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作者 SHA1 备注 提交日期
Chang Liu 5ba5106aca [Bugfix] Fix the default value of num_bases in RelGraphConv module (#4321) 
* Fix doc and default settings for RelGraphConv

* Add unit test

* Split msg in two lines to pass CI-lint
 2022-08-07 16:33:16 +08:00
Rhett Ying d6957c28ff [BugFix] fix incorrect _bias and bias usage (#4310) 2022-07-30 17:40:54 +08:00
Mufei Li fdbf5a0fda [DGL-Go][Doc] Update DGL-Go version to 0.0.2 and misc fix from bug bash (#4236) 
* Update

* Update

* Update

* Update

Co-authored-by: Ubuntu <ubuntu@ip-172-31-53-142.us-west-2.compute.internal>
Co-authored-by: Xin Yao <xiny@nvidia.com>
 2022-07-14 21:30:38 +08:00
Mufei Li a25a14f2fa [Bug Fix] Fix A Bug Related to GroupRevRes (#4181) 
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Xin Yao <xiny@nvidia.com>
 2022-06-28 21:17:20 +08:00
Riju Mukherjee efd909e62e [NN] Enhance EGATConv branch (#4062) 
* enhance EGATConv| nfeats as tuples

* egatconv modified for bipartite graphs

* modified docstrings

* added/modified unittests for EGATConv

* Update egatconv.py

* rectified lint errors

Co-authored-by: rijulizer <riju.mukherjee@gmail.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2022-06-03 11:53:10 +08:00
rudongyu 3fe5eea791 [NN] Label Propagation & Directional Graph Networks (#4017) 
* add label propagation module

* fix prev bug in example

* add dgn

* fix linting and doc issues

* update label propagation & dgn

* update label propagation & dgn

* update example

* fix unit test

* fix agg heritage issue

* fix agg issue

* fix lint

* fix idx

* fix lp gpu issue

* Update

* Update

Co-authored-by: mufeili <mufeili1996@gmail.com>
 2022-05-20 15:23:19 +08:00
Mufei Li 248bece633 [NN] GINEConv (#3934) 
* Update

* Update

* Update

* Update

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2022-04-25 14:41:05 +08:00
Mufei Li 43b9d40e5e [Doc] Fix Doc for EGNNConv (#3919) 
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2022-04-11 11:01:15 +08:00
rudongyu dc5035b1f3 [NN] Add EGNN & PNA (#3901) 
* add EGNN & PNA

* fix egnn issues

* fix pna issues

* update pna conv

* add doc strings

* update pnaconv

* fix unused args issue

* fix moment aggregation issue

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2022-04-07 17:44:57 +08:00
Mufei Li 8005978e1e [NN] Grouped reversible residual connections for GNNs (#3842) 
* Update

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update
 2022-03-23 16:58:39 +08:00
Mufei Li 6d9433b04f [Transform] [Doc] Rename transform to transforms and update doc (#3765) 
* Update

* Update

* Update

* Fix

* Update

* Update

* Update

* Fix
 2022-02-24 21:28:15 +08:00
Minjie Wang 0227ddfb66 [NN] Rework RelGraphConv and HGTConv (#3742) 
* WIP: TypedLinear and new RelGraphConv

* wip

* further simplify RGCN

* a bunch of tweak for performance; add basic cpu support

* update on segmm

* wip: segment.cu

* new backward kernel works

* fix a bunch of bugs in kernel; leave idx_a for future

* add nn test for typed_linear

* rgcn nn test

* bugfix in corner case; update RGCN README

* doc

* fix cpp lint

* fix lint

* fix ut

* wip: hgtconv; presorted flag for rgcn

* hgt code and ut; WIP: some fix on reorder graph

* better typed linear init

* fix ut

* fix lint; add docstring
 2022-02-23 12:10:20 +08:00
Rhett Ying 80fb4dbe26 [Doc] fix examples (#3747) 2022-02-17 18:46:13 +08:00
Rhett Ying 22272de652 [Fix] normalize by dst if edge_weight is None (#3744) 
* [Fix] normalize by dst if edge_weight is None

* [Doc] fix math formula display issue
 2022-02-17 13:51:37 +08:00
Rhett Ying 4f7ad2582c [doc] fix error in example (#3736) 2022-02-15 18:44:15 +08:00
KoyamaSohei fa343873a8 Fix docs on GraphSAGE normalization (#3711) 
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2022-02-07 17:56:04 +08:00
Jeremy Goh 25c9221b83 Add check for aggregator_type enum in SAGEConv init (#3691) 
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2022-02-03 12:02:35 +08:00
Mufei Li 05c6c3c5ec [NN] Fix GINConv (#3692) 
* Update

* Update

* Fix

* Update

* Update

* Update

* Update

* Fix

* Update

* Update

* Update

* Update

* Fix lint

* lint

* Update

* Update

* lint fix

* Fix CI

* Fix

* Fix CI

* Update

* Fix

* Update

* Update

* Update ginconv.py

* Update test_nn.py

Co-authored-by: Ubuntu <ubuntu@ip-172-31-31-136.us-west-2.compute.internal>
 2022-01-27 12:46:29 +08:00
Jeremy Goh 8f5baa15e4 [Doc] Fix spelling, references and update info on building docs (#3682) 
* Fix ref to message-passing guide

* Fix pygments and spacing

* Update build documentation steps in README.md

* Use links

* Adjust parameters in SAGEConv docstring in same order as init

* Fix spelling error

* Change doc link
 2022-01-25 17:22:18 +08:00
RONANKI SWAMY SRIHARSHA 9c1065479e [NN] Added activation function as an optional parameter to GINConv (#3565) 
* Added activation function as an optional parameter

* lint fixes

* Modified the input parameters in tandem with other classes

* lint corrections

* corrected tests

* Reverting back to the old interface

* lint corrections

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2021-12-29 14:01:01 +08:00
schmidt-ju 5f4c879399 Fix output dimensions of residual connection for GATv2Conv (#3584) 
Number of heads needs to be considered for the transformation of the destination features. Otherwise this will crash if residual==True.
 2021-12-13 12:41:30 +08:00
Yongyi c3103b62bf [BugFix] Fix a bug in TWIRLS, add unittest (#3573) 
* Fix a bug in TWIRLS, add unittest

* reformatting the code

* modify unittest for TWIRLS

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2021-12-07 00:23:09 +08:00
Krzysztof Sadowski 8dbf3a4716 [NN] Fix GATv2Conv residual for mini-batch (#3535) 2021-11-22 23:44:34 +08:00
VoVAllen ea8b5d7933 fix #2278 2021-11-22 10:53:27 +00:00
Jinjing Zhou 7b4b8129e3 Add edge_weight parameters to nn modules (#3455) 
* add

* fix optional docing

* fix

* lint

* add normalized by edge weight

* add test

* fix

* lint

* fix docs

* fix

* fix docs
 2021-11-21 14:59:46 +08:00
Mufei Li 55f2e87292 [Doc] Fix Doc for GATv2Conv (#3491) 
* Fix

* CI

Co-authored-by: Ubuntu <ubuntu@ip-172-31-31-136.us-west-2.compute.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2021-11-10 17:28:18 +08:00
Shaked Brody db78fac5df Update gatv2conv.py doc (#3486) 2021-11-09 11:08:04 +08:00
Shaked Brody e2f33fd5cc [NN][Model] GATv2 (#3473) 
* [Model][Core] GATv2

* lint

* gatv2conv.py

* lint

* lint

* style and docs

* lint

* gatv2conv fix

Co-authored-by: Shaked Brody shakedbr@campus.technion.ac.il <shakedbr@tangerine.cslcs.technion.ac.il>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2021-11-03 21:55:56 +08:00
Kamil Kamiński 51c6509704 [NN] Add EGATConv nn.module (#3425) 
* added nn pytorch egatconv

* aligned with test build

* aligned with test build

* fixed wihite spaces

* fixed wihite spaces

* fixed wihite spaces

* added missing egatconv in imports

* added indentation in forward

* GATConv based implementation

* removed **kw_args

* added dgl relative imports

* PR corrections

* added DGL Error to EGATConv imports

* Update test_nn.py

Co-authored-by: Argusmocny <k.kaminski@cent.uw.edu.pl>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2021-10-28 00:38:08 +08:00
Rhett Ying 9cc85aed62 [Doc] fix formula in RelGraphConv (#3285) 
* [Doc] fix formula in RelGraphConv

* refine descriptions
 2021-08-25 17:59:17 +08:00
Quan (Andy) Gan b4cd60a952 fix relgraphconv bug (#3256) 2021-08-23 17:29:14 +08:00
Rhett Ying 8341244a2d [Doc] fix formula display issue in EdgeWeightNorm (#3275) 
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2021-08-21 21:59:26 +08:00
Chen Kai 75fca8e4e8 [bugfix] fix the bug of DotGatConv when compute the edge_softmax (#3272) 
Co-authored-by: Zihao Ye <expye@outlook.com>
 2021-08-20 09:19:00 +08:00
Mufei Li 3f6f694159 [Bug fix] Various fix from bug bash (#3133) 
* Update

* Update

* Update dependencies

* Update

* Update

* Fix ogbn-products gat

* Update

* Update

* Reformat

* Fix typo in node2vec_random_walk

* Specify file encoding

* Working for 6.7

* Update

* Fix subgraph

* Fix doc for sample_neighbors_biased

* Fix hyperlink

* Add example for udf cross reducer

* Fix

* Add example for slice_batch

* Replace dgl.bipartite

* Fix GATConv

* Fix math rendering

* Fix doc

Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-17.us-west-2.compute.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-22-156.us-west-2.compute.internal>
 2021-07-15 09:17:15 +08:00
Quan (Andy) Gan b576e617ad [Feature] Add left normalizer for GCN (#3114) 
* add left normalizer for gcn

* fix

* fixes and some bug stuff
 2021-07-13 12:49:35 +08:00
Quan (Andy) Gan 5798ee8d98 [Performance] Add a warning for ChebConv (#3099) 
* add a warning for chebconv

* fix and docstrings

* update bgnn

* fix

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2021-07-09 14:49:15 +08:00
WangYQ 0851b4df5d Sageconv doc (#3093) 
* revise the doc of forward function in SAGEConv

* remove trailing space
 2021-07-05 09:25:56 +08:00
Tomohiro Endo 5961c14026 [Doc] EdgeWeightNorm Fix doc (#3051) 
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2021-06-23 15:49:31 +08:00
Mufei Li ff519f98c3 [API] Standardize Subgraph APIs (#2929) 
* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Update

* Fix subgraph tests

* Capture stdout for distributed test

* Capture stdout for distributed test

* Update

* Update

* Update

* Update subgraph.cc

Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-17.us-west-2.compute.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2021-06-21 19:53:37 +08:00
Jinjing Zhou 2570d412f9 [NN] Add fast path for GateGCNConv when it has only one edge type (#2994) 
* fix gatedgcn

* fix lint
 2021-06-12 01:13:18 +08:00
Quan (Andy) Gan fcfe52aee5 fix residual (#2962) 2021-06-01 13:50:39 +08:00
V.E 50492d56a8 Fixing issue #2921 (#2922) 
* fixing #2921

* fixing #2921
 2021-05-18 09:54:38 +08:00
kyawlinoo b03077b60d [NN] GCNII model added <https://arxiv.org/pdf/2007.02133.pdf> (#2874) 
* Auto stash before rebase of "origin/pytorch-nn-working"

GCNII model added

* linting

* linting

* lint

* Frequency Adaptive gcn init comit

* Revert "Frequency Adaptive gcn init comit"

This reverts commit 86a80586ac0040497c1edfa0e80df719992dcc4a.

* Update python/dgl/nn/pytorch/conv/gcn2conv.py

modified docstring

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* added beta formula and changed param name

* fix docstring

* lint

* white space lint

* update docstring

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* docstring formula update

* added gcn2

* added GCN2Conv

* Update nn.pytorch.rst

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2021-05-17 10:25:59 +08:00
Quan (Andy) Gan 9983107384 [Feature] Support multidimensional features for GAT (#2912) 
* support multidimensional features for GAT

* docstring

* lint

* fix
 2021-05-15 02:47:23 +08:00
YYY c18f957d0e [Model] add implementation of twirls (#2770) 
* add implementation of twirls

* format the code

* fix some format error, and ignore others

* fix format errors

* fix format errors

* expose unfolding & attention

* Update nn.pytorch.rst

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2021-05-11 09:58:48 +08:00
Mufei Li e18c2ab408 [NN] Fix GATConv for Broadcasting with Residual Connections (#2867) 
* Update

* update

Co-authored-by: Ubuntu <ubuntu@ip-172-31-59-108.us-west-2.compute.internal>
 2021-04-27 14:36:06 +08:00
Quan (Andy) Gan cfe6e70b7a RGAT baseline for OGB-LSC node classification challenge (#2810) 
* RGAT baseline

* update links (data.dgl.ai hasn't refreshed yet)

* nvm still use dgl.ai domain

* descriptions

* actually it took less

* address comments

* stop worrying about cache

* update links

* oops
 2021-04-05 18:21:18 +08:00
Zihao Ye edf644633d [performance] Optimize the association order of AXW in GraphSAGE. (#2747) 
* upd

* lint

* upd

* upd

* compatibility

* upd

* upd

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2021-03-19 01:41:33 +08:00
鄢振宇Michael Yan 3c8382f6b6 Fix typos in zero-in-degree (#2750) 2021-03-14 19:13:59 +08:00
Mufei Li 7380d61eb9 [NN] Support Unidirectional Bipartite Graphs in CFConv (#2674) 
* Update

* update

* Update

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2021-03-03 16:35:07 +08:00