56ffb650fe
[API Deprecation]Deprecate contrib module ( #5114 )
2023-01-06 20:16:01 +08:00
611393021a
[API Deprecation] Remove candidates in DGLGraph ( #4946 )
2022-12-01 16:41:53 +08:00
3132da2826
Deprecate ( #4864 )
...
rename DGLHeteroGraph to DGLGraph
2022-11-15 10:01:01 +08:00
1425150459
Fix test naming ( #4023 )
...
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-05-23 17:21:06 +08:00
adb3a7c11e
[BugFix] record/restore pin status when pickle/unpickle ( #3914 )
...
* [BugFix] record/restore pin status when pickle/unpickle
* disable test on TF
* set version as expected
* unpin memory in test
2022-04-09 11:42:23 +08:00
2df4a95f3e
[Feature] Make to_heterogeneous(to_homogeneous(hg)) return hg ( #2958 )
...
* make to_heterogeneous and to_homogeneous invertible
* docstring
* oops
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-06-03 18:50:18 +08:00
ac5c79cdb8
[Bug] Fixes issues in feature pickling and transmission for subgraphs and blocks ( #2139 )
...
* bug fixes
* remove __deepcopy__; not sure what the behavior should be
* lint
* skip gpu test
* fix
* fix dist dataloader
* add comment
* remove assert
2020-09-03 12:48:59 +08:00
aa19df1bbb
[Bugfix] Fix batching isolated node types ( #2035 )
...
* [Bugfix] Fix batching isolated ntypes
* fix test
* remove test.py
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2020-08-18 09:29:05 +08:00
be444e52d9
[Doc/Feature] Refactor, doc update and behavior fix for graphs ( #1983 )
...
* Update graph
* Fix for dgl.graph
* from_scipy
* Replace canonical_etypes with relations
* from_networkx
* Update for hetero_from_relations
* Roll back the change of canonical_etypes to relations
* heterograph
* bipartite
* Update doc
* Fix lint
* Fix lint
* Fix test cases
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Fix test
* Fix
* Update
* Use DGLError
* Update
* Update
* Update
* Update
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Fix
* Fix
* Update
* Update
* Update
* Update
* Update
* Update
* rewrite sanity checks
* delete unnecessary checks
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Fix
* Update
* Update
* Update
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Fix
* Update
* Fix
* Update
* Fix
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
Co-authored-by: Quan Gan <coin2028@hotmail.com >
2020-08-18 04:26:29 +08:00
22167f7203
[Refactor] Enable new kernel in all message passing APIs ( #1953 )
...
* WIP: frame refactor
* new frame
* simple update_all builtin
* move all subgraph routines into the same file
* sddmm & spmm schedule; node & edge udf
* degree bucketing
* some tricky 0deg corner cases
* bug in frame append
* merge test_hetero_basics and test_basics
* some code rearange
* fix test_heterograph
* add mean spmm
* enable all builtin combinations
* pass gpu test
* pass pytorch tests
* wip
* fix some pt debugging codes
* fix bug in mxnet backward
* pass all mxnet utests
* passed tf tests
* docstring
* lint
* lint
* fix broadcasting bugs
* add warning and clamp for mean reducer
* add test for zero-degree mean
* address comments
* lint
* small fix
2020-08-07 15:40:25 +08:00
68a978d4de
[Model] Fixes JTNN for 0.5 ( #1879 )
...
* jtnn and fixes
* make metagraph a method
* fix test
* fix
2020-07-30 13:36:08 +08:00
44089c8b4d
[Refactor][Graph] Merge DGLGraph and DGLHeteroGraph ( #1862 )
...
* Merge
* [Graph][CUDA] Graph on GPU and many refactoring (#1791 )
* change edge_ids behavior and C++ impl
* fix unittests; remove utils.Index in edge_id
* pass mx and th tests
* pass tf test
* add aten::Scatter_
* Add nonzero; impl CSRGetDataAndIndices/CSRSliceMatrix
* CSRGetData and CSRGetDataAndIndices passed tests
* CSRSliceMatrix basic tests
* fix bug in empty slice
* CUDA CSRHasDuplicate
* has_node; has_edge_between
* predecessors, successors
* deprecate send/recv; fix send_and_recv
* deprecate send/recv; fix send_and_recv
* in_edges; out_edges; all_edges; apply_edges
* in deg/out deg
* subgraph/edge_subgraph
* adj
* in_subgraph/out_subgraph
* sample neighbors
* set/get_n/e_repr
* wip: working on refactoring all idtypes
* pass ndata/edata tests on gpu
* fix
* stash
* workaround nonzero issue
* stash
* nx conversion
* test_hetero_basics except update routines
* test_update_routines
* test_hetero_basics for pytorch
* more fixes
* WIP: flatten graph
* wip: flatten
* test_flatten
* test_to_device
* fix bug in to_homo
* fix bug in CSRSliceMatrix
* pass subgraph test
* fix send_and_recv
* fix filter
* test_heterograph
* passed all pytorch tests
* fix mx unittest
* fix pytorch test_nn
* fix all unittests for PyTorch
* passed all mxnet tests
* lint
* fix tf nn test
* pass all tf tests
* lint
* lint
* change deprecation
* try fix compile
* lint
* update METIDS
* fix utest
* fix
* fix utests
* try debug
* revert
* small fix
* fix utests
* upd
* upd
* upd
* fix
* upd
* upd
* upd
* upd
* upd
* trigger
* +1s
* [kernel] Use heterograph index instead of unitgraph index (#1813 )
* upd
* upd
* upd
* fix
* upd
* upd
* upd
* upd
* upd
* trigger
* +1s
* [Graph] Mutation for Heterograph (#1818 )
* mutation add_nodes and add_edges
* Add support for remove_edges, remove_nodes, add_selfloop, remove_selfloop
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
* upd
* upd
* upd
* fix
* [Transfom] Mutable transform (#1833 )
* add nodesy
* All three
* Fix
* lint
* Add some test case
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* fix
* triger
* Fix
* fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
* [Graph] Migrate Batch & Readout module to heterograph (#1836 )
* dgl.batch
* unbatch
* fix to device
* reduce readout; segment reduce
* change batch_num_nodes|edges to function
* reduce readout/ softmax
* broadcast
* topk
* fix
* fix tf and mx
* fix some ci
* fix batch but unbatch differently
* new checkk
* upd
* upd
* upd
* idtype behavior; code reorg
* idtype behavior; code reorg
* wip: test_basics
* pass test_basics
* WIP: from nx/ to nx
* missing files
* upd
* pass test_basics:test_nx_conversion
* Fix test
* Fix inplace update
* WIP: fixing tests
* upd
* pass test_transform cpu
* pass gpu test_transform
* pass test_batched_graph
* GPU graph auto cast to int32
* missing file
* stash
* WIP: rgcn-hetero
* Fix two datasety
* upd
* weird
* Fix capsuley
* fuck you
* fuck matthias
* Fix dgmg
* fix bug in block degrees; pass rgcn-hetero
* rgcn
* gat and diffpool fix
also fix ppi and tu dataset
* Tree LSTM
* pointcloud
* rrn; wip: sgc
* resolve conflicts
* upd
* sgc and reddit dataset
* upd
* Fix deepwalk, gindt and gcn
* fix datasets and sign
* optimization
* optimization
* upd
* upd
* Fix GIN
* fix bug in add_nodes add_edges; tagcn
* adaptive sampling and gcmc
* upd
* upd
* fix geometric
* fix
* metapath2vec
* fix agnn
* fix pickling problem of block
* fix utests
* miss file
* linegraph
* upd
* upd
* upd
* graphsage
* stgcn_wave
* fix hgt
* on unittests
* Fix transformer
* Fix HAN
* passed pytorch unittests
* lint
* fix
* Fix cluster gcn
* cluster-gcn is ready
* on fixing block related codes
* 2nd order derivative
* Revert "2nd order derivative"
This reverts commit 523bf6c249bee61b51b1ad1babf42aad4167f206.
* passed torch utests again
* fix all mxnet unittests
* delete some useless tests
* pass all tf cpu tests
* disable
* disable distributed unittest
* fix
* fix
* lint
* fix
* fix
* fix script
* fix tutorial
* fix apply edges bug
* fix 2 basics
* fix tutorial
Co-authored-by: yzh119 <expye@outlook.com >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-7-42.us-west-2.compute.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal >
2020-07-28 14:30:41 +08:00
ec2e24be6d
[Feature] Slice dstnode features in NN modules ( #1838 )
...
* slice dstdata from srcdata within nn module
* a bunch of fixes
* add comment
* fix gcmc layer
* repr for blocks
* fix
* fix context
* fix
* do not copy internal columns
* docstring
2020-07-25 21:57:49 +08:00
c13903bf64
fix batched heterograph serializations ( #1794 )
2020-07-13 19:43:56 +08:00
0a4e8b32b6
[Optimization] Optimize pickling of heterograph ( #1570 )
...
* update
* update
* update
* update
* update
* update
* backward compatibility
* update
* update
* update
* update
* update
* test
* test
* update
* update
* update
* update
* update
* update
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2020-06-18 19:43:42 +08:00
67cb7a43a0
[Feature] Deprecate multigraph ( #1389 )
...
* Deprecate multi-graph
* Handle heterograph and edge_ids
* lint
* Fix
* Remove multigraph in C++ end
* Fix lint
* Add some test and fix something
* Fix
* Fix
* upd
* Fix some test case
* Fix
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2020-03-28 21:31:24 +08:00
5dd35580f7
[Feature] Improve sampling speed; Better pickle/unpickle; other fixes ( #1299 )
...
* improve performance of sample_neighbors
* some more improve
* test script
* benchmarks
* multi process
* update more tests
* WIP
* adding two API for state saving
* add create from state
* upd test
* missing file
* wip: pickle/unpickle
* more c apis
* find the problem of empty data array
* add null array; pickling speed is bad
* still bad perf
* still bad perf
* wip
* fix the pickle speed test; now everything looks good
* minor fix
* bugfix
* some lint fix
* address comments
* more fix
* fix lint
* add utest for random.choice
* add utest for dgl.rand_graph
* fix cpp utests
* try fix ci
* fix bug in TF backend
* upd choice docstring
* address comments
* upd
* try fix compile
* add comment
2020-03-02 23:16:05 +08:00
3ef757dbff
[Feature] Pickle support for heterograph ( #1177 )
...
* [Feature] Pickle support for heterograph
* fix lint
Co-authored-by: VoVAllen <VoVAllen@users.noreply.github.com >
2020-01-09 13:27:29 +08:00
653428bdc7
[Feature][Kernel] DGL kernel support ( #596 )
...
* [Kernel] Minigun integration and fused kernel support (#519 )
* kernel interface
* add minigun
* Add cuda build
* functors
* working on binary elewise
* binary reduce
* change kernel interface
* WIP
* wip
* fix minigun
* compile
* binary reduce kernels
* compile
* simple test passed
* more reducers
* fix thrust problem
* fix cmake
* fix cmake; add proper guard for atomic
* WIP: bcast
* WIP
* bcast kernels
* update to new minigun pass-by-value practice
* broadcasting dim
* add copy src and copy edge
* fix linking
* fix none array problem
* fix copy edge
* add device_type and device_id to backend operator
* cache csr adj, remove cache for adjmat and incmat
* custom ops in backend and pytorch impl
* change dgl-mg kernel python interface
* add id_mapping var
* clean up plus v2e spmv schedule
* spmv schedule & clean up fall back
* symbolic message and reduce func, remove bundle func
* new executors
* new backend interface for dgl kernels and pytorch impl
* minor fix
* fix
* fix docstring, comments, func names
* nodeflow
* fix message id mapping and bugs...
* pytorch test case & fix
* backward binary reduce
* fix bug
* WIP: cusparse
* change to int32 csr for cusparse workaround
* disable cusparse
* change back to int64
* broadcasting backward
* cusparse; WIP: add rev_csr
* unit test for kernels
* pytorch backward with dgl kernel
* edge softmax
* fix backward
* improve softmax
* cache edge on device
* cache mappings on device
* fix partial forward code
* cusparse done
* copy_src_sum with cusparse
* rm id getter
* reduce grad for broadcast
* copy edge reduce backward
* kernel unit test for broadcasting
* full kernel unit test
* add cpu kernels
* edge softmax unit test
* missing ref
* fix compile and small bugs
* fix bug in bcast
* Add backward both
* fix torch utests
* expose infershape
* create out tensor in python
* fix c++ lint
* [Kernel] Add GPU utest and kernel utest (#524 )
* fix gpu utest
* cuda utest runnable
* temp disable test nodeflow; unified test for kernel
* cuda test kernel done
* [Kernel] Update kernel branch (#550 )
* [Model] add multiprocessing training with sampling. (#484 )
* reorganize sampling code.
* add multi-process training.
* speed up gcn_cv
* fix graphsage_cv.
* add new API in graph store.
* update barrier impl.
* support both local and distributed training.
* fix multiprocess train.
* fix.
* fix barrier.
* add script for loading data.
* multiprocessing sampling.
* accel training.
* replace pull with spmv for speedup.
* nodeflow copy from parent with context.
* enable GPU.
* fix a bug in graph store.
* enable multi-GPU training.
* fix lint.
* add comments.
* rename to run_store_server.py
* fix gcn_cv.
* fix a minor bug in sampler.
* handle error better in graph store.
* improve graphsage_cv for distributed mode.
* update README.
* fix.
* update.
* [Tutorial] add sampling tutorial. (#522 )
* add sampling tutorial.
* add readme
* update author list.
* fix indent in the code.
* rename the file.
* update tutorial.
* fix the last API.
* update image.
* [BUGFIX] fix the problems in the sampling tutorial. (#523 )
* add index.
* update.
* update tutorial.
* fix gpu utest
* cuda utest runnable
* temp disable test nodeflow; unified test for kernel
* cuda test kernel done
* Fixing typo in JTNN after interface change (#536 )
* [BugFix] Fix getting src and dst id of ALL edges in NodeFlow.apply_block (#515 )
* [Bug Fix] Fix inplace op at backend (#546 )
* Fix inplace operation
* fix line seprator
* [Feature] Add batch and unbatch for immutable graph (#539 )
* Add batch and unbatch for immutable graph
* fix line seprator
* fix lintr
* remove unnecessary include
* fix code review
* [BUGFix] Improve multi-processing training (#526 )
* fix.
* add comment.
* remove.
* temp fix.
* initialize for shared memory.
* fix graphsage.
* fix gcn.
* add more unit tests.
* add more tests.
* avoid creating shared-memory exclusively.
* redefine remote initializer.
* improve initializer.
* fix unit test.
* fix lint.
* fix lint.
* initialize data in the graph store server properly.
* fix test.
* fix test.
* fix test.
* small fix.
* add comments.
* cleanup server.
* test graph store with a random port.
* print.
* print to stderr.
* test1
* test2
* remove comment.
* adjust the initializer signature.
* [API] update graph store API. (#549 )
* add init_ndata and init_edata in DGLGraph.
* adjust SharedMemoryGraph API.
* print warning.
* fix comment.
* update example
* fix.
* fix examples.
* add unit tests.
* add comments.
* [Refactor] Immutable graph index (#543 )
* WIP
* header
* WIP .cc
* WIP
* transpose
* wip
* immutable graph .h and .cc
* WIP: nodeflow.cc
* compile
* remove all tmp dl managed ctx; they caused refcount issue
* one simple test
* WIP: testing
* test_graph
* fix graph index
* fix bug in sampler; pass pytorch utest
* WIP on mxnet
* fix lint
* fix mxnet unittest w/ unfortunate workaround
* fix msvc
* fix lint
* SliceRows and test_nodeflow
* resolve reviews
* resolve reviews
* try fix win ci
* try fix win ci
* poke win ci again
* poke
* lazy multigraph flag; stackoverflow error
* revert node subgraph test
* lazy object
* try fix win build
* try fix win build
* poke ci
* fix build script
* fix compile
* add a todo
* fix reviews
* fix compile
* [Kernel] Update kernel branch (#576 )
* [Model] add multiprocessing training with sampling. (#484 )
* reorganize sampling code.
* add multi-process training.
* speed up gcn_cv
* fix graphsage_cv.
* add new API in graph store.
* update barrier impl.
* support both local and distributed training.
* fix multiprocess train.
* fix.
* fix barrier.
* add script for loading data.
* multiprocessing sampling.
* accel training.
* replace pull with spmv for speedup.
* nodeflow copy from parent with context.
* enable GPU.
* fix a bug in graph store.
* enable multi-GPU training.
* fix lint.
* add comments.
* rename to run_store_server.py
* fix gcn_cv.
* fix a minor bug in sampler.
* handle error better in graph store.
* improve graphsage_cv for distributed mode.
* update README.
* fix.
* update.
* [Tutorial] add sampling tutorial. (#522 )
* add sampling tutorial.
* add readme
* update author list.
* fix indent in the code.
* rename the file.
* update tutorial.
* fix the last API.
* update image.
* [BUGFIX] fix the problems in the sampling tutorial. (#523 )
* add index.
* update.
* update tutorial.
* fix gpu utest
* cuda utest runnable
* temp disable test nodeflow; unified test for kernel
* cuda test kernel done
* Fixing typo in JTNN after interface change (#536 )
* [BugFix] Fix getting src and dst id of ALL edges in NodeFlow.apply_block (#515 )
* [Bug Fix] Fix inplace op at backend (#546 )
* Fix inplace operation
* fix line seprator
* [Feature] Add batch and unbatch for immutable graph (#539 )
* Add batch and unbatch for immutable graph
* fix line seprator
* fix lintr
* remove unnecessary include
* fix code review
* [BUGFix] Improve multi-processing training (#526 )
* fix.
* add comment.
* remove.
* temp fix.
* initialize for shared memory.
* fix graphsage.
* fix gcn.
* add more unit tests.
* add more tests.
* avoid creating shared-memory exclusively.
* redefine remote initializer.
* improve initializer.
* fix unit test.
* fix lint.
* fix lint.
* initialize data in the graph store server properly.
* fix test.
* fix test.
* fix test.
* small fix.
* add comments.
* cleanup server.
* test graph store with a random port.
* print.
* print to stderr.
* test1
* test2
* remove comment.
* adjust the initializer signature.
* [API] update graph store API. (#549 )
* add init_ndata and init_edata in DGLGraph.
* adjust SharedMemoryGraph API.
* print warning.
* fix comment.
* update example
* fix.
* fix examples.
* add unit tests.
* add comments.
* [Refactor] Immutable graph index (#543 )
* WIP
* header
* WIP .cc
* WIP
* transpose
* wip
* immutable graph .h and .cc
* WIP: nodeflow.cc
* compile
* remove all tmp dl managed ctx; they caused refcount issue
* one simple test
* WIP: testing
* test_graph
* fix graph index
* fix bug in sampler; pass pytorch utest
* WIP on mxnet
* fix lint
* fix mxnet unittest w/ unfortunate workaround
* fix msvc
* fix lint
* SliceRows and test_nodeflow
* resolve reviews
* resolve reviews
* try fix win ci
* try fix win ci
* poke win ci again
* poke
* lazy multigraph flag; stackoverflow error
* revert node subgraph test
* lazy object
* try fix win build
* try fix win build
* poke ci
* fix build script
* fix compile
* add a todo
* fix reviews
* fix compile
* all demo use python-3 (#555 )
* [DEMO] Reproduce numbers of distributed training in AMLC giant graph paper (#556 )
* update
* update
* update
* update num_hops
* fix bug
* update
* report numbers of distributed training in AMLC giant graph paper
* [DEMO] Remove duplicate code for sampling (#557 )
* update
* update
* re-use single-machine code
* update
* use relative path
* update
* update
* update
* add __init__.py
* add __init__.py
* import sys, os
* fix typo
* update
* [Perf] Improve performance of graph store. (#554 )
* fix.
* use inplace.
* move to shared memory graph store.
* fix.
* add more unit tests.
* fix.
* fix test.
* fix test.
* disable test.
* fix.
* [BUGIFX] fix a bug in edge_ids (#560 )
* add test.
* fix compute.
* fix test.
* turn on test.
* fix a bug.
* add test.
* fix.
* disable test.
* [DEMO] Add Pytorch demo for distributed sampler (#562 )
* update
* update
* update
* add sender
* update
* remove duplicate cpde
* [Test] Add gtest to project (#547 )
* add gtest module
* add gtest
* fix
* Update CMakeLists.txt
* Update README.md
* [Perf] lazily create msg_index. (#563 )
* lazily create msg_index.
* update test.
* [BUGFIX] fix bugs for running GCN on giant graphs. (#561 )
* load mxnet csr.
* enable load large csr.
* fix
* fix.
* fix int overflow.
* fix test.
* [BugFix] Fix error when bfs_level = 0 in Entity Classification with RGCN (#559 )
* [DEMO] Update demo of distributed sampler (#564 )
* update
* update
* update demo
* add network cpp test (#565 )
* Add unittest for C++ RPC (#566 )
* [CI] Fix CI for cpp test (#570 )
* fix CI for cpp test
* update port number
* [Docker] update docker image (#575 )
* update docker image
* specify lint version
* rm torch import from unified tests
* [Kernel][Scheduler][MXNet] Scheduler for DGL kernels and MXNet backend support (#541 )
* [Model] add multiprocessing training with sampling. (#484 )
* reorganize sampling code.
* add multi-process training.
* speed up gcn_cv
* fix graphsage_cv.
* add new API in graph store.
* update barrier impl.
* support both local and distributed training.
* fix multiprocess train.
* fix.
* fix barrier.
* add script for loading data.
* multiprocessing sampling.
* accel training.
* replace pull with spmv for speedup.
* nodeflow copy from parent with context.
* enable GPU.
* fix a bug in graph store.
* enable multi-GPU training.
* fix lint.
* add comments.
* rename to run_store_server.py
* fix gcn_cv.
* fix a minor bug in sampler.
* handle error better in graph store.
* improve graphsage_cv for distributed mode.
* update README.
* fix.
* update.
* [Tutorial] add sampling tutorial. (#522 )
* add sampling tutorial.
* add readme
* update author list.
* fix indent in the code.
* rename the file.
* update tutorial.
* fix the last API.
* update image.
* [BUGFIX] fix the problems in the sampling tutorial. (#523 )
* add index.
* update.
* update tutorial.
* fix gpu utest
* cuda utest runnable
* temp disable test nodeflow; unified test for kernel
* cuda test kernel done
* edge softmax module
* WIP
* Fixing typo in JTNN after interface change (#536 )
* mxnet backend support
* improve reduce grad
* add max to unittest backend
* fix kernel unittest
* [BugFix] Fix getting src and dst id of ALL edges in NodeFlow.apply_block (#515 )
* lint
* lint
* win build
* [Bug Fix] Fix inplace op at backend (#546 )
* Fix inplace operation
* fix line seprator
* [Feature] Add batch and unbatch for immutable graph (#539 )
* Add batch and unbatch for immutable graph
* fix line seprator
* fix lintr
* remove unnecessary include
* fix code review
* [BUGFix] Improve multi-processing training (#526 )
* fix.
* add comment.
* remove.
* temp fix.
* initialize for shared memory.
* fix graphsage.
* fix gcn.
* add more unit tests.
* add more tests.
* avoid creating shared-memory exclusively.
* redefine remote initializer.
* improve initializer.
* fix unit test.
* fix lint.
* fix lint.
* initialize data in the graph store server properly.
* fix test.
* fix test.
* fix test.
* small fix.
* add comments.
* cleanup server.
* test graph store with a random port.
* print.
* print to stderr.
* test1
* test2
* remove comment.
* adjust the initializer signature.
* try
* fix
* fix
* fix
* fix
* fix
* try
* test
* test
* test
* try
* try
* try
* test
* fix
* try gen_target
* fix gen_target
* fix msvc var_args expand issue
* fix
* [API] update graph store API. (#549 )
* add init_ndata and init_edata in DGLGraph.
* adjust SharedMemoryGraph API.
* print warning.
* fix comment.
* update example
* fix.
* fix examples.
* add unit tests.
* add comments.
* [Refactor] Immutable graph index (#543 )
* WIP
* header
* WIP .cc
* WIP
* transpose
* wip
* immutable graph .h and .cc
* WIP: nodeflow.cc
* compile
* remove all tmp dl managed ctx; they caused refcount issue
* one simple test
* WIP: testing
* test_graph
* fix graph index
* fix bug in sampler; pass pytorch utest
* WIP on mxnet
* fix lint
* fix mxnet unittest w/ unfortunate workaround
* fix msvc
* fix lint
* SliceRows and test_nodeflow
* resolve reviews
* resolve reviews
* try fix win ci
* try fix win ci
* poke win ci again
* poke
* lazy multigraph flag; stackoverflow error
* revert node subgraph test
* lazy object
* try fix win build
* try fix win build
* poke ci
* fix build script
* fix compile
* add a todo
* fix reviews
* fix compile
* WIP
* WIP
* all demo use python-3 (#555 )
* ToImmutable and CopyTo
* [DEMO] Reproduce numbers of distributed training in AMLC giant graph paper (#556 )
* update
* update
* update
* update num_hops
* fix bug
* update
* report numbers of distributed training in AMLC giant graph paper
* [DEMO] Remove duplicate code for sampling (#557 )
* update
* update
* re-use single-machine code
* update
* use relative path
* update
* update
* update
* add __init__.py
* add __init__.py
* import sys, os
* fix typo
* update
* [Perf] Improve performance of graph store. (#554 )
* fix.
* use inplace.
* move to shared memory graph store.
* fix.
* add more unit tests.
* fix.
* fix test.
* fix test.
* disable test.
* fix.
* [BUGIFX] fix a bug in edge_ids (#560 )
* add test.
* fix compute.
* fix test.
* turn on test.
* fix a bug.
* add test.
* fix.
* disable test.
* DGLRetValue DGLContext conversion
* [DEMO] Add Pytorch demo for distributed sampler (#562 )
* update
* update
* update
* add sender
* update
* remove duplicate cpde
* [Test] Add gtest to project (#547 )
* add gtest module
* add gtest
* fix
* Update CMakeLists.txt
* Update README.md
* Add support to convert immutable graph to 32 bits
* [Perf] lazily create msg_index. (#563 )
* lazily create msg_index.
* update test.
* fix binary reduce following new minigun template
* enable both int64 and int32 kernels
* [BUGFIX] fix bugs for running GCN on giant graphs. (#561 )
* load mxnet csr.
* enable load large csr.
* fix
* fix.
* fix int overflow.
* fix test.
* new kernel interface done for CPU
* docstring
* rename & docstring
* copy reduce and backward
* [BugFix] Fix error when bfs_level = 0 in Entity Classification with RGCN (#559 )
* [DEMO] Update demo of distributed sampler (#564 )
* update
* update
* update demo
* adapt cuda kernels to the new interface
* add network cpp test (#565 )
* fix bug
* Add unittest for C++ RPC (#566 )
* [CI] Fix CI for cpp test (#570 )
* fix CI for cpp test
* update port number
* [Docker] update docker image (#575 )
* update docker image
* specify lint version
* rm torch import from unified tests
* remove pytorch-specific test_function
* fix unittest
* fix
* fix unittest backend bug in converting tensor to numpy array
* fix
* mxnet version
* [BUGFIX] fix for MXNet 1.5. (#552 )
* remove clone.
* turn on numpy compatible.
* Revert "remove clone."
This reverts commit 17bbf76ed72ff178df6b3f35addc428048672457.
* revert format changes
* fix mxnet api name
* revert mistakes in previous revert
* roll back CI to 20190523 build
* fix unittest
* disable test_shared_mem_store.py for now
* remove mxnet/test_specialization.py
* sync win64 test script
* fix lowercase
* missing backend in gpu unit test
* transpose to get forward graph
* pass update all
* add sanity check
* passing test_specialization.py
* fix and pass test_function
* fix check
* fix pytorch softmax
* mxnet kernels
* c++ lint
* pylint
* try
* win build
* fix
* win
* ci enable gpu build
* init submodule recursively
* backend docstring
* try
* test win dev
* doc string
* disable pytorch test_nn
* try to fix windows issue
* bug fixed, revert changes
* [Test] fix CI. (#586 )
* disable unit test in mxnet tutorial.
* retry socket connection.
* roll back to set_np_compat
* try to fix multi-processing test hangs when it fails.
* fix test.
* fix.
* doc string
* doc string and clean up
* missing field in ctypes
* fix node flow schedule and unit test
* rename
* pylint
* copy from parent default context
* fix unit test script
* fix
* demo bug in nodeflow gpu test
* [Kernel][Bugfix] fix nodeflow bug (#604 )
* fix nodeflow bug
* remove debug code
* add build gtest option
* fix cmake; fix graph index bug in spmv.py
* remove clone
* fix div rhs grad bug
* [Kernel] Support full builtin method, edge softmax and unit tests (#605 )
* add full builtin support
* unit test
* unit test backend
* edge softmax
* apply edge with builtin
* fix kernel unit test
* disable mxnet test_shared_mem_store
* gen builtin reduce
* enable mxnet gpu unittest
* revert some changes
* docstring
* add note for the hack
* [Kernel][Unittest][CI] Fix MXNet GPU CI (#607 )
* update docker image for MXNet GPU CI
* force all dgl graph input and output on CPU
* fix gpu unittest
* speedup compilation
* add some comments
* lint
* add more comments
* fix as requested
* add some comments
* comment
* lint
* lint
* update pylint
* fix as requested
* lint
* lint
* lint
* docstrings of python DGL kernel entries
* disable lint warnings on arguments in kernel.py
* fix docstring in scheduler
* fix some bug in unittest; try again
* Revert "Merge branch 'kernel' of github.com:zzhang-cn/dgl into kernel"
This reverts commit 1d2299e68b004182ea6130b088de1f1122b18a49, reversing
changes made to ddc97fbf1bec2b7815c0da7c74f7ecb2f428889b.
* Revert "fix some bug in unittest; try again"
This reverts commit ddc97fbf1bec2b7815c0da7c74f7ecb2f428889b.
* more comprehensive kernel test
* remove shape check in test_specialization
2019-06-06 15:47:55 -04:00
01a4cc5b7b
[Graph] Add API to convert graph to simple graph ( #587 )
...
* to simple
* WIP: multigraph flag
* graph index refactor; pass basic testing
* graph index refactor; pass basic testing
* fix bug in to_simple; pass torch test
* fix mx utest
* fix example
* fix lint
* fix ci
* poke ci
* poke ci
* WIP
* poke ci
* poke ci
* poke ci
* change ci workspace
* poke ci
* poke ci
* poke ci
* poke ci
* delete ci
* use enum for multigraph flag
2019-06-01 23:32:46 -04:00
c64405b1f6
[Docker] update docker image ( #575 )
...
* update docker image
* specify lint version
* rm torch import from unified tests
2019-05-27 17:04:46 -04:00
33b9c38389
[Bugfix] fix bug in pickling ( #456 )
...
* fix bug in pickling
* fix lint
2019-03-18 23:48:20 -04:00
ca2a7e1ca1
[Refactor] Nodeflow, sampling, CAPI ( #430 )
...
* enable cython
* add helper function and data structure for void_p vector return
* move sampler from graph index to contrib.sampling
* WIP
* WIP
* refactor layer sampling
* pass tests
* fix lint
* fix graphsage
* remove comments
* pickle test
* fix comments
* update dev guide for cython build
2019-03-05 14:07:22 -05:00
220a1e68fb
[BUG] Fixing bug in pickling readonly graphs ( #397 )
...
* fixing bug in pickling readonly graphs
* multigraph test coverage
* fixing lint (??????)
* another lint
* is_readonly interface
2019-02-19 00:14:11 -05:00
e19cd62ecd
[Test] Unify tests for different backends ( #333 )
...
* test basics
* batched graph & filter, mxnet filter fix
* frame and function; bugfix
* test graph adj and inc matrices
* fixing start = 0 for mxnet
* test index
* inplace update & line graph
* multi send recv
* more tests
* oops
* more tests
* removing old test files; readonly graphs for mxnet still kept
* modifying test scripts
* adding a placeholder for pytorch to reserve directory
* torch 0.4.1 compat fixes
* moving backend out of compute to avoid nose detection
* tests guide
* mx sparse-to-dense/sparse-to-numpy is buggy
* oops
* contribution guide for unit tests
* printing incmat
* printing dlpack
* small push
* typo
* fixing duplicate entries that causes undefined behavior
* move equal comparison to backend
2019-01-05 23:32:33 -05:00
peizhou001