4463b3d6a5
[Sparse] Support strided tensor when calling old DGL APIs ( #5506 )
2023-03-31 23:18:55 +08:00
d45eafd47f
[NN] add gatconv edge_weight ( #5503 )
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Co-authored-by: venzino-han <venzino.han@buzzvil.com >
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2023-03-31 19:53:49 +08:00
2b5921e759
[Dataset] Actor ( #5511 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2023-03-31 10:28:50 +08:00
690f37bbe9
update ( #5507 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2023-03-28 19:22:44 +08:00
5b409bf7f5
Rename_test ( #5487 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-03-24 18:44:24 +08:00
9e532e7def
[Dataset] Chameleon ( #5477 )
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* update
* update
* update
* lint
* update
* CI
* lint
* update doc
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2023-03-23 22:34:00 +08:00
4534650f5f
[Dataset] Add ZINC Dataset ( #5428 )
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* Update dgl.data.rst
* Add files via upload
* Add files via upload
* Add files via upload
* Update zinc.py
* Update dgl.data.rst
* Update test_data.py
* Add files via upload
* Update cluster.py
* Update pattern.py
* Update zinc.py
* Update zinc.py
* Update test_data.py
* lint
* fix
* fix path
* update test on label shape
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Co-authored-by: rudongyu <ru_dongyu@outlook.com >
2023-03-22 18:04:41 +08:00
866c70dace
[Sparse] Fix bugs in Diag format conversions ( #5465 )
2023-03-21 09:24:53 +08:00
8a83027274
[Misc] Merge test utils. ( #5440 )
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* merge
* format
* rename
* sort
* sort
* update
* update
* update
* Update tests/utils/checks.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
---------
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2023-03-20 15:32:45 +08:00
87fb7ed05b
[Config] Enable libxsmm by default for AVX cpu ( #5165 )
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* Enable AVX by default
* Fix linting errors
* Fix win64 build (libxsmm not linked)
Libxsmm on Win64 is not linked, should be disabled by default
* Fix clang format issues
* Change lower supported cpu version to LIBXSMM_X86_AVX2
Change lower supported cpu version to LIBXSMM_X86_AVX2 to address https://github.com/dmlc/dgl/issues/3459 issue
* Fix unit test
Remove assumption that libxsmm is enabled in the config by default (only true for intel CPUs with AVX2 instructions)
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-15-137.us-west-2.compute.internal >
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2023-03-16 02:05:22 +08:00
92e383c3b8
[Sparse] Remove the Python DiagMatrix class ( #5444 )
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* [Sparse] Remove the Python DiagMatrix class
* Update
* Update
* update
* Update
2023-03-15 18:17:52 +08:00
54b4bd0acd
[Data] new functional for creating data splits in graph ( #5418 )
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* new functional for creating data splits in graph
* minor fix in data split implementation
* apply suggestions from code review
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
* refactoring + unit tests
* fix test file name
* move imports to the top
* Revert "fix test file name"
This reverts commit 126323e38c8de6fdc73c826dccc9048aed8f9634.
* remove nccl submodule
* address linter issues
---------
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com >
2023-03-09 18:55:25 +08:00
e250ba3d99
[Misc] Rename test_utils -> pytests_utils. ( #5438 )
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* rename
* sort
* rename
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-03-09 09:42:29 +08:00
fe3d29ac4d
[Dataloading] Ignore edge types without reverse types in edge dataloader ( #5411 )
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* Bugfix for reverse edge issue.
* Resolved copy/paste transcription error
* lint
* Added unit tests for graph with not all reverses.
* linting + added backend device test
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Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com >
2023-03-08 22:04:51 +08:00
ae4a5b7394
[Feature] Add state_dict, load_state_dict, param_groups to dgl.optim.SparseGradOptimizer ( #5311 )
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* init update
* all get/set optm_state
* add unit tests
* add docstring
* fix for multiple embeddings
* move embedding methods to private
* fix lint
* fix unit tests
* resolve comments
* merge master
2023-03-08 16:46:34 +08:00
178290249e
[Dataset] Add PATTERN dataset ( #5422 )
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* add PATTERN dataset
* fix bug
* fix bugs
* fix issues
* refine according to dongyu's comments
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Co-authored-by: BuptTab <gyzhou2000@gmail.com >
Co-authored-by: rudongyu <ru_dongyu@outlook.com >
2023-03-08 14:08:12 +08:00
8d5d8962ad
[Refactor] Replace third_party/nccl with PyTorch's NCCL backend ( #4989 )
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* expose GeneratePermutation
* add sparse_all_to_all_push
* add sparse_all_to_all_pull
* add unit test
* handle world_size=1
* remove python nccl wrapper
* remove the nccl dependency
* use pinned memory to speedup D2H copy
* fix lint
* resolve comments
* fix lint
* fix ut
* resolve comments
2023-03-08 12:59:10 +08:00
851d66fa65
[Bugfix] Fix duplicate worker_init_fn argument when provided in DataLoader ( #5420 )
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* fix duplicate worker_init_fn
* lint
* lint again
* uugh
2023-03-06 23:41:53 +08:00
f00cd6efbd
[Utils] Edge and LINKX homophily measure ( #5382 )
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* Update
* lint
* lint
* r prefix
* CI
* lint
* skip TF
* Update
* edge homophily
* linkx homophily
* format
* skip TF
* fix test
* update
* lint
* lint
* review
* lint
* update
* lint
* update
* CI
---------
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2023-03-03 16:58:20 +08:00
a53ecd229b
[Dataset] Add CLUSTER dataset ( #5389 )
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* add CLUSTER dataset
* refine according to dongyu's comments
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Co-authored-by: rudongyu <ru_dongyu@outlook.com >
2023-03-01 16:36:12 +08:00
999c624582
[Sparse] Support converson to/from torch sparse tensor. ( #5388 )
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* [Sparse] Support converson to/from torch sparse tensor.
* Update
2023-02-28 17:27:23 +08:00
fcf5ad5f49
[Utils] Node homophily measure ( #5376 )
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* Update
* lint
* lint
* r prefix
* CI
* lint
* skip TF
* Update
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2023-02-24 14:26:02 +08:00
5ffd2a022c
[Sparse] Support column-wise softmax ( #5377 )
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* [Sparse] Support column-wise softmax
* Update python/dgl/sparse/softmax.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
---------
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2023-02-24 10:03:43 +08:00
45153fc078
[Model] Implemented SubgraphX Explainer for Homogeneous graph ( #5315 )
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* subgraphx commit
* nits
* newline eof added
* lint fix
* test script updated to use default values
* lint fix
* graphs that are used for test cases are updated to a small graph
* lint formatted
* test paramter adj to complete the test under 20s
* lint fixes
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Co-authored-by: kxm180046 <kxm180046@utdallas.edu >
2023-02-23 12:50:31 +08:00
7ff041528c
[Refactor] Add default ffi namespce capi ( #5359 )
2023-02-22 21:33:30 +08:00
74c9d27d16
[Misc] Auto-format tests. ( #5313 )
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* [Misc] Auto-format tests.
* more
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-02-17 23:33:44 +08:00
86193c26f7
[Misc] Reorg python test (with backend) according to the guideline. ( #5312 )
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* rename
* remove test transpose
* udpate
* rename
* cleanup
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-02-17 16:11:39 +08:00
d9e550369f
[Misc] Reorg python test according to the guideline. ( #5307 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal >
2023-02-17 16:08:20 +08:00
czkkkkkk