bb43d0423a
[Benchmark] relocate distributed node classification ( #5681 )
2023-06-01 14:02:34 +08:00
ac6be7d761
[Benchmark] update node classification for multigpu benchmark ( #5674 )
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Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com >
2023-05-12 20:15:55 +08:00
41baa0e448
[Example] GatedGCN ( #5659 )
2023-05-11 18:07:52 +08:00
d64f7c4808
[Benchmark] log train time and test accuracy, choose device ( #5662 )
2023-05-10 14:59:21 +08:00
f41934df87
[Sparse] Add conversion between DGLGraph and SparseMatrix. ( #5553 )
2023-04-20 18:00:34 +08:00
de292c7a82
[Example] Sparse Example for HAN ( #5568 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2023-04-19 22:31:22 +08:00
a1f7498240
[Example] Fix Various Examples Related to TorchMetrics ( #5521 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2023-04-10 15:54:00 +08:00
5008af2210
[Misc] Rename number_of_edges and number_of_nodes to num_edges and num_nodes in examples. ( #5492 )
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* pytorch_example
* fix
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-03-29 11:01:20 +08:00
a07305301e
Update main.py ( #5460 )
2023-03-22 21:01:16 +08:00
8d99d30a82
add a link about the removed TGN example ( #5456 )
2023-03-15 22:08:38 +08:00
b7ce4b6a0c
Tensorflow examples fix ( #5433 )
2023-03-09 10:38:19 +08:00
bcf9923b32
[Model] Add dgl.nn.CuGraphSAGEConv model ( #5137 )
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* add CuGraphSAGEConv model
* fix lint issues
* update model to reflect changes in make_mfg_csr(), move max_in_degree to forward()
* lintrunner
* allow reset_parameters()
* remove norm option, simplify test
* allow full graph fallback option, add example
* address comments
* address reviews
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Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2023-02-22 13:43:28 +08:00
9fe5092c17
lintrunner ( #5326 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-02-19 22:50:07 +08:00
704bcaf6dd
examples ( #5323 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-02-19 08:35:15 +08:00
19b3cea166
[Model] Update CuGraphRelGraphConv to use pylibcugraphops=23.02 ( #5217 )
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* update cugraph_relgraphconv
* update equality test
* update cugraph rgcn example
* update RelGraphConvAgg based on latest API changes
* enable fallback option to fg when fanout is large
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Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2023-02-15 20:11:20 +08:00
b3308ae795
Cleanup mock_sparse related code. ( #5230 )
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* remove_mock_sparse_example
* mock_sparse_test
* remove_mock_sparse
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Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2023-02-01 15:17:14 +08:00
30fb03a6bc
Update example with spmatrix. ( #5219 )
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* update
* graph
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2023-01-20 15:39:55 +08:00
cdfd1e382f
Delete train_sampling_unsupervised.py ( #5161 )
2023-01-12 11:15:48 -08:00
56ffb650fe
[API Deprecation]Deprecate contrib module ( #5114 )
2023-01-06 20:16:01 +08:00
436de3d120
[API Deprecation] Remove _dataloading and tgcn example ( #5118 )
2023-01-06 19:51:55 +08:00
c55ab2d147
deprecate candidates in dataloader ( #5117 )
2023-01-06 16:18:32 +08:00
a506ebe82b
[Example][Refactor] Multi-gpu graphsage link prediction example refactor ( #5091 )
2023-01-05 20:59:39 +08:00
ec3934d0d1
[Example] Sparse Graph Transformer ( #5069 )
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* gt example
* update
* update
* update
* update
* lint
* Update examples/sparse/graph_transformer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2023-01-05 08:50:38 +08:00
9169fc3541
[Sparse] Polish sparse matrix creation functions ( #5093 )
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* update
* Update
* Update
* Update
* Update
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2023-01-03 22:59:57 +08:00
37bd092587
[Sparse] Namespace migration and doc update ( #5088 )
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* update
* lint
* lint
* comments
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2022-12-29 20:34:29 +08:00
025e43210f
[Sparse] Add tests for sparse examples; Migrate from mock_sparse to mock_sparse2 ( #5073 )
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* pass gcn
* example tests
* pass gcnii, hgnn, sgc, sign
* black
* test file
* add torchmetrics
* migrate appnp, c_and_s, twirls
* fix style
* minor fix
* fix hypergraphatt and twirls
* pass gat
* fix torchmetric
* lintrunner
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-12-29 08:55:25 +08:00
bda6a816be
rename ( #5058 )
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Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2022-12-28 13:27:52 +08:00
6bd8175890
[Sparse] GCNII example ( #5008 )
2022-12-18 14:44:22 +08:00
236fac4fb9
[Misc] Small fix in sparse GCN example ( #5006 )
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Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2022-12-12 15:30:49 +08:00
e28f07812b
[Sparse] GCN Example ( #4996 )
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* add GCN sparse matrix example
* refine GCN example
* refine GCN example
* change train function
* [Bugfix] Turn off `use_alternate_stream` when TensorAdaptor is not enabled (#4987 )
* turn off use_alternate_stream when tensoradaptor is not enabled
* add docstring
* Update (#4997 )
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
* refine GCN example
* add GCN sparse matrix example
* refine GCN example
* refine GCN example
* change train function
* refine GCN example
* add highlight comment
* refine code
* refine code
* refine by black and flake8
* refine the comment to 80 char length
* refine the comment
* refine comment
Co-authored-by: Xin Yao <xiny@nvidia.com >
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2022-12-09 09:19:38 +08:00
c604366d4c
[Sparse][Example] Add TWIRLS example in sparse API ( #4922 )
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* add twirls
* update attention part
* update; add val_like to mock_sparse
* black
2022-12-05 16:56:21 +08:00
b84de903a2
GCN example correction ( #4969 ) ( #4976 )
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Correction like mentioned in #4969
I noticed that there is a normalisation step on line 97 while the normalised values are not used downstream. Even if this was meant to show the normalisation step, it would not be calculating the normalisation step described in the CGN paper. The paper considers both in and out degrees while the normalisation in the code only describes normalisation using the in degrees.
In the end, the normalised values are assigned to g.ndata["norm"] but these values are not used afterwards.
Having a normalisation step here is also unnecessary since the GraphConv layer that is used already takes care of the normalisation. https://docs.dgl.ai/en/0.9.x/_modules/dgl/nn/pytorch/conv/graphconv.html#GraphConv
It confused me for a second thinking that I had to do the normalisation myself but this is already handled by the GraphConf.
2022-12-05 10:00:57 +08:00
943abba3fb
[Example] add entity_sample example of using CuGraphRelGraphConv ( #4827 )
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* add entity_sample example
* update message
* address review, update api call
* Update examples/pytorch/rgcn/entity_sample_cugraph_relgraphconv.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
* Update examples/pytorch/rgcn/entity_sample_cugraph_relgraphconv.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
* Update examples/pytorch/rgcn/entity_sample_cugraph_relgraphconv.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
* address review
* move example and add description
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-12-01 21:09:14 +08:00
a5a0d9ed9d
[Sparse] C&S Example ( #4963 )
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* Update
* Update
* Update
* Update
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2022-12-01 18:35:53 +08:00
611393021a
[API Deprecation] Remove candidates in DGLGraph ( #4946 )
2022-12-01 16:41:53 +08:00
1edc92336b
[Example] Hypergraph attention ( #4941 )
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* hypergraph attention
* address comments
2022-11-28 20:12:37 +08:00
7469bc9284
[Sparse] GAT Example ( #4955 )
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* Update
* Update
* Update
* CI
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2022-11-28 19:23:23 +08:00
0b9f64d607
small ( #4954 )
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Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2022-11-25 17:56:15 +08:00
226d1159a9
[Misc] Auto fix by black. ( #4952 )
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* black on explain_main
* isort
* add dot
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2022-11-25 09:24:44 +08:00
f118ea9537
black ( #4951 )
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Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2022-11-25 09:19:17 +08:00
c53deb26ab
[Sparse] APPNP example ( #4919 )
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* Update
* Update
* Update
* Update
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2022-11-23 14:30:30 +08:00
61fa640193
[Sparse] SGC example ( #4918 )
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* Update
* Update
* Update
* Update
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2022-11-22 17:38:27 +08:00
59f3d6e0b2
[Sparse] Add HGNN example ( #4917 )
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* hgnn example
* desc
* update example index
* address
* replace naming
* address comments
2022-11-22 01:07:05 +08:00
0c70bc23f4
[Sparse] Refactor SIGN model. ( #4921 )
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Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
2022-11-21 23:22:58 +08:00
53895b958a
[Sparse] SIGN example. ( #4908 )
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Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-11-17 16:41:35 +08:00
b377e1b9c1
[Dist][Examples] refactor dist graphsage examples ( #4269 )
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* [Dist][Examples] refactor dist graphsage examples
* refine train_dist.py
* update train_dist_unsupervised.py
* fix debug info
* update train_dist_transductive
* update unsupervised_transductive
* remove distgnn
* fix join() in standalone mode
* change batch_labels to long() for ogbn-papers100M
* free unnecessary mem
* lint
* fix lint
* refine
* fix lint
* fix incorrect args
* refine
2022-11-17 08:35:15 +08:00
3132da2826
Deprecate ( #4864 )
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rename DGLHeteroGraph to DGLGraph
2022-11-15 10:01:01 +08:00
6566c31fba
Fix ogb/ogbn-mag/heter-RGCN example ( #4839 )
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Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-11-09 14:08:01 +08:00
7c788f531c
[Example] Update SEAL+NGNN for ogbl-citation2 ( #4776 )
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* Use black for formatting
* limit line width to 80 characters.
* Use a backslash instead of directly concatenating
* file structure adjustment.
* file structure adjustment(2)
* codes for citation2
* format slight adjustment
* adjust format in models.py
* now it runs normally for all datasets.
* add comments; adjust code order.
* adjust indenting.
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-11-03 10:24:03 +08:00
f9805ef11c
[Example] SEAL+NGNN for ogbl-citation2 ( #4772 )
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* Use black for formatting
* limit line width to 80 characters.
* Use a backslash instead of directly concatenating
* file structure adjustment.
* file structure adjustment(2)
* codes for citation2
* format slight adjustment
* adjust format in models.py
* now it runs normally for all datasets.
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-10-28 00:31:24 +08:00
Rhett Ying