a7fe461c1c
[Doc] Single-machine Multi-GPU node classification tutorial ( #2976 )
...
* multi-GPU node classification tutorial
* Update 2_node_classification.py
* fixes
* elaborate a bit more
* address comments
* address comments
2021-06-08 10:28:02 +08:00
e2a28a6c8e
[Doc] Revised Two Issues in Message Passing Tutorial ( #2983 )
...
* [Doc] modify the dimension of weight to Numpy broadcasting rule
* [Doc] modify the user defined reduce function
Co-authored-by: zhjwy9343 <6593865@qq.com >
2021-06-05 18:54:31 +08:00
b1628f2398
[Tutorial] Distributed node classification. ( #2969 )
...
* add init version.
* fix build.
* fix format.
* fix.
* fix.
* fix format.
* update README.
* avoid running CI on distributed training tutorials.
* Update tutorials/dist/1_node_classification.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
* fix.
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2021-06-04 21:50:16 +08:00
0437b16497
[Doc] Fix a typo in the tutorial for Neighbor Sampling ( #2935 )
...
Fix a typo in the tutorial for "Introduction of Neighbor Sampling for GNN Training".
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2021-06-01 13:59:22 +08:00
09642d7c21
[Tutorial] Single Machine Multi-GPU Minibatch Graph Classification ( #2940 )
...
* Update
* Update
* Update tutorials/multi/1_graph_classification.py
Co-authored-by: Tong He <hetong007@gmail.com >
* Update
* Update
* Update
Co-authored-by: Ubuntu <ubuntu@ip-172-31-4-21.us-west-2.compute.internal >
Co-authored-by: Tong He <hetong007@gmail.com >
2021-05-31 18:36:34 +08:00
c46602d7d8
[Doc] Fix a typo in the tutorial for link prediction ( #2928 )
...
Fix a typo in the tutorial for "Link Prediction using Graph Neural Networks".
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-05-23 22:43:45 +08:00
103444c58f
Remove __len__ method from DGLGraph ( #2902 )
...
* Update heterograph.py
* remove unit tests
* replace tutorial
2021-05-11 14:06:18 +08:00
337b155970
[Doc] fix tutorial - blitz 4 link prediction ( #2726 )
...
The number of edges should be same as posive eids.
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-03-18 14:36:58 +08:00
99751d4960
[Doc] Rename block to message flow graph ( #2702 )
...
* rename block to mfg
* revert
* rename
2021-02-25 18:26:19 +08:00
71d53d9eef
add thumbnails for tutorials ( #2695 )
...
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-02-23 20:33:35 +08:00
da2f690a5a
[Doc] Clarify link prediction tutorial ( #2673 )
...
* link prediction clarification
* fix
2021-02-23 19:41:54 +08:00
8a07ab7737
[Doc] Tutorials re-organization ( #2683 )
...
* reorg
* change titles
* rm some stale API doc; minor fix
* fix docs
* add warning
* rm new-tutorial run in ci
* lint
2021-02-20 17:42:45 +08:00
9e04a52abd
[Doc] Reorganize tutorial ( #2678 )
2021-02-19 13:49:13 +08:00
a9f8f2589c
[Doc] Update GraphDataLoader in our docs ( #2504 )
...
* update graphdataloader in docs
* fix
* update examples
* fix sagpool
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2021-01-11 13:11:19 +08:00
492ad9be81
[Fix] Avoid Overloading Nonzero for PyTorch Backend ( #2434 )
...
* Update gatedgraphconv.py
* Update entity_classify.py
* Update data-process.rst
* Update reading_data.py
* Update data-process.rst
* Update utils.py
* Update knowledge_graph.py
* Update entity_classify.py
* Update rdf.py
* Update entity_classify_mb.py
* Update test_classify.py
* Update tensor.py
* Update sparse.py
* Update entity_classify_mp.py
* Update 6_line_graph.py
2020-12-20 13:12:17 +08:00
95dc971b7d
[Doc] Some functions used in the tutorial are deprecated ( #2398 )
...
* Some functions used in the tutorial are deprecated
I'm receiving register_message_func and register_reduce_func are deprecated error. I have updated the code such that message and reduce functions are passed to g.send and g.recv
* Update 3_pagerank.py.bak
Co-authored-by: Zihao Ye <expye@outlook.com >
2020-12-09 13:11:10 +08:00
edb978772c
[Doc, UG, Tutorial] Misc Fix ( #2376 )
...
* Update
* Update
* Update
* Update
* Update
2020-11-30 13:40:10 +08:00
4125f63e72
Update docs ( #2123 )
...
* Remove SSE
* Update env_var.rst
2020-08-28 20:35:36 +08:00
ef78d675e9
Fix docs ( #2073 )
...
* remove mxnet tutorial
* remove sse
* fix docs
2020-08-20 15:37:50 +08:00
100d932865
Update ( #2062 )
...
Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal >
2020-08-19 17:42:48 +08:00
be444e52d9
[Doc/Feature] Refactor, doc update and behavior fix for graphs ( #1983 )
...
* Update graph
* Fix for dgl.graph
* from_scipy
* Replace canonical_etypes with relations
* from_networkx
* Update for hetero_from_relations
* Roll back the change of canonical_etypes to relations
* heterograph
* bipartite
* Update doc
* Fix lint
* Fix lint
* Fix test cases
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Fix test
* Fix
* Update
* Use DGLError
* Update
* Update
* Update
* Update
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Fix
* Fix
* Update
* Update
* Update
* Update
* Update
* Update
* rewrite sanity checks
* delete unnecessary checks
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Fix
* Update
* Update
* Update
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Fix
* Update
* Fix
* Update
* Fix
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
Co-authored-by: Quan Gan <coin2028@hotmail.com >
2020-08-18 04:26:29 +08:00
001d793711
[Dataset] SSTDataset ( #1918 )
...
* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* SSTDataset
* Update tree.py
2020-08-03 19:15:28 +08:00
68a978d4de
[Model] Fixes JTNN for 0.5 ( #1879 )
...
* jtnn and fixes
* make metagraph a method
* fix test
* fix
2020-07-30 13:36:08 +08:00
44089c8b4d
[Refactor][Graph] Merge DGLGraph and DGLHeteroGraph ( #1862 )
...
* Merge
* [Graph][CUDA] Graph on GPU and many refactoring (#1791 )
* change edge_ids behavior and C++ impl
* fix unittests; remove utils.Index in edge_id
* pass mx and th tests
* pass tf test
* add aten::Scatter_
* Add nonzero; impl CSRGetDataAndIndices/CSRSliceMatrix
* CSRGetData and CSRGetDataAndIndices passed tests
* CSRSliceMatrix basic tests
* fix bug in empty slice
* CUDA CSRHasDuplicate
* has_node; has_edge_between
* predecessors, successors
* deprecate send/recv; fix send_and_recv
* deprecate send/recv; fix send_and_recv
* in_edges; out_edges; all_edges; apply_edges
* in deg/out deg
* subgraph/edge_subgraph
* adj
* in_subgraph/out_subgraph
* sample neighbors
* set/get_n/e_repr
* wip: working on refactoring all idtypes
* pass ndata/edata tests on gpu
* fix
* stash
* workaround nonzero issue
* stash
* nx conversion
* test_hetero_basics except update routines
* test_update_routines
* test_hetero_basics for pytorch
* more fixes
* WIP: flatten graph
* wip: flatten
* test_flatten
* test_to_device
* fix bug in to_homo
* fix bug in CSRSliceMatrix
* pass subgraph test
* fix send_and_recv
* fix filter
* test_heterograph
* passed all pytorch tests
* fix mx unittest
* fix pytorch test_nn
* fix all unittests for PyTorch
* passed all mxnet tests
* lint
* fix tf nn test
* pass all tf tests
* lint
* lint
* change deprecation
* try fix compile
* lint
* update METIDS
* fix utest
* fix
* fix utests
* try debug
* revert
* small fix
* fix utests
* upd
* upd
* upd
* fix
* upd
* upd
* upd
* upd
* upd
* trigger
* +1s
* [kernel] Use heterograph index instead of unitgraph index (#1813 )
* upd
* upd
* upd
* fix
* upd
* upd
* upd
* upd
* upd
* trigger
* +1s
* [Graph] Mutation for Heterograph (#1818 )
* mutation add_nodes and add_edges
* Add support for remove_edges, remove_nodes, add_selfloop, remove_selfloop
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
* upd
* upd
* upd
* fix
* [Transfom] Mutable transform (#1833 )
* add nodesy
* All three
* Fix
* lint
* Add some test case
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* fix
* triger
* Fix
* fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
* [Graph] Migrate Batch & Readout module to heterograph (#1836 )
* dgl.batch
* unbatch
* fix to device
* reduce readout; segment reduce
* change batch_num_nodes|edges to function
* reduce readout/ softmax
* broadcast
* topk
* fix
* fix tf and mx
* fix some ci
* fix batch but unbatch differently
* new checkk
* upd
* upd
* upd
* idtype behavior; code reorg
* idtype behavior; code reorg
* wip: test_basics
* pass test_basics
* WIP: from nx/ to nx
* missing files
* upd
* pass test_basics:test_nx_conversion
* Fix test
* Fix inplace update
* WIP: fixing tests
* upd
* pass test_transform cpu
* pass gpu test_transform
* pass test_batched_graph
* GPU graph auto cast to int32
* missing file
* stash
* WIP: rgcn-hetero
* Fix two datasety
* upd
* weird
* Fix capsuley
* fuck you
* fuck matthias
* Fix dgmg
* fix bug in block degrees; pass rgcn-hetero
* rgcn
* gat and diffpool fix
also fix ppi and tu dataset
* Tree LSTM
* pointcloud
* rrn; wip: sgc
* resolve conflicts
* upd
* sgc and reddit dataset
* upd
* Fix deepwalk, gindt and gcn
* fix datasets and sign
* optimization
* optimization
* upd
* upd
* Fix GIN
* fix bug in add_nodes add_edges; tagcn
* adaptive sampling and gcmc
* upd
* upd
* fix geometric
* fix
* metapath2vec
* fix agnn
* fix pickling problem of block
* fix utests
* miss file
* linegraph
* upd
* upd
* upd
* graphsage
* stgcn_wave
* fix hgt
* on unittests
* Fix transformer
* Fix HAN
* passed pytorch unittests
* lint
* fix
* Fix cluster gcn
* cluster-gcn is ready
* on fixing block related codes
* 2nd order derivative
* Revert "2nd order derivative"
This reverts commit 523bf6c249bee61b51b1ad1babf42aad4167f206.
* passed torch utests again
* fix all mxnet unittests
* delete some useless tests
* pass all tf cpu tests
* disable
* disable distributed unittest
* fix
* fix
* lint
* fix
* fix
* fix script
* fix tutorial
* fix apply edges bug
* fix 2 basics
* fix tutorial
Co-authored-by: yzh119 <expye@outlook.com >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-7-42.us-west-2.compute.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal >
2020-07-28 14:30:41 +08:00
63feb47c26
[Example] Update Links for Supervised Community Detection with Graph Neural Networks ( #1816 )
...
* Update README.md
* Update README.txt
2020-07-17 17:13:25 +08:00
32ea1b20ef
remove edge list creation ( #1688 )
2020-06-23 21:48:09 +08:00
42b0c38f81
[Kernel] Migrate traversal on adjlist to CSR ( #1650 )
...
* traversal to new framework
* add new
* Fix compile
* Pass test
* keep old version
* lint
* lint
* Fix
* Fix
* Fix compatability with new master
* Fix test and tutorials
* Update according to comments
* Fix test
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
2020-06-19 13:25:18 +08:00
9779c02667
Fix tutorial ( #1587 )
2020-06-04 15:17:03 +08:00
38b9c0f82f
[DGL-LifeSci] Allow Generating Vocabulary from a New Dataset ( #1577 )
...
* Generate vocabulary from a new dataset
* CI"
2020-06-02 14:21:48 +08:00
cfb24790ba
[hotfix] Several bug fix for remove nodes/edges in DGLGraph. ( #1521 )
...
* upd
* upd
* better
2020-05-15 02:29:44 +08:00
1b152bf524
[Doc & Tutorial] Fix dgl.batch and GAT ( #1418 )
...
* Update doc and tutorials
* Fix
2020-04-04 01:23:22 +08:00
67cb7a43a0
[Feature] Deprecate multigraph ( #1389 )
...
* Deprecate multi-graph
* Handle heterograph and edge_ids
* lint
* Fix
* Remove multigraph in C++ end
* Fix lint
* Add some test and fix something
* Fix
* Fix
* upd
* Fix some test case
* Fix
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2020-03-28 21:31:24 +08:00
2cdc4d3c1d
[Doc] Patch tutorial ( #1380 )
...
* patched 1_first
* done 2_basics
* done 4_batch
* done 1_gcn, 9_gat, 2_capsule
* 4_rgcn.py
* revert
* more fix
2020-03-22 10:21:22 +08:00
93ac29ce34
[Refactor] Unify DGLGraph, BatchedDGLGraph and DGLSubGraph ( #1216 )
...
* upd
* upd
* upd
* lint
* fix
* fix test
* fix
* fix
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd tutorial
* upd
* upd
* fix kg
* upd doc organization
* refresh test
* upd
* refactor doc
* fix lint
Co-authored-by: Minjie Wang <minjie.wang@nyu.edu >
2020-03-05 18:03:57 +08:00
c23a61bd5c
fix s3 link ( #1310 )
2020-03-04 21:01:29 +08:00
5967d81782
[Doc] Re-organize API docs and tutorials ( #1222 )
...
* reorg tutorials and api docs
* fix
2020-01-26 21:26:34 +08:00
a199b58a6a
Fix ( #1195 )
2020-01-12 02:47:29 +08:00
17aab8128a
[Doc] update working with multiple backend section ( #1128 )
...
* update work with different backend section
* fix some warnings
* Update backend.rst
* Update index.rst
Co-authored-by: VoVAllen <VoVAllen@users.noreply.github.com >
2019-12-24 17:32:56 +08:00
41114b8758
[Doc] Tree-LSTM in DGL, edit pass for readability ( #1031 )
...
* [Doc] Tree-LSTM in DGL, edit pass for readability
Edit for grammar and style.
How about deleting the last line? "Besides, you..." It needs a transition or some context.
* Update tutorials/models/2_small_graph/3_tree-lstm.py
* Update tutorials/models/2_small_graph/3_tree-lstm.py
2019-12-17 14:14:18 +08:00
f36a451420
[Doc] Old wines new title, edit for grammar and style ( #1027 )
...
* Old wines new title, edit for grammar and style
new descriptive title here and an edit pass @aaronmarkham
* Update tutorials/models/4_old_wines/README.txt
2019-12-16 11:24:58 +08:00
48c7ec4427
[Doc] Fix gcn tutorial ( #1080 )
...
* don't have activation.
* add evaluation.
* address comment.
2019-12-10 02:10:51 -08:00
7784f0668d
[Doc] Small graphs readme.txt, edit pass ( #1030 )
...
* [Doc] Small graphs readme.txt, edit pass
Edit for grammar and style. Should this be an .rst on .txt?
* Update README.txt
2019-12-05 13:48:39 +08:00
5fc7eb6d97
[Doc] Generative models, edit pass ( #1035 )
...
* [Doc] Generative models, edit pass
Edit for grammar and style. Can you clarify "Instead of and/or"?
* Update tutorials/models/3_generative_model/5_dgmg.py
* Update tutorials/models/3_generative_model/5_dgmg.py
Co-Authored-By: Aaron Markham <markhama@amazon.com >
* Update tutorials/models/3_generative_model/5_dgmg.py
Co-Authored-By: Aaron Markham <markhama@amazon.com >
* Update tutorials/models/3_generative_model/5_dgmg.py
Co-Authored-By: Aaron Markham <markhama@amazon.com >
* Update tutorials/models/3_generative_model/5_dgmg.py
Co-Authored-By: Aaron Markham <markhama@amazon.com >
2019-12-03 09:38:47 +08:00
f45178c334
[Doc] Generative models, edit for readability ( #1033 )
...
Edit pass for grammar and style
2019-12-02 14:54:10 +08:00
d6dfaa9b74
[Doc] Capsule network tutorial, edit pass ( #1026 )
...
Edited for grammar and style.
2019-12-01 22:26:51 +08:00
10b104dd35
[Doc] Transformer tutorial, edit for readability ( #1025 )
...
Edit pass for grammar and style
2019-12-01 11:25:51 +08:00
a2b8d8e4e7
[Doc] Giant graph tutorial edit for grammar and style ( #1020 )
...
* Edit for readability
* giant_graph_readme edit for grammar
* NodeFlow and Sampling edit pass for grammar
* Update tutorials/models/1_gnn/9_gat.py
* Update tutorials/models/1_gnn/9_gat.py
2019-11-30 12:31:59 +08:00
dd09f15fa7
[Doc] Stochastic steady-state embedding (SSE) Edit for readability
...
Revisions for grammar and style
2019-11-30 11:37:17 +08:00
22d4de77a0
[Doc] 6_line_graph.py Edit pass ( #1003 )
...
* Edit pass
Updates for grammar and readability
* Update tutorials/models/1_gnn/6_line_graph.py
* Update tutorials/models/1_gnn/6_line_graph.py
* Update tutorials/models/1_gnn/6_line_graph.py
2019-11-29 13:53:43 +08:00
287f387b8c
Edit for readability ( #1002 )
...
Grammar and style updates
2019-11-29 10:53:11 +08:00
Quan (Andy) Gan