a208e8868b
[Misc] Black auto fix. ( #4680 )
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* [Misc] Black auto fix.
* fix pylint disable
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2022-10-08 14:15:56 +08:00
ba62b730b4
Disable tensoradapter and "using backend: xxx" log by default ( #3684 )
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* fix
* lint
* lint
* address comment
2022-01-25 19:32:54 +08:00
b81efb2b2d
[PyTorch][Bugfix] Use uint8 instead of bool in pytorch to be compatible with nightly version ( #3406 )
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* Use uint8 instead of bool in pytorch
* Handle type aliases
* Fix syntax error
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-10-14 17:34:55 +08:00
79305862ec
allow for configuring default_dir ( #3277 )
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* allow for configuring default_dir
* allow for using DGLDEFAULTDIR environment variable
* Update env_var.rst
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-08-27 01:29:49 +08:00
a7e941c379
[Feature] Add support for sparse embedding ( #2451 )
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* Add sparse embedding for dgl and update rgcn example
* upd
* Fix
* Revert "Fix"
This reverts commit 4da87cdfb8b8c3506b7fc7376cd2385ba8045c2a.
* Fix
* upd
* upd
* Fix
* Add unitest and update impl
* fix
* Clean up rgcn example code
* upd
* upd
* update
* Fix
* update score
* sparse for sage
* remove model sparse
* upd
* upd
* remove global norm
* revert delete model_sparse.py
* update according to comments
* Fix doc
* upd
* Fix test
* upd
* lint
* lint
* lint
* upd
* upd
* clean up
Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal >
2021-01-28 00:26:49 +08:00
e805470101
addressing post-merge comments ( #2455 )
2020-12-26 17:58:15 +08:00
9a7235faf2
[Performance] Use allocator from PyTorch if possible ( #2328 )
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* first commit
* some thoughts
* move around
* more commit
* more fixes
* now it uses torch allocator
* fix symbol export error
* fix
* fixes
* test fix
* add script
* building separate library per version
* fix for vs2019
* more fixes
* fix on windows build
* update jenkinsfile
* auto copy built dlls for windows
* lint and installation guide update
* fix
* specify conda environment
* set environment for ci
* fix
* fix
* fix
* fix again
* revert
* fix cmake
* fix
* switch to using python interpreter path
* remove scripts
* debug
* oops sorry
* Update index.rst
* Update index.rst
* copies automatically, no need for this
* do not print message if library not found
* tiny fixes
* debug on nightly
* replace add_compile_definitions to make CMake 3.5 happy
* fix linking to wrong lib for multiple pytorch envs
* changed building strategy
* fix nightly
* fix windows
* fix windows again
* setup bugfix
* address comments
* change README
2020-12-25 13:57:51 +08:00
2b8eb5be6f
[refactor] Move spmm and sddmm operators to operator module ( #1873 )
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* upd
* upd
* upd
* upd
2020-07-28 18:39:12 +08:00
44089c8b4d
[Refactor][Graph] Merge DGLGraph and DGLHeteroGraph ( #1862 )
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* Merge
* [Graph][CUDA] Graph on GPU and many refactoring (#1791 )
* change edge_ids behavior and C++ impl
* fix unittests; remove utils.Index in edge_id
* pass mx and th tests
* pass tf test
* add aten::Scatter_
* Add nonzero; impl CSRGetDataAndIndices/CSRSliceMatrix
* CSRGetData and CSRGetDataAndIndices passed tests
* CSRSliceMatrix basic tests
* fix bug in empty slice
* CUDA CSRHasDuplicate
* has_node; has_edge_between
* predecessors, successors
* deprecate send/recv; fix send_and_recv
* deprecate send/recv; fix send_and_recv
* in_edges; out_edges; all_edges; apply_edges
* in deg/out deg
* subgraph/edge_subgraph
* adj
* in_subgraph/out_subgraph
* sample neighbors
* set/get_n/e_repr
* wip: working on refactoring all idtypes
* pass ndata/edata tests on gpu
* fix
* stash
* workaround nonzero issue
* stash
* nx conversion
* test_hetero_basics except update routines
* test_update_routines
* test_hetero_basics for pytorch
* more fixes
* WIP: flatten graph
* wip: flatten
* test_flatten
* test_to_device
* fix bug in to_homo
* fix bug in CSRSliceMatrix
* pass subgraph test
* fix send_and_recv
* fix filter
* test_heterograph
* passed all pytorch tests
* fix mx unittest
* fix pytorch test_nn
* fix all unittests for PyTorch
* passed all mxnet tests
* lint
* fix tf nn test
* pass all tf tests
* lint
* lint
* change deprecation
* try fix compile
* lint
* update METIDS
* fix utest
* fix
* fix utests
* try debug
* revert
* small fix
* fix utests
* upd
* upd
* upd
* fix
* upd
* upd
* upd
* upd
* upd
* trigger
* +1s
* [kernel] Use heterograph index instead of unitgraph index (#1813 )
* upd
* upd
* upd
* fix
* upd
* upd
* upd
* upd
* upd
* trigger
* +1s
* [Graph] Mutation for Heterograph (#1818 )
* mutation add_nodes and add_edges
* Add support for remove_edges, remove_nodes, add_selfloop, remove_selfloop
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
* upd
* upd
* upd
* fix
* [Transfom] Mutable transform (#1833 )
* add nodesy
* All three
* Fix
* lint
* Add some test case
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* fix
* triger
* Fix
* fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
* [Graph] Migrate Batch & Readout module to heterograph (#1836 )
* dgl.batch
* unbatch
* fix to device
* reduce readout; segment reduce
* change batch_num_nodes|edges to function
* reduce readout/ softmax
* broadcast
* topk
* fix
* fix tf and mx
* fix some ci
* fix batch but unbatch differently
* new checkk
* upd
* upd
* upd
* idtype behavior; code reorg
* idtype behavior; code reorg
* wip: test_basics
* pass test_basics
* WIP: from nx/ to nx
* missing files
* upd
* pass test_basics:test_nx_conversion
* Fix test
* Fix inplace update
* WIP: fixing tests
* upd
* pass test_transform cpu
* pass gpu test_transform
* pass test_batched_graph
* GPU graph auto cast to int32
* missing file
* stash
* WIP: rgcn-hetero
* Fix two datasety
* upd
* weird
* Fix capsuley
* fuck you
* fuck matthias
* Fix dgmg
* fix bug in block degrees; pass rgcn-hetero
* rgcn
* gat and diffpool fix
also fix ppi and tu dataset
* Tree LSTM
* pointcloud
* rrn; wip: sgc
* resolve conflicts
* upd
* sgc and reddit dataset
* upd
* Fix deepwalk, gindt and gcn
* fix datasets and sign
* optimization
* optimization
* upd
* upd
* Fix GIN
* fix bug in add_nodes add_edges; tagcn
* adaptive sampling and gcmc
* upd
* upd
* fix geometric
* fix
* metapath2vec
* fix agnn
* fix pickling problem of block
* fix utests
* miss file
* linegraph
* upd
* upd
* upd
* graphsage
* stgcn_wave
* fix hgt
* on unittests
* Fix transformer
* Fix HAN
* passed pytorch unittests
* lint
* fix
* Fix cluster gcn
* cluster-gcn is ready
* on fixing block related codes
* 2nd order derivative
* Revert "2nd order derivative"
This reverts commit 523bf6c249bee61b51b1ad1babf42aad4167f206.
* passed torch utests again
* fix all mxnet unittests
* delete some useless tests
* pass all tf cpu tests
* disable
* disable distributed unittest
* fix
* fix
* lint
* fix
* fix
* fix script
* fix tutorial
* fix apply edges bug
* fix 2 basics
* fix tutorial
Co-authored-by: yzh119 <expye@outlook.com >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-7-42.us-west-2.compute.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal >
2020-07-28 14:30:41 +08:00
bc209bff94
[bugfix] Fix the deterministic of kernel test and add documentation. ( #1799 )
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* upd
* upd
* upd
* relax
* relax too
* upd
2020-07-14 04:22:31 +08:00
f25b1a064d
[Feature] Autograd of gspmm and gsddmm on PyTorch/MXNet/Tensorflow ( #1680 )
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* init
* reverse(by minjie
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* gpu
* upd
* upd
* upd
* upd
* udp
* upd
* upd
* imidiot
* fix
* upd
* upd
* upd
* udp
* upd
* upd
* fix
* udp
* upd
* upd
* upd
* upd
* upd
* fix
* remove redundency
* upd
* upd
* upd
* cache
* upd
* upd
* upd
* upd
* upd
* udp
* upd
* trigger
* upd
* fix
* upd
* unused import
* upd
* upd
2020-07-13 23:21:22 +08:00
43d9f43a27
backend selection ( #1424 )
2020-04-06 20:44:29 +08:00
e9440acb06
[TF] TF backend fix and new logic to choose backend ( #1393 )
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* TF backend fix and new logic to choose backend
* fix
* fix
* fix
* fix
* fix backend
* fix
* dlpack alignment
* add flag
* flag
* lint
* lint
* remove unused
* several fixes
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2020-03-30 18:45:17 +08:00
dd65ee211e
[CI] Change tests for flexibility
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* change ci image
* fix
* force bash
* fix
* fix python version
* fix
* fix
* fix
* update gpu
* cuda
* jenkins
* fix build sh
* fix
* Revert "fix"
This reverts commit 6b091914b3ef6b4300fa662ee375aa4b27944f5c.
* try fix
* fix
* Revert "fix"
This reverts commit e42c3035fa4974c6b197aaba0748f7b45113ddaa.
* try fix
* fix
* fix
* fix
* fix
* fix
* fix
* fix tests
* try fix
* fix
* fix
* fix
* fix
* fix
* fix
* fix ctx problem
* fix many tests
* fix typo
* add backend
* move to pytorch folder
* fix?
* fix ci
* try skip
* try false
* try?
* try?
* Revert to 7d9a52f
* fix various
* fix lint
* Revert Jenkinsfile
* revert env
* revert env
* address comment
* remove file
2019-12-16 14:54:37 +08:00
cd907cddfa
[Tutorial] Add sse tutorial & MXNet Tutorial CI ( #252 )
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* add sse tutorial
* add mxnet tutorial ci
* fix ci
* fix ci
* fix ci
* fix ci
* fix ci
* fix ci
* Fix ci
* Fix ci
* Fix ci
* fix ci
* fix ci
* fix ci
* fix ci
* fix ci
* fix ci
* Fix CI
Fix CI image
* permission fix
* fix a bug in the code.
* small fix
* fix doc
* fix ci
* shorten the iters
* fix
* remove extra file
* add load_backend api to dynamically switch to another backend
* try fix
* fix tutorial
* fix tutorial
* fix bug in tutorial
2018-12-05 16:21:44 -05:00
79a510252b
Pickling support ( #155 )
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* pickling support
* resorting to suggested way of pickling
* custom attribute pickling check
* working around a weird pytorch pickling bug
* including partial frame case
* pickling everything now
* fix as requested
2018-11-16 17:19:20 -05:00
7241a9c008
[Backend] backend interface ( #109 )
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* backend interface
* small fix
* more comments to the data type dict
* WIP
* convert_to and narrow
* WIP
* pytorch and numpy backend; WIP on mxnet backend
* mxnet backend
* narrow
* Fix all usages
* fix for mx
* fix for mx
* fix mx
* fix mx
* fix mx
* fix mx
* fix mx
* fix mx
* fix mx
* revert jenkins
* add sparse_matrix api
* sparse matrix api
* some fixme
* Fix as requested
2018-11-04 21:42:39 -05:00
9e9a9488f1
[GraphIndex] Immutable graph index using MXNet CSRArray ( #86 )
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* add immutable graph index.
* update ImmutableGraphIndex.
* add benchmarks of subgraph generation.
* fix node_subgraphs.
* use scipy synthetic data in immutable graph.
* create immutable_graph.
* use spmv in gcn.
* fix immutable graph index.
* update graph index.
* create ImmutableSubgraphIndex.
* return subgraph node and edge mapping.
* fix benchmark.
* add mapping to subgraph nid.
* test in_edges and out_edges.
* update benchmark.
* Fix immutable subgraph.
* complete in_edges and out_edges.
* fix benchmarks.
* add test on node_subgraphs
* add sse.
* construct subgraphs in parallel.
* add in/out degree(s).
* make immutable graph index backend-specific.
* implement has_edge(s) and edge_id(s).
* Revert "use spmv in gcn."
This reverts commit 9cfed5f5fb3dd2ed9b98745348b1c0e9731ed7f7.
* implement node_subgraphs in GraphIndex.
* fix sse.
* address comments.
* address comments.
* Update mxnet docker.
2018-10-26 11:28:25 -07:00
5567f4a4d9
[BACKEND] Add MXNet backend. ( #77 )
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* support mxnet.
* add mxnet version of GCN.
* rename mxnet.nd as F.
* add mxnet GAT.
* enable GPU for GCN.
* fix MXNet GCN train.
* Use adam to optimize GAT
* support more operators.
* support sparse arrays.
* update mxnet backend.
* support index_copy.
* remove NN.
* update mxnet backend.
* temp check in.
* fix data conversion.
* add test.
* clean up mxnet backend.
* update mxnet examples.
* Revert "remove NN."
This reverts commit d815d9a0ec619f9ce9099c48cd35db9d8e947483.
* temp disable MXNet version of NN.
2018-10-14 11:15:48 -04:00
b24daa6607
change to rel import within dgl
2018-09-16 16:14:37 -04:00
68fb5f7e51
Reduce API ( #15 )
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* add reduce_msg related api to dgl graph
* add reduce_sum, switch backend from numpy to pytorch
* update gat gcn to use reduce msg api
* remove reduce_sum
* add built-in reduce functions
2018-07-04 11:09:08 +09:00
15a2c22c98
Reorg folders; basic impl of the APIs
2018-06-14 21:37:43 -04:00
Hongzhi (Steve), Chen