mirrors / dmlc--dgl

文件历史

4,082 提交 34 分支 42 Git 标签
Rhett-Ying-patch-1
提交图

540 次代码提交

作者 SHA1 备注 提交日期
Xiangkun Hu d090ae865c [Doc] Chapter 3 Graph data input pipeline in DGL (#1995) 
* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide
 2020-08-11 16:49:45 +08:00
Tianjun Xiao e262e11083 [Doc] Message passing and NN User Guide (#1991) 
* add message passing user gude rst

* add nn user guide

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2020-08-11 16:20:16 +08:00
Minjie Wang c2cd6eb22e [Doc] Reorg doc (#1989) 2020-08-10 23:19:03 +08:00
Zihao Ye 18bfec24cf [hotfix] Refactor edge softmax module (#1967) 
* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd
 2020-08-07 23:50:12 +08:00
Xiangkun Hu 3d8377062c [Doc] Dataset api doc add save_info(), load_info() (#1954) 
* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* update doc

* Update data.rst

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
 2020-08-06 22:25:45 +08:00
Tong He 967ecb8064 [Dataset] Fix the docstring format for dgl.data section (#1941) 
* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* update data rst

* update data doc and docstring

* API doc rst for dataset

* docstring

* update api doc

* add url format

* update docstring

* update citation graph

* update knowledge graph

* update gc datasets

* fix index

* Rst fix (#3)

* Fix syntax

* syntax

* update docstring

* update doc (#4)

* final update

* fix rdflib

* fix rdf

Co-authored-by: HuXiangkun <huxk_hit@qq.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
 2020-08-06 14:47:49 +08:00
Zihao Ye a28bfa9f5f [hotfix] Activate kernel unittest for tensorflow (#1895) 
* upd

* upd

* upd

* upd

* upd

* trigger

* simplify unittest

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2020-07-31 19:57:53 +08:00
Zihao Ye 05a4337901 [Doc] Introduce the relation of message passing APIs and operators in docstring. (#1878) 
* upd

* fix typo

* upd
 2020-07-29 00:41:47 +08:00
Zihao Ye 2fa2b4534e [Feature] Support higher order derivative for message passing. (#1877) 
* upd

* fix typo
 2020-07-28 23:11:06 +08:00
Zihao Ye 2b8eb5be6f [refactor] Move spmm and sddmm operators to operator module (#1873) 
* upd

* upd

* upd

* upd
 2020-07-28 18:39:12 +08:00
Zihao Ye bc209bff94 [bugfix] Fix the deterministic of kernel test and add documentation. (#1799) 
* upd

* upd

* upd

* relax

* relax too

* upd
 2020-07-14 04:22:31 +08:00
Quan (Andy) Gan 168a88e570 [Sampling] NodeDataLoader for node classification (#1635) 
* neighbor sampler data loader first commit

* more commit

* nodedataloader

* fix

* update RGCN example

* update OGB

* fixes

* fix minibatch RGCN crashing with self loop

* reverting gatconv test code

* fix

* change to new solution that doesn't require tf dataloader

* fix

* lint

* fix

* fixes

* change doc

* fix docstring

* docstring fixes

* return seeds and input nodes from data loader

* fixes

* fix test

* fix windows build problem

* add pytorch wrapper

* fixes

* add pytorch wrapper

* add unit test

* add -1 support to sample_neighbors & fix docstrings

* docstring fix

* lint

* add minibatch rgcn evaluations

Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Tong He <hetong007@gmail.com>
 2020-07-02 16:31:05 +08:00
Mufei Li 36c7b77167 [LifeSci] Move to Independent Repo (#1592) 
* Move LifeSci

* Remove doc
 2020-06-05 21:28:24 +08:00
Mufei Li 90d2118da5 [Dataset] Change Cora Split (#1583) 
* Use new version of Cora

* Fix import
 2020-06-03 15:45:38 +08:00
Jinjing Zhou cc07bd44e4 [Readme] Add cuda 10.2 to docs (#1560) 
* add cuda 10.2

* type
 2020-05-25 16:24:30 +08:00
Quan (Andy) Gan 7ba9cbc63e [Docs] Fix docstrings and documentations (#1420) 
* fix docs of to_block

* fix

* oops

* more fixes
 2020-05-19 13:04:55 +08:00
Zihao Ye c2e61ce10b [Refactor] Restrict sparse format for DGLHeteroGraph (#1474) 
* upd

* simplify

* further simplify

* lint

* doc

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* lint

* rename format

* upd

* lint

* upd

* upd

* upd

* udp

* debug

* upd

* upd

* upd

* upd

* upd

* 无可厚非吧

* 中三边肥

* 你一定要喊吗

* lint

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* Update unit_graph.h

Co-authored-by: Zihao Ye <yzh119@192.168.0.110>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2020-05-14 22:11:12 +08:00
Adam J. Stewart 8d20c24928 [Docs] Fix typos in env vars docs (#1429) 
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2020-04-09 12:33:06 +08:00
Mufei Li d3560b7155 [DGL-LifeSci] Documentation (#1414) 
* Update

* Update

* Update
 2020-04-02 21:19:07 +08:00
Jinjing Zhou e9440acb06 [TF] TF backend fix and new logic to choose backend (#1393) 
* TF backend fix and new logic to choose backend

* fix

* fix

* fix

* fix

* fix backend

* fix

* dlpack alignment

* add flag

* flag

* lint

* lint

* remove unused

* several fixes

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2020-03-30 18:45:17 +08:00
Adam J. Stewart 08fcda325b [Doc] Fix link to backends docs (#1376) 
Co-authored-by: Tong He <hetong007@gmail.com>
 2020-03-25 18:20:09 +08:00
Mufei Li 166275754c Update instructions for building from source (#1363) 
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2020-03-16 19:38:36 +08:00
xiang song(charlie.song) 7ee77f72ae Fix submodule has submodules (#1332) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-60-78.ec2.internal>
 2020-03-09 02:40:10 +08:00
Zihao Ye 09ade2f265 upd (#1321) 2020-03-06 14:17:48 +08:00
Zihao Ye 93ac29ce34 [Refactor] Unify DGLGraph, BatchedDGLGraph and DGLSubGraph (#1216) 
* upd

* upd

* upd

* lint

* fix

* fix test

* fix

* fix

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd tutorial

* upd

* upd

* fix kg

* upd doc organization

* refresh test

* upd

* refactor doc

* fix lint

Co-authored-by: Minjie Wang <minjie.wang@nyu.edu>
 2020-03-05 18:03:57 +08:00
Minjie Wang 5967d81782 [Doc] Re-organize API docs and tutorials (#1222) 
* reorg tutorials and api docs

* fix
 2020-01-26 21:26:34 +08:00
Tong He f1a8f926a4 [Feature] Add environment variable to switch on/off MXNet set_np_shape (#1207) 
* add env var

* Trigger CI

* simplification

* add doc
 2020-01-20 13:54:14 +08:00
VoVAllen a00636a02b [Tensorflow] Several nn & example (#1191) 
* several nn example

* appnp

* fix lint

* lint

* add dgi

* fix

* fix

* fix

* fff

* docs

* 111

* fix

* change init

* change result

* tiaocan+1

* fix

* fix lint

* fix

* fix
 2020-01-19 22:48:40 +08:00
Zihao Ye ca302a13ac [Feature] Add dgl.nn.*.Sequential for usability (#1166) 
* upd

* upd

* upd

* upd

* lint

* upd

* upd

* upd

* upd

Co-authored-by: VoVAllen <VoVAllen@users.noreply.github.com>
 2020-01-09 12:39:22 +08:00
VoVAllen 319118341d [Dataset] Change download repo link to https://data.dgl.ai (CDN) (#1175) 
* change download link to cdn

* Update env_var.rst
 2020-01-07 17:16:45 +08:00
Minjie Wang 17aab8128a [Doc] update working with multiple backend section (#1128) 
* update work with different backend section

* fix some warnings

* Update backend.rst

* Update index.rst

Co-authored-by: VoVAllen <VoVAllen@users.noreply.github.com>
 2019-12-24 17:32:56 +08:00
Mufei Li cf9ba90fd4 [Chem] ACNN and various utilities (#1117) 
* Add several splitting methods

* Update

* Update

* Update

* Update

* Update

* Fix

* Update

* Update

* Update

* Update

* Fix

* Fix

* Fix

* Fix

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Finally

* CI
 2019-12-19 11:54:40 +08:00
Da Zheng 869093e890 fix doc of EdgeSampler. (#1093) 2019-12-12 19:15:06 -08:00
Da Zheng 65a904c565 update instruction. (#1052) 2019-12-01 15:25:42 -08:00
Quan (Andy) Gan 0897548a91 [RFC][Doc] Contribution Guideline updates (#1015) 
* Update contribute.rst

* Update contribute.rst

* Update contribute.rst

* Update contribute.rst
 2019-11-29 16:59:12 +08:00
John Andrilla c9ac6c9889 [Doc] NN Modules Edit for grammar and style (#991) 
* Edit for grammar and style

Improve the flow and readability

* Update docs/source/features/nn.rst

Better now? NN Modules as a title is vague
 2019-11-27 22:40:19 +08:00
John Andrilla 832d93c63b [Doc] Grammatical updates (#990) 
* grammatical updates

Edit pass for readability. 
Can you clarify: "are of different, but shapes that can be broadcast." Are they of different shapes, but both can be broadcast?

* Update docs/source/features/builtin.rst

Okay now? Check this for logic.
 2019-11-27 17:37:17 +08:00
John Andrilla 72cad95222 [Doc] Grammar and style edit pass (#980) 
* Grammar and style edit pass

In the opening, it would be great to provide some rationale for why you recommend conda or pip.

* Update docs/source/install/index.rst

Co-Authored-By: Aaron Markham <markhama@amazon.com>

* Update docs/source/install/index.rst

Co-Authored-By: Aaron Markham <markhama@amazon.com>

* Update docs/source/install/index.rst

Co-Authored-By: Aaron Markham <markhama@amazon.com>
 2019-11-27 13:32:22 +08:00
Mufei Li ead64de98e [Hetero] Batching/Unbatching DGLHeteroGraph (#1017) 
* Update

* Update

* Update

* Fix

* CI style fix

* CI fix style

* Fix

* Try CI

* Fix test

* Update

* Update

* Update

* Update
 2019-11-26 14:40:50 +08:00
Da Zheng 168fc2cfda fix installation instruction. (#1024) 2019-11-22 17:49:17 +08:00
Zihao Ye 9a0511c8e9 [NN] nn modules & examples update (#890) 
* upd

* damn it

* fuck

* fuck pylint

* fudge

* remove some comments about MXNet

* upd

* upd

* damn it

* damn it

* fuck

* fuck

* upd

* upd

* pylint bastard

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd
 2019-11-03 17:29:42 -05:00
John Andrilla a85382b0ff [doc] simple readability and style changes (#965) 2019-11-01 17:28:18 +08:00
Mufei Li 52c7ef49fc [Model Zoo] AttentiveFP (#955) 
* Update

* Fix style

* Update

* Update

* Fix

* Update

* Update
 2019-10-26 01:57:34 +08:00
Mufei Li 577cf2e63b [Model Zoo] Refactor and Add Utils for Chemistry (#928) 
* Refactor

* Add note

* Update

* CI
 2019-10-22 00:47:45 +08:00
Aaron Markham 9c095a725a [Doc] minor spelling updates (#935) 
* minor spelling updates

* Update docs/source/features/builtin.rst
 2019-10-19 00:47:07 +08:00
Quan (Andy) Gan 3ee7e11268 [Hetero][Tutorial] Heterograph tutorials (#878) 
* heterograph tutorial skeleton

* [WIP][Tutorial] Heterogeneous graph tutorial

* fix

* update
 2019-10-08 15:33:54 +08:00
Mufei Li e2b7f745ca [Hetero] Doc (#892) 
* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* style fixes & undefined name fix

* transpose=False in test
 2019-10-06 20:17:40 +08:00
Da Zheng 15b951d4c4 [KG][Model] Knowledge graph embeddings (#888) 
* upd

* fig edgebatch edges

* add test

* trigger

* Update README.md for pytorch PinSage example.

Add noting that the PinSage model example under
example/pytorch/recommendation only work with Python 3.6+
as its dataset loader depends on stanfordnlp package
which work only with Python 3.6+.

* Provid a frame agnostic API to test nn modules on both CPU and CUDA side.

1. make dgl.nn.xxx frame agnostic
2. make test.backend include dgl.nn modules
3. modify test_edge_softmax of test/mxnet/test_nn.py and
    test/pytorch/test_nn.py work on both CPU and GPU

* Fix style

* Delete unused code

* Make agnostic test only related to tests/backend

1. clear all agnostic related code in dgl.nn
2. make test_graph_conv agnostic to cpu/gpu

* Fix code style

* fix

* doc

* Make all test code under tests.mxnet/pytorch.test_nn.py
work on both CPU and GPU.

* Fix syntex

* Remove rand

* Add TAGCN nn.module and example

* Now tagcn can run on CPU.

* Add unitest for TGConv

* Fix style

* For pubmed dataset, using --lr=0.005 can achieve better acc

* Fix style

* Fix some descriptions

* trigger

* Fix doc

* Add nn.TGConv and example

* Fix bug

* Update data in mxnet.tagcn test acc.

* Fix some comments and code

* delete useless code

* Fix namming

* Fix bug

* Fix bug

* Add test for mxnet TAGCov

* Add test code for mxnet TAGCov

* Update some docs

* Fix some code

* Update docs dgl.nn.mxnet

* Update weight init

* Fix

* init version.

* change default value of regularization.

* avoid specifying adversarial_temperature

* use default eval_interval.

* remove original model.

* remove optimizer.

* set default value of num_proc

* set default value of log_interval.

* don't need to set neg_sample_size_valid.

* remove unused code.

* use uni_weight by default.

* unify model.

* rename model.

* remove unnecessary data sampler.

* remove the code for checkpoint.

* fix eval.

* raise exception in invalid arguments.

* remove RowAdagrad.

* remove unsupported score function for now.

* Fix bugs of kg
Update README

* Update Readme for mxnet distmult

* Update README.md

* Update README.md

* revert changes on dmlc

* add tests.

* update CI.

* add tests script.

* reorder tests in CI.

* measure performance.

* add results on wn18

* remove some code.

* rename the training script.

* new results on TransE.

* remove --train.

* add format.

* fix.

* use EdgeSubgraph.

* create PBGNegEdgeSubgraph to simplify the code.

* fix test

* fix CI.

* run nose for unit tests.

* remove unused code in dataset.

* change argument to save embeddings.

* test training and eval scripts in CI.

* check Pytorch version.

* fix a minor problem in config.

* fix a minor bug.

* fix readme.

* Update README.md

* Update README.md

* Update README.md
 2019-10-02 12:57:29 -07:00
VoVAllen 9c790b1143 [Dataset] Add CoraFull, Amazon, KarateClub, Coauthor Dataset (#855) 
* convert np.ndarray to backend tensor

* add datasets

* add qm7

* add dataset

* add dataset

* fix

* change ppi

* tu dataset

* add datasets

* fix

* fix

* fix

* fix

* add docstring

* docs

* doc
 2019-10-01 01:19:59 +08:00
VoVAllen e16667bfb9 [Fix] Fix Transform (#876) 
* add transform

* lint

* lint

* fix

* fixmx

* fix

* add test

* fix typo

* fix default num_classes

* change to non-inplace operation

* fix lint

* fix

* fix

* fix lint

* fixlint
 2019-09-26 21:21:53 -04:00