62af41c245
[Bug] Enable turn on/off libxsmm at runtime ( #4455 )
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* enable turn on/off libxsmm at runtime by adding a global config and related API
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-194.ap-northeast-1.compute.internal >
2022-09-05 17:38:34 +08:00
79b0a50afc
[Unittest][Fix] Several unit tests fixes for Ampere+ and PyTorch 1.12+ ( #4213 )
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* Fix test_csrmm for tensor core
* unset allow tf32 flag
* update test unified tensor
* skip fp16 for CPU
2022-07-14 19:59:57 +08:00
eabcc58e41
[Bug][Feature] Added cublasGemm<__half> specialization ( #3988 ) ( #4029 )
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* * Added specialization of cublasGemm function for `__half` type, to try to address https://github.com/dmlc/dgl/issues/3988
* * Added USE_FP16 guard
* * Added test cases to test_segment_mm, to test newly-added FP16 specialization of cublasGemm
* * Replaced for loop in test_segment_mm with pytest.mark.parametrize, as recommended
Co-authored-by: Xin Yao <xiny@nvidia.com >
2022-06-07 16:00:02 +08:00
1425150459
Fix test naming ( #4023 )
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Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-05-23 17:21:06 +08:00
0227ddfb66
[NN] Rework RelGraphConv and HGTConv ( #3742 )
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* WIP: TypedLinear and new RelGraphConv
* wip
* further simplify RGCN
* a bunch of tweak for performance; add basic cpu support
* update on segmm
* wip: segment.cu
* new backward kernel works
* fix a bunch of bugs in kernel; leave idx_a for future
* add nn test for typed_linear
* rgcn nn test
* bugfix in corner case; update RGCN README
* doc
* fix cpp lint
* fix lint
* fix ut
* wip: hgtconv; presorted flag for rgcn
* hgt code and ut; WIP: some fix on reorder graph
* better typed linear init
* fix ut
* fix lint; add docstring
2022-02-23 12:10:20 +08:00
6c81634b29
[Bugfix] Fixes wrong output in multi_update_all for reduce op max/min (Issue#3564)) ( #3581 )
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* fixed bug
* added in test cases
* unittest resolved
* bugfix
Co-authored-by: Israt Nisa <nisisrat@amazon.com >
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2021-12-17 08:54:15 +08:00
ab2bd1f13d
[Feature] Add cuda support for Sparse Matrix multiplication, summation and masking ( #2782 )
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* init cuda support
* cuSPARSE err
* passed unittest for csr_mm/SpGEMM. int64 not supported
* Debugging cuSPARSE error 3
* csrgeam only supports int32?
* disabling int64 for cuda
* refactor and add CSRMask
* lint
* oops
* remove todo
* rewrite CSRMask with CSRGetData
* lint
* fix test
* address comments
* lint
* fix
* addresses comments and rename BUG_ON
Co-authored-by: Israt Nisa <nisisrat@amazon.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-30-71.ec2.internal >
Co-authored-by: Quan Gan <coin2028@hotmail.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-04-27 16:06:35 +08:00
fb4a0508c6
[bugfix] Solve the boundary issue in backward function of segment sum ( #2610 )
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* upd
* trigger
* upd
2021-02-03 18:50:07 +08:00
3adbfa1812
[Performance] Use segment operators for graph readout. ( #2361 )
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* upd
* upd
* update
* upd
* upd
* upd
* fix
* lint
* lint
* pylint
* doc
2020-11-23 01:45:33 +08:00
c341520d5b
[bugfix] Fix the behavior of min/max reducer for 1-dim dta. ( #2250 )
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* udp
* add test
* udp
* fix mxnet
2020-09-29 17:27:16 +08:00
be444e52d9
[Doc/Feature] Refactor, doc update and behavior fix for graphs ( #1983 )
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* Update graph
* Fix for dgl.graph
* from_scipy
* Replace canonical_etypes with relations
* from_networkx
* Update for hetero_from_relations
* Roll back the change of canonical_etypes to relations
* heterograph
* bipartite
* Update doc
* Fix lint
* Fix lint
* Fix test cases
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Fix test
* Fix
* Update
* Use DGLError
* Update
* Update
* Update
* Update
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Fix
* Fix
* Update
* Update
* Update
* Update
* Update
* Update
* rewrite sanity checks
* delete unnecessary checks
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Fix
* Update
* Update
* Update
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Fix
* Update
* Fix
* Update
* Fix
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
Co-authored-by: Quan Gan <coin2028@hotmail.com >
2020-08-18 04:26:29 +08:00
6294677f8a
[hotfix] Set reduce results to all zero for nodes with zero in-degrees. ( #2011 )
2020-08-13 01:20:56 +08:00
18bfec24cf
[hotfix] Refactor edge softmax module ( #1967 )
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* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
2020-08-07 23:50:12 +08:00
a28bfa9f5f
[hotfix] Activate kernel unittest for tensorflow ( #1895 )
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* upd
* upd
* upd
* upd
* upd
* trigger
* simplify unittest
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2020-07-31 19:57:53 +08:00
2fa2b4534e
[Feature] Support higher order derivative for message passing. ( #1877 )
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* upd
* fix typo
2020-07-28 23:11:06 +08:00
44089c8b4d
[Refactor][Graph] Merge DGLGraph and DGLHeteroGraph ( #1862 )
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* Merge
* [Graph][CUDA] Graph on GPU and many refactoring (#1791 )
* change edge_ids behavior and C++ impl
* fix unittests; remove utils.Index in edge_id
* pass mx and th tests
* pass tf test
* add aten::Scatter_
* Add nonzero; impl CSRGetDataAndIndices/CSRSliceMatrix
* CSRGetData and CSRGetDataAndIndices passed tests
* CSRSliceMatrix basic tests
* fix bug in empty slice
* CUDA CSRHasDuplicate
* has_node; has_edge_between
* predecessors, successors
* deprecate send/recv; fix send_and_recv
* deprecate send/recv; fix send_and_recv
* in_edges; out_edges; all_edges; apply_edges
* in deg/out deg
* subgraph/edge_subgraph
* adj
* in_subgraph/out_subgraph
* sample neighbors
* set/get_n/e_repr
* wip: working on refactoring all idtypes
* pass ndata/edata tests on gpu
* fix
* stash
* workaround nonzero issue
* stash
* nx conversion
* test_hetero_basics except update routines
* test_update_routines
* test_hetero_basics for pytorch
* more fixes
* WIP: flatten graph
* wip: flatten
* test_flatten
* test_to_device
* fix bug in to_homo
* fix bug in CSRSliceMatrix
* pass subgraph test
* fix send_and_recv
* fix filter
* test_heterograph
* passed all pytorch tests
* fix mx unittest
* fix pytorch test_nn
* fix all unittests for PyTorch
* passed all mxnet tests
* lint
* fix tf nn test
* pass all tf tests
* lint
* lint
* change deprecation
* try fix compile
* lint
* update METIDS
* fix utest
* fix
* fix utests
* try debug
* revert
* small fix
* fix utests
* upd
* upd
* upd
* fix
* upd
* upd
* upd
* upd
* upd
* trigger
* +1s
* [kernel] Use heterograph index instead of unitgraph index (#1813 )
* upd
* upd
* upd
* fix
* upd
* upd
* upd
* upd
* upd
* trigger
* +1s
* [Graph] Mutation for Heterograph (#1818 )
* mutation add_nodes and add_edges
* Add support for remove_edges, remove_nodes, add_selfloop, remove_selfloop
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
* upd
* upd
* upd
* fix
* [Transfom] Mutable transform (#1833 )
* add nodesy
* All three
* Fix
* lint
* Add some test case
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* fix
* triger
* Fix
* fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
* [Graph] Migrate Batch & Readout module to heterograph (#1836 )
* dgl.batch
* unbatch
* fix to device
* reduce readout; segment reduce
* change batch_num_nodes|edges to function
* reduce readout/ softmax
* broadcast
* topk
* fix
* fix tf and mx
* fix some ci
* fix batch but unbatch differently
* new checkk
* upd
* upd
* upd
* idtype behavior; code reorg
* idtype behavior; code reorg
* wip: test_basics
* pass test_basics
* WIP: from nx/ to nx
* missing files
* upd
* pass test_basics:test_nx_conversion
* Fix test
* Fix inplace update
* WIP: fixing tests
* upd
* pass test_transform cpu
* pass gpu test_transform
* pass test_batched_graph
* GPU graph auto cast to int32
* missing file
* stash
* WIP: rgcn-hetero
* Fix two datasety
* upd
* weird
* Fix capsuley
* fuck you
* fuck matthias
* Fix dgmg
* fix bug in block degrees; pass rgcn-hetero
* rgcn
* gat and diffpool fix
also fix ppi and tu dataset
* Tree LSTM
* pointcloud
* rrn; wip: sgc
* resolve conflicts
* upd
* sgc and reddit dataset
* upd
* Fix deepwalk, gindt and gcn
* fix datasets and sign
* optimization
* optimization
* upd
* upd
* Fix GIN
* fix bug in add_nodes add_edges; tagcn
* adaptive sampling and gcmc
* upd
* upd
* fix geometric
* fix
* metapath2vec
* fix agnn
* fix pickling problem of block
* fix utests
* miss file
* linegraph
* upd
* upd
* upd
* graphsage
* stgcn_wave
* fix hgt
* on unittests
* Fix transformer
* Fix HAN
* passed pytorch unittests
* lint
* fix
* Fix cluster gcn
* cluster-gcn is ready
* on fixing block related codes
* 2nd order derivative
* Revert "2nd order derivative"
This reverts commit 523bf6c249bee61b51b1ad1babf42aad4167f206.
* passed torch utests again
* fix all mxnet unittests
* delete some useless tests
* pass all tf cpu tests
* disable
* disable distributed unittest
* fix
* fix
* lint
* fix
* fix
* fix script
* fix tutorial
* fix apply edges bug
* fix 2 basics
* fix tutorial
Co-authored-by: yzh119 <expye@outlook.com >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-7-42.us-west-2.compute.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal >
2020-07-28 14:30:41 +08:00
be53add4d1
relax ( #1802 )
2020-07-14 09:44:42 +08:00
bc209bff94
[bugfix] Fix the deterministic of kernel test and add documentation. ( #1799 )
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* upd
* upd
* upd
* relax
* relax too
* upd
2020-07-14 04:22:31 +08:00
f25b1a064d
[Feature] Autograd of gspmm and gsddmm on PyTorch/MXNet/Tensorflow ( #1680 )
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* init
* reverse(by minjie
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* gpu
* upd
* upd
* upd
* upd
* udp
* upd
* upd
* imidiot
* fix
* upd
* upd
* upd
* udp
* upd
* upd
* fix
* udp
* upd
* upd
* upd
* upd
* upd
* fix
* remove redundency
* upd
* upd
* upd
* cache
* upd
* upd
* upd
* upd
* upd
* udp
* upd
* trigger
* upd
* fix
* upd
* unused import
* upd
* upd
2020-07-13 23:21:22 +08:00
071cba1f2b
[kernel] New SpMM & SDDMM kernel on CPU and CUDA ( #1644 )
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* udp
* simplify
* sddmm dot cpu
* upd
* format
* upd
* compatible with MJ's PR
* lint
* upd
* upd
* upd
* python end
* upd
* upd
* lint
* lint
* upd
* upd
* upd
* upd
* upd
* lint
* fix mxnet
* upd
* lint
* use minjie's ptr
* macro
* upd
* reorg
* lint
* fix corner cases
* upd
* enrich cpu docs
* upd
* upd
* lint
* lint
* pylint
* sx review
* improve docstring
* python doc
* upd
* restructure
* lint
* upd test
* upd
* pylint
* fix corner cases and test
2020-06-22 23:18:32 +08:00
peizhou001