revert "add documentation for UnifiedTensor"

This reverts commit 63ba42644d4aba197c1cb4ea4b85fa1bc43b8849.

* add UnifiedTensor documentation

* Update python/dgl/contrib/unified_tensor.py

Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

Co-authored-by: shhssdm <shhssdm@gmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
 2021-08-02 22:40:51 +08:00
Minjie Wang d1cc096956 [Doc] Note for performance benchmarks (#3152) 
Co-authored-by: Tong He <hetong007@gmail.com>
 2021-07-20 13:33:32 +08:00
Tong He 972a9f1323 [Doc] Re-organize the code for dgl.geometry, and expose it in the doc (#2982) 
* reorg and expose dgl.geometry

* fix lint

* fix test

* fix
 2021-06-07 11:19:39 +08:00
Da Zheng b1628f2398 [Tutorial] Distributed node classification. (#2969) 
* add init version.

* fix build.

* fix format.

* fix.

* fix.

* fix format.

* update README.

* avoid running CI on distributed training tutorials.

* Update tutorials/dist/1_node_classification.py

Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* fix.

Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
 2021-06-04 21:50:16 +08:00
Mufei Li 09642d7c21 [Tutorial] Single Machine Multi-GPU Minibatch Graph Classification (#2940) 
* Update

* Update

* Update tutorials/multi/1_graph_classification.py

Co-authored-by: Tong He <hetong007@gmail.com>

* Update

* Update

* Update

Co-authored-by: Ubuntu <ubuntu@ip-172-31-4-21.us-west-2.compute.internal>
Co-authored-by: Tong He <hetong007@gmail.com>
 2021-05-31 18:36:34 +08:00
Quan (Andy) Gan caa6d6072c [Feature] Replacing thread_wrapped_func with minimal mp.Process wrapper (#2905) 
* standardizing thread_wrapped_func

* lints

* Update __init__.py
 2021-05-14 11:34:49 +08:00
Minjie Wang 8a07ab7737 [Doc] Tutorials re-organization (#2683) 
* reorg

* change titles

* rm some stale API doc; minor fix

* fix docs

* add warning

* rm new-tutorial run in ci

* lint
 2021-02-20 17:42:45 +08:00
xiang song(charlie.song) 453d358d2c [Doc] Fix docs for sparse optimizer (#2680) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2021-02-19 14:07:35 +08:00
Quan (Andy) Gan 9e04a52abd [Doc] Reorganize tutorial (#2678) 2021-02-19 13:49:13 +08:00
Quan (Andy) Gan 98ac391ed9 [Doc] Large graph training tutorials (#2595) 
* large graph training tutorials

* add full graph link prediction update

* fix

* fix

* fix

* addressed comments
 2021-02-07 17:55:49 +08:00
Zihao Ye 7bab1365e2 [feature] Supporting half precision floating data type (fp16). (#2552) 
* add tvm as submodule

* compilation is ok but calling fails

* can call now

* pack multiple modules, change names

* upd

* upd

* upd

* fix cmake

* upd

* upd

* upd

* upd

* fix

* relative path

* upd

* upd

* upd

* singleton

* upd

* trigger

* fix

* upd

* count reducible

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* only keep related files

* upd

* upd

* upd

* upd

* lint

* lint

* lint

* lint

* pylint

* upd

* upd

* compilation

* fix

* upd

* upd

* upd

* upd

* upd

* upd

* upd doc

* refactor

* fix

* upd number

Co-authored-by: Zhi Lin <linzhilynn@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-42-78.us-east-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-21-156.us-east-2.compute.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2021-01-28 11:21:58 +08:00
Quan (Andy) Gan e018939729 [Tutorial] New tutorials for small graphs (#2482) 
* new tutorials for small graphs

* address changes and use GraphDataLoader

* fix and add data

* fix load_data

* style fixes

* Update 5_graph_classification.py
 2021-01-10 22:24:21 +08:00
zhjwy9343 dc072dca7d [Doc] Add User Guide CN index page (#2413) 
* [Doc] Add CN index page

* [Doc] Test table in contributor list

* [Doc] Test table in contributor list

* [Doc] Add table contents in contributor list

* [Doc] Add table contents in contributor list

* [Doc] Edit table contents in contributor list

* [Doc] Edit table contents in contributor list

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2020-12-10 12:39:54 +08:00
Minjie Wang bcff14ccde [Dco] Remove preface in guide (#2096) 
* fix

* fix
 2020-08-23 10:27:15 +08:00
Minjie Wang f13b9b6212 [Doc] Scan the API docs and make many changes (#2080) 
* WIP: api

* dgl.sampling, dgl.data

* dgl.sampling; dgl.dataloading

* sampling packages

* convert

* subgraph

* deprecate

* subgraph APIs

* All docstrings for convert/subgraph/transform

* almost all funcs under dgl namespace

* WIP: DGLGraph

* done graph query

* message passing functions

* lint

* fix merge error

* fix test

* lint

* fix

Co-authored-by: Quan Gan <coin2028@hotmail.com>
 2020-08-20 23:26:49 +08:00
Da Zheng 75ffc31f76 [Doc] Update the docstring of distributed APIs. (#2025) 
* add doc.

* update DistGraph.

* add DistTensor.

* update DistEmbedding.

* add partition.py

* add sampling.

* fix.

* add graph partition book and create a base class.

* fix test.

* add rst.

* update doc rst.

* update.

* fix.

* fix docs

* update distributed tensor and embeddings.

* add checks.

* update DistGraph.

* update initialization.

* fix graph partition book.

* update graph partition book.

* update partition.

* update partition.

* fix.

* add example code.

* update DistGraph

* Update python/dgl/distributed/dist_context.py

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_context.py

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_dataloader.py

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_dataloader.py

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_dataloader.py

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* update initialize.

* update dataloader.

* update distgraph.

* update DistGraph.

* update DistTensor.

* update.

* more updates.

* fix lint.

* add num_nodes and num_edges

Co-authored-by: Chao Ma <mctt90@gmail.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
 2020-08-18 11:53:45 -07:00
Minjie Wang 5cb5759366 [Doc] split docs to multiple rst files (#2037) 2020-08-17 19:02:31 +08:00
Quan (Andy) Gan cd48435206 [Transform] Docstring and subframes (#1962) 
* update knn graph docs

* more docs

* [Doc] transform module docstrings

* remove copy_ndata and copy_edata

* fix

* lint

* fix

* fix

* fix

* clean up docstrings

* fix docstring

* dtype specifications

* addresses comments

* fix

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
 2020-08-13 10:41:43 +08:00
Tianjun Xiao e262e11083 [Doc] Message passing and NN User Guide (#1991) 
* add message passing user gude rst

* add nn user guide

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2020-08-11 16:20:16 +08:00
Minjie Wang c2cd6eb22e [Doc] Reorg doc (#1989) 2020-08-10 23:19:03 +08:00
Zihao Ye 2fa2b4534e [Feature] Support higher order derivative for message passing. (#1877) 
* upd

* fix typo
 2020-07-28 23:11:06 +08:00
Zihao Ye bc209bff94 [bugfix] Fix the deterministic of kernel test and add documentation. (#1799) 
* upd

* upd

* upd

* relax

* relax too

* upd
 2020-07-14 04:22:31 +08:00
Quan (Andy) Gan 168a88e570 [Sampling] NodeDataLoader for node classification (#1635) 
* neighbor sampler data loader first commit

* more commit

* nodedataloader

* fix

* update RGCN example

* update OGB

* fixes

* fix minibatch RGCN crashing with self loop

* reverting gatconv test code

* fix

* change to new solution that doesn't require tf dataloader

* fix

* lint

* fix

* fixes

* change doc

* fix docstring

* docstring fixes

* return seeds and input nodes from data loader

* fixes

* fix test

* fix windows build problem

* add pytorch wrapper

* fixes

* add pytorch wrapper

* add unit test

* add -1 support to sample_neighbors & fix docstrings

* docstring fix

* lint

* add minibatch rgcn evaluations

Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Tong He <hetong007@gmail.com>
 2020-07-02 16:31:05 +08:00
Mufei Li 36c7b77167 [LifeSci] Move to Independent Repo (#1592) 
* Move LifeSci

* Remove doc
 2020-06-05 21:28:24 +08:00
Zihao Ye 93ac29ce34 [Refactor] Unify DGLGraph, BatchedDGLGraph and DGLSubGraph (#1216) 
* upd

* upd

* upd

* lint

* fix

* fix test

* fix

* fix

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd tutorial

* upd

* upd

* fix kg

* upd doc organization

* refresh test

* upd

* refactor doc

* fix lint

Co-authored-by: Minjie Wang <minjie.wang@nyu.edu>
 2020-03-05 18:03:57 +08:00
Minjie Wang 5967d81782 [Doc] Re-organize API docs and tutorials (#1222) 
* reorg tutorials and api docs

* fix
 2020-01-26 21:26:34 +08:00
Minjie Wang 17aab8128a [Doc] update working with multiple backend section (#1128) 
* update work with different backend section

* fix some warnings

* Update backend.rst

* Update index.rst

Co-authored-by: VoVAllen <VoVAllen@users.noreply.github.com>
 2019-12-24 17:32:56 +08:00
Quan (Andy) Gan 3ee7e11268 [Hetero][Tutorial] Heterograph tutorials (#878) 
* heterograph tutorial skeleton

* [WIP][Tutorial] Heterogeneous graph tutorial

* fix

* update
 2019-10-08 15:33:54 +08:00
VoVAllen 1e2abc9ae9 [Docs] Adjust doc (#808) 
* fix doc

* poke ci

* poke ci

* upd

* fix doc

* upd

* add title for all nn

* upd
 2019-08-31 00:17:49 +08:00
Minjie Wang 90e78c5854 [FFI] FFI container support, custom structure extension via Object (#693) 
* WIP: import tvm runtime node system

* WIP: object system

* containers

* tested basic container composition

* tested custom object

* fix setattr bug

* tested object container return

* fix lint

* some comments about get/set state

* fix lint

* fix lint

* update cython

* fix cython

* ffi doc

* fix doc
 2019-07-01 14:40:07 -04:00
Minjie Wang ebbb6296f9 [Doc] doc page for builtin functions (#642) 
* doc page for builtin functions; install from source doc

* upload rst

* update
 2019-06-10 18:29:28 -04:00
Da Zheng acefb9a9f0 [BUGFIX] fix the problems in the sampling tutorial. (#523) 
* add index.

* update.

* update tutorial.
 2019-05-07 18:19:07 -07:00
Mufei Li 3cbfc25a32 [Tutorial] Batched Graph Classification (#360) 
* batched_graph_classification

* Fix

* Fix

* update tutorial with new dataset

* Final

* Fix doc for dataset

* small fix
 2019-01-25 15:13:52 -05:00
Minjie Wang 192bd952de [Doc] fix broken link in doc (#344) 2019-01-07 17:51:36 -05:00
Minjie Wang 6f9ae8d61e [Doc] main doc page update and contribute guide (#336) 
* reorg the doc mainpage

* contribute guide
 2019-01-04 17:02:37 -05:00
Aston Zhang 534ea8c970 [Doc] Update index.rst (#328) 2018-12-26 19:29:00 -05:00
Haibin Lin d10baaeff6 [DOC] Fix repo link (#295) 
* Update index.rst

* Update index.rst
 2018-12-11 14:41:15 -05:00
Minjie Wang c620bfc2b7 [Doc] faq & env (#263) 
* faq & env

* add update version script; 0.0.1 -> 0.1.0
 2018-12-05 19:18:33 -05:00
Da Zheng aabba9d4d9 [Doc] minor fix in overview (#256) 2018-12-05 16:27:52 -05:00
VoVAllen 31800e7170 [Doc] Fix typo at doc index (#241) 
Fix typo at doc index
 2018-12-04 15:05:37 -05:00
VoVAllen 16cc528757 [Doc] Improve Capsule with Jinyang & Fix wrong tutorial level layout (#236) 
* improve capsule tutorial with jinyang

* fix wrong layout of second-level tutorial

* delete transformer
 2018-12-04 10:46:49 -05:00
Minjie Wang 10e18ed982 [Doc] overview and others (#222) 
* model tutorials overview

* update the 1_first

* revised overview and summarized "what is DGL" in glance
 2018-12-03 17:31:35 -05:00