5e67f0adc2
temporarily removing for 0.9.x due to ux changes
2022-09-14 01:48:14 +00:00
ab0af8146f
Clarify the message name, which is 'm'. ( #4462 )
...
Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal >
Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com >
2022-08-30 13:34:54 +08:00
ea6195c253
[Doc] fix print issue in tutorial ( #4459 )
2022-08-24 13:34:57 +08:00
47993776df
[Feature] Rework Dataloader cpu affinitization as helper method ( #4126 )
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* Add helper method for temporary affinitization of compute threads
* Rework DL affinitization as single helper
* Add example usage in benchmarks
* Fix python linter warnings
* Fix affinity helper params
* Use NUMA node 0 cores only by default
* Fix benchmarks
* Fix lint errors
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2022-08-18 22:34:12 +08:00
4d3c01d671
[Bug Fix] Fix the case when reverse_edge is False for citation graphs ( #3840 )
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* Update citation_graph.py
* Update
* Update
* Update
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2022-06-22 23:52:02 +08:00
4a9be030df
[Doc] Add distributed link prediction tutorial ( #3993 )
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* add dist tutorial
* add predictor in dist prediction
* refine after rendering
* change links
* Update 2_link_prediction.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2022-06-17 18:51:44 +08:00
85c2ff7131
[Doc] Update link to correct destination. ( #3966 )
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* Update link to correct destination.
* Update 4_rgcn.py
* Update 4_rgcn.py
* Update tutorials/models/1_gnn/4_rgcn.py
* Update tutorials/models/1_gnn/4_rgcn.py
* Update tutorials/models/1_gnn/4_rgcn.py
Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com >
2022-06-07 09:56:34 +08:00
7d4160869c
[Bug] Fix multiple issues in distributed multi-GPU GraphSAGE example ( #3870 )
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* fix distributed multi-GPU example device
* try Join
* update version requirement in README
* use model.join
* fix docs
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2022-03-25 22:04:02 +08:00
172949d429
[Example] Fix multi-GPU RGCN example ( #3871 )
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* fix multi-gpu rgcn example
* remove dgl.multiprocessing in turorials
* add a comment
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2022-03-23 09:28:36 -07:00
62e23bd5b1
[Bugs] Fix distributed example error and import error ( #3783 )
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* fix
* raise an error
* fix docserver crash
2022-02-28 14:58:50 +08:00
d41d07d0f6
[Doc and bugfix] Add docs and user guide and update tutorial for sampling pipeline ( #3774 )
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* huuuuge update
* remove
* lint
* lint
* fix
* what happened to nccl
* update multi-gpu unsupervised graphsage example
* replace most of the dgl.mp.process with torch.mp.spawn
* update if condition for use_uva case
* update user guide
* address comments
* incorporating suggestions from @jermainewang
* oops
* fix tutorial to pass CI
* oops
* fix again
Co-authored-by: Xin Yao <xiny@nvidia.com >
2022-02-28 02:21:51 +08:00
6ce3c178b0
fix typo
2022-02-17 02:11:16 +00:00
6106a99d0a
refine
2022-02-17 02:00:10 +00:00
1722935223
add link for blitz
2022-02-17 00:52:20 +00:00
701b4fccc2
[Sampling] New sampling pipeline plus asynchronous prefetching ( #3665 )
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* initial update
* more
* more
* multi-gpu example
* cluster gcn, finalize homogeneous
* more explanation
* fix
* bunch of fixes
* fix
* RGAT example and more fixes
* shadow-gnn sampler and some changes in unit test
* fix
* wth
* more fixes
* remove shadow+node/edge dataloader tests for possible ux changes
* lints
* add legacy dataloading import just in case
* fix
* update pylint for f-strings
* fix
* lint
* lint
* lint again
* cherry-picking commit fa9f494
* oops
* fix
* add sample_neighbors in dist_graph
* fix
* lint
* fix
* fix
* fix
* fix tutorial
* fix
* fix
* fix
* fix warning
* remove debug
* add get_foo_storage apis
* lint
2022-01-30 16:13:00 +08:00
4bb94b1559
[DOC] Fix typo in CPU best practices section ( #3587 )
2021-12-17 15:57:23 +08:00
f7360c3c89
fix link prediction ( #3485 )
2021-11-09 23:57:27 +08:00
c5ae54bfe6
[Doc] Evaluation Tutorial for Link Prediction ( #3463 )
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* link prediction tutorial
* add performance tip
* Update L2_large_link_prediction.py
2021-11-05 13:09:56 +08:00
a47ab71d44
[DOCS] Add training on CPU sections to docs ( #3398 )
2021-10-14 14:53:16 +08:00
4ef1c86b64
[Doc] Update 4_rgcn.py ( #3261 )
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There is some misleading text.
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-08-25 15:56:29 +08:00
8b5f4f5b1c
Fix typos ( #3214 )
2021-08-03 17:39:45 +08:00
7e923180c1
[Doc] Add thumbnails to multi-GPU tutorials ( #3141 )
2021-07-16 14:27:43 +08:00
3f6f694159
[Bug fix] Various fix from bug bash ( #3133 )
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* Update
* Update
* Update dependencies
* Update
* Update
* Fix ogbn-products gat
* Update
* Update
* Reformat
* Fix typo in node2vec_random_walk
* Specify file encoding
* Working for 6.7
* Update
* Fix subgraph
* Fix doc for sample_neighbors_biased
* Fix hyperlink
* Add example for udf cross reducer
* Fix
* Add example for slice_batch
* Replace dgl.bipartite
* Fix GATConv
* Fix math rendering
* Fix doc
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-17.us-west-2.compute.internal >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-22-156.us-west-2.compute.internal >
2021-07-15 09:17:15 +08:00
ced0e443c2
[Doc] Add user guide for GPU-based sampling ( #3070 )
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* add user guide for gpu sampling
* Update minibatch-gpu-sampling.rst
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-07-05 12:07:43 +08:00
66ad774f9e
[Tutorial] update typo in line 175 ( #3092 )
2021-07-03 18:14:30 +08:00
e57c6e3506
[Fix] Fix lint resource usage & Fix Docs ( #3032 )
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* fix
* remove nvidiasmi
* fix
* fix docs
* fix
* fix
2021-06-18 18:33:52 +08:00
a7fe461c1c
[Doc] Single-machine Multi-GPU node classification tutorial ( #2976 )
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* multi-GPU node classification tutorial
* Update 2_node_classification.py
* fixes
* elaborate a bit more
* address comments
* address comments
2021-06-08 10:28:02 +08:00
e2a28a6c8e
[Doc] Revised Two Issues in Message Passing Tutorial ( #2983 )
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* [Doc] modify the dimension of weight to Numpy broadcasting rule
* [Doc] modify the user defined reduce function
Co-authored-by: zhjwy9343 <6593865@qq.com >
2021-06-05 18:54:31 +08:00
b1628f2398
[Tutorial] Distributed node classification. ( #2969 )
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* add init version.
* fix build.
* fix format.
* fix.
* fix.
* fix format.
* update README.
* avoid running CI on distributed training tutorials.
* Update tutorials/dist/1_node_classification.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
* fix.
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2021-06-04 21:50:16 +08:00
0437b16497
[Doc] Fix a typo in the tutorial for Neighbor Sampling ( #2935 )
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Fix a typo in the tutorial for "Introduction of Neighbor Sampling for GNN Training".
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2021-06-01 13:59:22 +08:00
09642d7c21
[Tutorial] Single Machine Multi-GPU Minibatch Graph Classification ( #2940 )
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* Update
* Update
* Update tutorials/multi/1_graph_classification.py
Co-authored-by: Tong He <hetong007@gmail.com >
* Update
* Update
* Update
Co-authored-by: Ubuntu <ubuntu@ip-172-31-4-21.us-west-2.compute.internal >
Co-authored-by: Tong He <hetong007@gmail.com >
2021-05-31 18:36:34 +08:00
c46602d7d8
[Doc] Fix a typo in the tutorial for link prediction ( #2928 )
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Fix a typo in the tutorial for "Link Prediction using Graph Neural Networks".
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-05-23 22:43:45 +08:00
103444c58f
Remove __len__ method from DGLGraph ( #2902 )
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* Update heterograph.py
* remove unit tests
* replace tutorial
2021-05-11 14:06:18 +08:00
337b155970
[Doc] fix tutorial - blitz 4 link prediction ( #2726 )
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The number of edges should be same as posive eids.
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-03-18 14:36:58 +08:00
99751d4960
[Doc] Rename block to message flow graph ( #2702 )
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* rename block to mfg
* revert
* rename
2021-02-25 18:26:19 +08:00
71d53d9eef
add thumbnails for tutorials ( #2695 )
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Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-02-23 20:33:35 +08:00
da2f690a5a
[Doc] Clarify link prediction tutorial ( #2673 )
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* link prediction clarification
* fix
2021-02-23 19:41:54 +08:00
8a07ab7737
[Doc] Tutorials re-organization ( #2683 )
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* reorg
* change titles
* rm some stale API doc; minor fix
* fix docs
* add warning
* rm new-tutorial run in ci
* lint
2021-02-20 17:42:45 +08:00
9e04a52abd
[Doc] Reorganize tutorial ( #2678 )
2021-02-19 13:49:13 +08:00
a9f8f2589c
[Doc] Update GraphDataLoader in our docs ( #2504 )
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* update graphdataloader in docs
* fix
* update examples
* fix sagpool
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2021-01-11 13:11:19 +08:00
492ad9be81
[Fix] Avoid Overloading Nonzero for PyTorch Backend ( #2434 )
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* Update gatedgraphconv.py
* Update entity_classify.py
* Update data-process.rst
* Update reading_data.py
* Update data-process.rst
* Update utils.py
* Update knowledge_graph.py
* Update entity_classify.py
* Update rdf.py
* Update entity_classify_mb.py
* Update test_classify.py
* Update tensor.py
* Update sparse.py
* Update entity_classify_mp.py
* Update 6_line_graph.py
2020-12-20 13:12:17 +08:00
95dc971b7d
[Doc] Some functions used in the tutorial are deprecated ( #2398 )
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* Some functions used in the tutorial are deprecated
I'm receiving register_message_func and register_reduce_func are deprecated error. I have updated the code such that message and reduce functions are passed to g.send and g.recv
* Update 3_pagerank.py.bak
Co-authored-by: Zihao Ye <expye@outlook.com >
2020-12-09 13:11:10 +08:00
edb978772c
[Doc, UG, Tutorial] Misc Fix ( #2376 )
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* Update
* Update
* Update
* Update
* Update
2020-11-30 13:40:10 +08:00
4125f63e72
Update docs ( #2123 )
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* Remove SSE
* Update env_var.rst
2020-08-28 20:35:36 +08:00
ef78d675e9
Fix docs ( #2073 )
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* remove mxnet tutorial
* remove sse
* fix docs
2020-08-20 15:37:50 +08:00
100d932865
Update ( #2062 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal >
2020-08-19 17:42:48 +08:00
be444e52d9
[Doc/Feature] Refactor, doc update and behavior fix for graphs ( #1983 )
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* Update graph
* Fix for dgl.graph
* from_scipy
* Replace canonical_etypes with relations
* from_networkx
* Update for hetero_from_relations
* Roll back the change of canonical_etypes to relations
* heterograph
* bipartite
* Update doc
* Fix lint
* Fix lint
* Fix test cases
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Fix test
* Fix
* Update
* Use DGLError
* Update
* Update
* Update
* Update
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Fix
* Fix
* Update
* Update
* Update
* Update
* Update
* Update
* rewrite sanity checks
* delete unnecessary checks
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Fix
* Update
* Update
* Update
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Fix
* Update
* Fix
* Update
* Fix
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
Co-authored-by: Quan Gan <coin2028@hotmail.com >
2020-08-18 04:26:29 +08:00
001d793711
[Dataset] SSTDataset ( #1918 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* SSTDataset
* Update tree.py
2020-08-03 19:15:28 +08:00
68a978d4de
[Model] Fixes JTNN for 0.5 ( #1879 )
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* jtnn and fixes
* make metagraph a method
* fix test
* fix
2020-07-30 13:36:08 +08:00
44089c8b4d
[Refactor][Graph] Merge DGLGraph and DGLHeteroGraph ( #1862 )
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* Merge
* [Graph][CUDA] Graph on GPU and many refactoring (#1791 )
* change edge_ids behavior and C++ impl
* fix unittests; remove utils.Index in edge_id
* pass mx and th tests
* pass tf test
* add aten::Scatter_
* Add nonzero; impl CSRGetDataAndIndices/CSRSliceMatrix
* CSRGetData and CSRGetDataAndIndices passed tests
* CSRSliceMatrix basic tests
* fix bug in empty slice
* CUDA CSRHasDuplicate
* has_node; has_edge_between
* predecessors, successors
* deprecate send/recv; fix send_and_recv
* deprecate send/recv; fix send_and_recv
* in_edges; out_edges; all_edges; apply_edges
* in deg/out deg
* subgraph/edge_subgraph
* adj
* in_subgraph/out_subgraph
* sample neighbors
* set/get_n/e_repr
* wip: working on refactoring all idtypes
* pass ndata/edata tests on gpu
* fix
* stash
* workaround nonzero issue
* stash
* nx conversion
* test_hetero_basics except update routines
* test_update_routines
* test_hetero_basics for pytorch
* more fixes
* WIP: flatten graph
* wip: flatten
* test_flatten
* test_to_device
* fix bug in to_homo
* fix bug in CSRSliceMatrix
* pass subgraph test
* fix send_and_recv
* fix filter
* test_heterograph
* passed all pytorch tests
* fix mx unittest
* fix pytorch test_nn
* fix all unittests for PyTorch
* passed all mxnet tests
* lint
* fix tf nn test
* pass all tf tests
* lint
* lint
* change deprecation
* try fix compile
* lint
* update METIDS
* fix utest
* fix
* fix utests
* try debug
* revert
* small fix
* fix utests
* upd
* upd
* upd
* fix
* upd
* upd
* upd
* upd
* upd
* trigger
* +1s
* [kernel] Use heterograph index instead of unitgraph index (#1813 )
* upd
* upd
* upd
* fix
* upd
* upd
* upd
* upd
* upd
* trigger
* +1s
* [Graph] Mutation for Heterograph (#1818 )
* mutation add_nodes and add_edges
* Add support for remove_edges, remove_nodes, add_selfloop, remove_selfloop
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
* upd
* upd
* upd
* fix
* [Transfom] Mutable transform (#1833 )
* add nodesy
* All three
* Fix
* lint
* Add some test case
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* fix
* triger
* Fix
* fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
* [Graph] Migrate Batch & Readout module to heterograph (#1836 )
* dgl.batch
* unbatch
* fix to device
* reduce readout; segment reduce
* change batch_num_nodes|edges to function
* reduce readout/ softmax
* broadcast
* topk
* fix
* fix tf and mx
* fix some ci
* fix batch but unbatch differently
* new checkk
* upd
* upd
* upd
* idtype behavior; code reorg
* idtype behavior; code reorg
* wip: test_basics
* pass test_basics
* WIP: from nx/ to nx
* missing files
* upd
* pass test_basics:test_nx_conversion
* Fix test
* Fix inplace update
* WIP: fixing tests
* upd
* pass test_transform cpu
* pass gpu test_transform
* pass test_batched_graph
* GPU graph auto cast to int32
* missing file
* stash
* WIP: rgcn-hetero
* Fix two datasety
* upd
* weird
* Fix capsuley
* fuck you
* fuck matthias
* Fix dgmg
* fix bug in block degrees; pass rgcn-hetero
* rgcn
* gat and diffpool fix
also fix ppi and tu dataset
* Tree LSTM
* pointcloud
* rrn; wip: sgc
* resolve conflicts
* upd
* sgc and reddit dataset
* upd
* Fix deepwalk, gindt and gcn
* fix datasets and sign
* optimization
* optimization
* upd
* upd
* Fix GIN
* fix bug in add_nodes add_edges; tagcn
* adaptive sampling and gcmc
* upd
* upd
* fix geometric
* fix
* metapath2vec
* fix agnn
* fix pickling problem of block
* fix utests
* miss file
* linegraph
* upd
* upd
* upd
* graphsage
* stgcn_wave
* fix hgt
* on unittests
* Fix transformer
* Fix HAN
* passed pytorch unittests
* lint
* fix
* Fix cluster gcn
* cluster-gcn is ready
* on fixing block related codes
* 2nd order derivative
* Revert "2nd order derivative"
This reverts commit 523bf6c249bee61b51b1ad1babf42aad4167f206.
* passed torch utests again
* fix all mxnet unittests
* delete some useless tests
* pass all tf cpu tests
* disable
* disable distributed unittest
* fix
* fix
* lint
* fix
* fix
* fix script
* fix tutorial
* fix apply edges bug
* fix 2 basics
* fix tutorial
Co-authored-by: yzh119 <expye@outlook.com >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-7-42.us-west-2.compute.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal >
2020-07-28 14:30:41 +08:00
Quan (Andy) Gan