 Quan (Andy) Gan
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823eb5be1b
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[Doc] dgl.sampling docstring fixes (#1928)
|
2020-08-04 17:12:46 +08:00 |
|
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Xiangkun Hu
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451ed6d836
|
[Dataset] SBMMixtureDataset (#1920)
* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* SBMMixture dataset
* Update sbm.py
* fix example
* Update sbm.py
* Revert "Update sbm.py"
This reverts commit 066db5c89bd5e159981ae7cad1bfb883ea5db71d.
* Update sbm.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
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2020-08-04 15:06:53 +08:00 |
|
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Zihao Ye
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d2ccd218cf
|
[hotfix] Allow creating graph from edges with restrict formats excluding coo. (#1926)
* upd
* upd
* upd
* upd
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2020-08-04 00:33:36 +08:00 |
|
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Xiangkun Hu
|
2c141229d5
|
[Dataset] RedditDataset (#1914)
* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* RedditDataset
* Update reddit.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
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2020-08-03 23:49:22 +08:00 |
|
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Xiangkun Hu
|
37aa99c510
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[Dataset] GNNBenchmarkDataset (#1912)
* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* gnn benchmark dataset
* Update gnn_benckmark.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
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2020-08-03 23:28:58 +08:00 |
|
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Zihao Ye
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56339b34bf
|
[Fix] Update ogb examples according to new API. (#1922)
* upd
* upd
Co-authored-by: Ubuntu <ubuntu@ip-172-31-29-3.us-east-2.compute.internal>
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2020-08-03 23:08:50 +08:00 |
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Xiangkun Hu
|
001d793711
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[Dataset] SSTDataset (#1918)
* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* SSTDataset
* Update tree.py
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2020-08-03 19:15:28 +08:00 |
|
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Xiangkun Hu
|
73b9c6f18c
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[Dataset] GDELTDataset (#1911)
* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* gdelt dataset
* Update gdelt.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
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2020-08-03 17:43:50 +08:00 |
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Xiangkun Hu
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06ea03d0f8
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[Dataset] ICEWS18Dataset (#1913)
* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* ICEWS18Dataset
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
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2020-08-03 17:07:02 +08:00 |
|
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Tong He
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b5be4f4bbf
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[Dataset] Update dataset hash with deterministic function (#1919)
* update hash with deterministic function
* update docstring
* add test on determination
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2020-08-03 16:17:00 +08:00 |
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Tong He
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39ed096630
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[Dataset] Builtin LegacyTUDataset and TUDataset (#1891)
* add LegacyTUDataset and TUDataset
* update docstrings and url
* update docstrings
* add hash to fix save/load
* update docstring and use hash
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
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2020-08-03 14:40:36 +08:00 |
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Quan (Andy) Gan
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65e9644e54
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[Bugfix] Fix _deprecate not found error for now (#1916)
|
2020-08-03 12:59:23 +08:00 |
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Xiangkun Hu
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22485e58d3
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[Dataset] BitcoinOTCDataset (#1910)
* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* bitcoinotc dataset
* Update bitcoinotc.py
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2020-08-03 12:15:04 +08:00 |
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Xiangkun Hu
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d22f96feb4
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[Dataset] QM7bDataset (#1915)
* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* QM7bDataset
* Update qm7b.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
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2020-08-03 11:58:31 +08:00 |
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Da Zheng
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a4c931a9bf
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[Distributed] Support multiple servers (#1886)
* client init graph on the backup servers.
* fix.
* test multi-server.
* fix anonymous dist tensors.
* check #parts.
* fix init_data
* add multi-server multi-client tests.
* update tests in kvstore.
* fix.
* verify the loaded partition.
* fix a bug.
* fix lint.
* fix.
* fix example.
* fix rpc.
* fix pull/push handler for backup kvstore
* fix example readme.
* change ip.
* update docstring.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>
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2020-08-02 19:50:34 -07:00 |
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Xiangkun Hu
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9bcce7bead
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[Dataset] PPIDataset (#1906)
* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* Revert "Revert "PPIDataset""
This reverts commit 6938a4cbe3ac6e38d3e0188b5699e5c952a6102e.
* update doc string
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
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2020-08-03 00:30:01 +08:00 |
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Xiangkun Hu
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743c38401c
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[Dataset] KarateClubDataset (#1897)
* karateclub dataset
* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* Update karate.py
* doc string
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
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2020-08-02 22:39:11 +08:00 |
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xiang song(charlie.song)
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cb2c4ec17b
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Fix (#1909)
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
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2020-08-02 14:53:21 +08:00 |
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xiang song(charlie.song)
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56bbf9cb6d
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[Distributed][Example] Distributed training for unsupervised graphsage (#1853)
* Standalone can run
* fix
* Add save
* Fix
* Fix
* Fix
* Fix
* debug
* test
* test
* Fix
* Fix
* log
* Fix
* fix
* Profile
* auto sync grad
* update
* add test for unsupervised dist training
* upd
* Fix lr
* Fix update
* sync
* fix
* Revert "fix"
This reverts commit d5caa7398b36125f6d6e2c742a95c6ff4298c9e9.
* Fix
* unsupervised
* Fix
* remove debug
* Add test case for dist_graph find_edges()
* Fix
* skip tensorflow test for find_edges
* Update readme
* remove some test
* upd
* Update partition_graph.py
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-24-210.ec2.internal>
Co-authored-by: Da Zheng <zhengda1936@gmail.com>
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2020-08-01 12:24:55 -07:00 |
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Zihao Ye
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34a067eaa0
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[bugfix] Fix the memory leak issue of Cluster GAT under 0.5 kernel and simplify the bipartite GAT. (#1908)
* uipd
* upd
* upd
* upd
* upd
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2020-08-02 00:59:27 +08:00 |
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xiang song(charlie.song)
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303e42367d
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Hot Fix docstring (#1907)
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
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2020-08-01 23:24:24 +08:00 |
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xiang song(charlie.song)
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b347590a37
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[Dataset] Citation graph (#1902)
* citation graph
* GCN example use new citatoin dataset
* mxnet gat
* triger
* Fix
* Fix gat
* fix
* Fix tensorflow dgi
* Fix appnp, graphsage for mxnet
* fix monet and sgc for mxnet
* Fix tagcn
* update sgc, appnp
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
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2020-08-01 19:25:50 +08:00 |
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Da Zheng
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4be4b13424
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[Distributed] add copy_partitions.py (#1866)
* fix bugs.
* eval on both vaidation and testing.
* add script.
* update.
* update launch.
* make train_dist.py independent.
* update readme.
* update readme.
* update readme.
* update readme.
* generate undirected graph.
* rename conf_file to part_config
* use rsync
* make train_dist independent.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-115.us-west-2.compute.internal>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
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2020-07-31 11:11:56 -07:00 |
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Chao Ma
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e5e1a99d46
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[KVStore] Fix bug in barrier. (#1904)
* update
* update
* fix lint
* update
* update
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2020-07-31 22:01:03 +08:00 |
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Zihao Ye
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03f251ced1
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upd (#1905)
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2020-07-31 20:13:24 +08:00 |
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Zihao Ye
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a28bfa9f5f
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[hotfix] Activate kernel unittest for tensorflow (#1895)
* upd
* upd
* upd
* upd
* upd
* trigger
* simplify unittest
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
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2020-07-31 19:57:53 +08:00 |
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Tong He
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18c960a1b5
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[Dataset] Builtin MiniGCDataset (#1890)
* add minigc
* fix
* update docstrings
* update docstring
* add hash to fix save/load
* update hash
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2020-07-31 17:40:02 +08:00 |
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Tong He
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f05bd4971c
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[Dataset] Builtin GINDataset (#1889)
* update GINDataset
* update
* update docstring
* update
* update docstrings
* add hash to fix save/load
* fix some stupid bugs
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
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2020-07-31 17:12:14 +08:00 |
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Tong He
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fb02aa2d85
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[Dataset] Add hash function to distinguish instances from the same dataset class (#1894)
* add hash function in base data classes
* update doc
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2020-07-31 15:53:32 +08:00 |
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Quan (Andy) Gan
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71c7ee0e48
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[Bugfix] add DGLWarning class (#1898)
* add DGLWarning class
* docstrings
* lint
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2020-07-31 13:18:36 +08:00 |
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Minjie Wang
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b9ae536ecf
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[Hotfix] fix excessive warnings (#1896)
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2020-07-31 10:32:21 +08:00 |
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xiang song(charlie.song)
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dbb028acc8
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[Dataset] Builtin knowledge graph dataset (#1881)
* buildin knowledge graph dataset
* upd
* docstring
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Tong He <hetong007@gmail.com>
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2020-07-30 23:37:33 +08:00 |
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Minjie Wang
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f4608c2227
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[CUDA][Kernel] A bunch of int64 kernels for COO and CSR (#1883)
* COO sort
* COOToCSR
* CSR2COO
* CSRSort; CSRTranspose
* pass all CSR tests
* lint
* remove int32 conversion
* fix tensorflow nn tests
* turn on CI
* fix
* addreess comments
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2020-07-30 21:02:07 +08:00 |
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Chao Ma
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5b515cf667
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[KVStore] Support group barrier (#1880)
* udpate
* update
* update
* update
* update
* update
* update
* update
* fix lint
* update
* update
* update
* update
* udpate
* update
* update
* update
* update
* update
* update
* update
* update
* update
* update
* update
* update
* update
* update
* update
* update
Co-authored-by: Da Zheng <zhengda1936@gmail.com>
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2020-07-30 19:21:20 +08:00 |
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Minjie Wang
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444becf00a
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[Misc] Move many deprecated codes to the deprecate folder (#1893)
* some file movements
* move some codes to deprecated
* more deprecation
* lint
* remove useless test
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2020-07-30 18:17:33 +08:00 |
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Quan (Andy) Gan
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68a978d4de
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[Model] Fixes JTNN for 0.5 (#1879)
* jtnn and fixes
* make metagraph a method
* fix test
* fix
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2020-07-30 13:36:08 +08:00 |
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xiang song(charlie.song)
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faa1dc56fc
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hot fix (#1888)
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
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2020-07-30 12:02:49 +08:00 |
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xiang song(charlie.song)
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aee1067941
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[Dataset] RDF dataset with DGL-Dataset template (#1869)
* update rdf builtin dataset
* Fix
* use new dataset
* fix
* rdf dataset using new framework
* tf work
* Fix mxnet
* Fix tensorflow
* Fix mxnet
* Update
* upd
* update some docstring
* clean some dead code
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
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2020-07-30 09:12:00 +08:00 |
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Da Zheng
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3e2f94ed20
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[Distributed] Refactor distributed training to new DGLGraph. (#1874)
* fix tests in partition.
* fix DistGraph.
* fix without shared memory.
* fix sampling.
* enable distributed test.
* fix tests.
* fix a bug in shared-mem heterograph.
* print better error messages.
* fix.
* don't specify formats.
* fix.
* fix
* small fix.
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2020-07-28 22:07:24 -07:00 |
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Zihao Ye
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05a4337901
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[Doc] Introduce the relation of message passing APIs and operators in docstring. (#1878)
* upd
* fix typo
* upd
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2020-07-29 00:41:47 +08:00 |
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Zihao Ye
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2fa2b4534e
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[Feature] Support higher order derivative for message passing. (#1877)
* upd
* fix typo
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2020-07-28 23:11:06 +08:00 |
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Zihao Ye
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2b8eb5be6f
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[refactor] Move spmm and sddmm operators to operator module (#1873)
* upd
* upd
* upd
* upd
|
2020-07-28 18:39:12 +08:00 |
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Jinjing Zhou
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71cf78652d
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Revert "[Distributed] DistDataloader (#1870)" (#1876)
This reverts commit 6557291fdc.
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2020-07-28 17:57:57 +08:00 |
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Jinjing Zhou
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6557291fdc
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[Distributed] DistDataloader (#1870)
* 111
* 111
* fix
* 111
* fix
* 11
* fix
* lint
* Update __init__.py
* lint
* fix
* lint
* fix
* fix
* fix
* fix
* fix
* try fix
* try fix
* fix
* Revert "fix"
This reverts commit a0b954fd4e99b7df92b53db8334dcb583d6e1551.
* fixes.
* fix.
* fix test.
* fix exit.
* fix.
* fix
* fix
* lint
* lint
* lint
* fix
* Update .gitignore
Co-authored-by: Da Zheng <zhengda1936@gmail.com>
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2020-07-28 16:36:37 +08:00 |
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Qidong Su
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40950629b2
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[Feature] Shared memory utilities (#1807)
* update
* update
* update
* update
* fix
* update
* fix
* update
* update
* win32
* update
* fix
* update
* update
* update
* updat
* update
* update
* fix
* update
* update
* update
* update
* update
* fix
* TODO
* 111
* fix
* minor fix
* minor fix
* fox
* Update shared_mem_manager.cc
* update
* update
* update
* update metis
* update metis
* update
Co-authored-by: VoVAllen <jz1749@nyu.edu>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
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2020-07-28 15:26:15 +08:00 |
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xiang song(charlie.song)
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1c1bb77231
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hot fix (#1871)
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal>
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2020-07-28 14:46:27 +08:00 |
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Minjie Wang
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44089c8b4d
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[Refactor][Graph] Merge DGLGraph and DGLHeteroGraph (#1862)
* Merge
* [Graph][CUDA] Graph on GPU and many refactoring (#1791)
* change edge_ids behavior and C++ impl
* fix unittests; remove utils.Index in edge_id
* pass mx and th tests
* pass tf test
* add aten::Scatter_
* Add nonzero; impl CSRGetDataAndIndices/CSRSliceMatrix
* CSRGetData and CSRGetDataAndIndices passed tests
* CSRSliceMatrix basic tests
* fix bug in empty slice
* CUDA CSRHasDuplicate
* has_node; has_edge_between
* predecessors, successors
* deprecate send/recv; fix send_and_recv
* deprecate send/recv; fix send_and_recv
* in_edges; out_edges; all_edges; apply_edges
* in deg/out deg
* subgraph/edge_subgraph
* adj
* in_subgraph/out_subgraph
* sample neighbors
* set/get_n/e_repr
* wip: working on refactoring all idtypes
* pass ndata/edata tests on gpu
* fix
* stash
* workaround nonzero issue
* stash
* nx conversion
* test_hetero_basics except update routines
* test_update_routines
* test_hetero_basics for pytorch
* more fixes
* WIP: flatten graph
* wip: flatten
* test_flatten
* test_to_device
* fix bug in to_homo
* fix bug in CSRSliceMatrix
* pass subgraph test
* fix send_and_recv
* fix filter
* test_heterograph
* passed all pytorch tests
* fix mx unittest
* fix pytorch test_nn
* fix all unittests for PyTorch
* passed all mxnet tests
* lint
* fix tf nn test
* pass all tf tests
* lint
* lint
* change deprecation
* try fix compile
* lint
* update METIDS
* fix utest
* fix
* fix utests
* try debug
* revert
* small fix
* fix utests
* upd
* upd
* upd
* fix
* upd
* upd
* upd
* upd
* upd
* trigger
* +1s
* [kernel] Use heterograph index instead of unitgraph index (#1813)
* upd
* upd
* upd
* fix
* upd
* upd
* upd
* upd
* upd
* trigger
* +1s
* [Graph] Mutation for Heterograph (#1818)
* mutation add_nodes and add_edges
* Add support for remove_edges, remove_nodes, add_selfloop, remove_selfloop
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
* upd
* upd
* upd
* fix
* [Transfom] Mutable transform (#1833)
* add nodesy
* All three
* Fix
* lint
* Add some test case
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* fix
* triger
* Fix
* fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
* [Graph] Migrate Batch & Readout module to heterograph (#1836)
* dgl.batch
* unbatch
* fix to device
* reduce readout; segment reduce
* change batch_num_nodes|edges to function
* reduce readout/ softmax
* broadcast
* topk
* fix
* fix tf and mx
* fix some ci
* fix batch but unbatch differently
* new checkk
* upd
* upd
* upd
* idtype behavior; code reorg
* idtype behavior; code reorg
* wip: test_basics
* pass test_basics
* WIP: from nx/ to nx
* missing files
* upd
* pass test_basics:test_nx_conversion
* Fix test
* Fix inplace update
* WIP: fixing tests
* upd
* pass test_transform cpu
* pass gpu test_transform
* pass test_batched_graph
* GPU graph auto cast to int32
* missing file
* stash
* WIP: rgcn-hetero
* Fix two datasety
* upd
* weird
* Fix capsuley
* fuck you
* fuck matthias
* Fix dgmg
* fix bug in block degrees; pass rgcn-hetero
* rgcn
* gat and diffpool fix
also fix ppi and tu dataset
* Tree LSTM
* pointcloud
* rrn; wip: sgc
* resolve conflicts
* upd
* sgc and reddit dataset
* upd
* Fix deepwalk, gindt and gcn
* fix datasets and sign
* optimization
* optimization
* upd
* upd
* Fix GIN
* fix bug in add_nodes add_edges; tagcn
* adaptive sampling and gcmc
* upd
* upd
* fix geometric
* fix
* metapath2vec
* fix agnn
* fix pickling problem of block
* fix utests
* miss file
* linegraph
* upd
* upd
* upd
* graphsage
* stgcn_wave
* fix hgt
* on unittests
* Fix transformer
* Fix HAN
* passed pytorch unittests
* lint
* fix
* Fix cluster gcn
* cluster-gcn is ready
* on fixing block related codes
* 2nd order derivative
* Revert "2nd order derivative"
This reverts commit 523bf6c249bee61b51b1ad1babf42aad4167f206.
* passed torch utests again
* fix all mxnet unittests
* delete some useless tests
* pass all tf cpu tests
* disable
* disable distributed unittest
* fix
* fix
* lint
* fix
* fix
* fix script
* fix tutorial
* fix apply edges bug
* fix 2 basics
* fix tutorial
Co-authored-by: yzh119 <expye@outlook.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-7-42.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal>
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2020-07-28 14:30:41 +08:00 |
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Da Zheng
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015acfd2d8
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[Distributed] Small fixes (#1859)
* fix node/edge_split.
* fix partition.
* support heterograph interface.
* fix test.
* fix
* fix docstring.
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2020-07-27 01:39:48 -07:00 |
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Da Zheng
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ff8f7082a3
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[Distributed] turn off recording on embeddings in the inference. (#1861)
* turn on/off recording in sparse embedding.
* add test.
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2020-07-27 00:42:40 -07:00 |
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Da Zheng
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6963d796c5
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[Distributed] update Embedding API (#1847)
* update.
* update Embedding.
* add comments.
* fix lint
Co-authored-by: Chao Ma <mctt90@gmail.com>
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2020-07-26 11:59:41 -07:00 |
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