bef993076e
[Bugfix] Fix PinSAGE Benchmark ( #4058 )
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* Update
* Update
* Update dgl.data.rst
* CI
2022-05-28 00:31:57 +08:00
d1124b7bef
[Example][BugFix] Fix Lightning GraphSAGE examples (dmlc#4046) ( #4053 )
2022-05-26 12:40:40 +08:00
744896e2d8
fix examples ( #4016 )
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Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-05-23 23:41:12 +08:00
bdaccc8270
[Bug Fix] Fix KeyError for rgcn-hetero Entity Classification w/ minibatch training ( #4022 )
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* Update model.py
* Update entity_classify_mb.py
2022-05-23 20:25:01 +08:00
3fe5eea791
[NN] Label Propagation & Directional Graph Networks ( #4017 )
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* add label propagation module
* fix prev bug in example
* add dgn
* fix linting and doc issues
* update label propagation & dgn
* update label propagation & dgn
* update example
* fix unit test
* fix agg heritage issue
* fix agg issue
* fix lint
* fix idx
* fix lp gpu issue
* Update
* Update
Co-authored-by: mufeili <mufeili1996@gmail.com >
2022-05-20 15:23:19 +08:00
6de7d5faa7
[Bugfix] Fix conditional judgment of cuda ( #4026 ) ( #4027 )
2022-05-20 11:01:03 +08:00
cba465f2c8
[BugFix] hetero ogbn-mag full neighbor inference. ( #4010 )
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* fix hetero ogbn-mag full neighbor inference.
* fix hetero
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-05-18 16:46:55 +08:00
74f0140533
[Example] Rename NodeDataLoader to DataLoader in GraphSAGE example ( #3972 )
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* rename
* Update node_classification.py
* more fixes...
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2022-05-11 09:10:54 +08:00
d4d4fa1eaf
Update pinsage readme: torchtext>=0.9.0 ( #3974 )
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Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com >
2022-05-10 12:41:01 +08:00
ae7e3db631
fix bugs in gat training script ( #3505 )
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Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Zihao Ye <expye@outlook.com >
2022-04-29 17:53:00 +08:00
37be02a486
[Feature] enable socket net_type for rpc ( #3951 )
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* [Feature] enable socket net_type for rpc
* fix lint
* fix lint
* fix build issue on windows
* fix test failure on windows
* fix test failure
* fix cpp unit test failure
* net_type blocking max_try_times
* fix other comments
* fix lint
* fix comment
* fix lint
* fix cpp
2022-04-28 00:10:06 +08:00
306e0a46e1
[Bug] Fixed optimizer definition in gnn_explainer ( #3944 ) ( #3948 )
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Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-04-25 16:39:44 +08:00
dc1c0ac28a
[Example][Bug] Fix GAT example ( #3947 )
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* fix
* oops
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-04-22 23:44:45 +08:00
f5bba284f8
[Example] Add EGES example ( #3756 )
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* add eges example
* remove csv files and add data link
* Update README.md
* Update main.py
* Update model.py
* Update sampler.py
* Update utils.py
* Update model.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2022-04-14 16:23:08 +08:00
a0bf5daa65
fix ( #3903 )
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Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2022-04-13 12:28:19 +08:00
c380f0b5fa
Update gatv2.py ( #3921 )
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Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2022-04-13 09:47:52 +08:00
e06e63d5d5
[Feature] Enable UVA sampling with CPU indices ( #3892 )
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* enable UVA sampling with CPU indices
* add docs
* add more docs
* lint
* fix
* fix
* better error message
* use mp.Barrier instead of queues
* revert
* revert
* oops
* revert dgl.multiprocessing.spawn
* Update pytorch.py
2022-04-12 20:56:51 +08:00
0d878ff8ef
[Example] Cleaned GraphSAGE node classification example with PyTorch Lightning ( #3863 )
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* cleaned pl node classification example
* conform to PL's method of updating the dataloader
* update
* lint
* fix test
* fix
2022-04-12 17:26:23 +08:00
f931c6ba54
[Examples] Add pure gpu mode in the GraphSAGE node classification and link prediction ( #3856 )
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Signed-off-by: Serge Panev <spanev@nvidia.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2022-04-12 13:03:03 +08:00
01e50626d3
[Example] Add TorchMetrics in README ( #3913 )
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* Update README.md
* Update README.md
* Update README.md
Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com >
2022-04-09 23:25:51 +08:00
27a6eb564c
[Examples] Update graphsage multi-gpu example to use mutliple GPUs for validation and testing. ( #3827 )
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* Update graphsage multi-gpu example to use mutliple GPUs for validation and
testing.
* Remove argmax
* Fix rebase error
* Add more documentation to example and simplify
* Switch to name shared memory
* Add comment about how training is distributed
* Restore iteration count
* fix munmap error reporting for better error messages
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2022-04-06 00:32:37 +08:00
9fee20b91d
[Sampler] [Example] SAINTSampler and Simplify GraphSAINT Example ( #3879 )
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* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Fix
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2022-03-30 13:51:37 +08:00
0dd500e386
[BugFix] Remove redundant reference of networkx package in pagerank.py ( #3888 )
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Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2022-03-30 11:54:03 +08:00
6752bd4515
[Example] layers number fix in GAT example ( #3872 )
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* gat layers fix
* minor bug
Co-authored-by: decoherencer <decoherencer@users.noreply.github.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2022-03-26 15:02:16 +08:00
7d4160869c
[Bug] Fix multiple issues in distributed multi-GPU GraphSAGE example ( #3870 )
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* fix distributed multi-GPU example device
* try Join
* update version requirement in README
* use model.join
* fix docs
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2022-03-25 22:04:02 +08:00
172949d429
[Example] Fix multi-GPU RGCN example ( #3871 )
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* fix multi-gpu rgcn example
* remove dgl.multiprocessing in turorials
* add a comment
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2022-03-23 09:28:36 -07:00
57d2f31f20
[Examples] Add pure gpu example of graphsage ( #3796 )
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* Add pure_gpu example of graphsage
* move to advanced directory
Co-authored-by: Quan Gan <coin2028@hotmail.com >
2022-03-10 17:33:23 -08:00
f908f35c38
[Example]Add P-GNN example ( #3823 )
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* [Model]P-GNN
* updata
* [Example]P-GNN
* Update README.md
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-03-10 17:39:32 +08:00
44638b9336
fix ddp dataloader in heterogeneous cases ( #3801 )
2022-03-07 16:56:43 +08:00
0528e90d7d
[Examples] fix path for load_graph ( #3797 )
2022-03-03 15:36:48 +08:00
0ec439247a
[Examples] re-locate load_graph for share ( #3784 )
2022-03-01 09:32:53 +08:00
861666fa55
[Bugfix] Fix RGCN Example ( #3785 )
2022-02-28 18:55:06 +08:00
d41d07d0f6
[Doc and bugfix] Add docs and user guide and update tutorial for sampling pipeline ( #3774 )
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* huuuuge update
* remove
* lint
* lint
* fix
* what happened to nccl
* update multi-gpu unsupervised graphsage example
* replace most of the dgl.mp.process with torch.mp.spawn
* update if condition for use_uva case
* update user guide
* address comments
* incorporating suggestions from @jermainewang
* oops
* fix tutorial to pass CI
* oops
* fix again
Co-authored-by: Xin Yao <xiny@nvidia.com >
2022-02-28 02:21:51 +08:00
6d9433b04f
[Transform] [Doc] Rename transform to transforms and update doc ( #3765 )
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* Update
* Update
* Update
* Fix
* Update
* Update
* Update
* Fix
2022-02-24 21:28:15 +08:00
0227ddfb66
[NN] Rework RelGraphConv and HGTConv ( #3742 )
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* WIP: TypedLinear and new RelGraphConv
* wip
* further simplify RGCN
* a bunch of tweak for performance; add basic cpu support
* update on segmm
* wip: segment.cu
* new backward kernel works
* fix a bunch of bugs in kernel; leave idx_a for future
* add nn test for typed_linear
* rgcn nn test
* bugfix in corner case; update RGCN README
* doc
* fix cpp lint
* fix lint
* fix ut
* wip: hgtconv; presorted flag for rgcn
* hgt code and ut; WIP: some fix on reorder graph
* better typed linear init
* fix ut
* fix lint; add docstring
2022-02-23 12:10:20 +08:00
4f00d5ac6f
[Bugfix] Fix graph being duplicated in multi-GPU and CPU dataloader workers ( #3760 )
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* fix shared memory issue
* oops
* add explanation
* add explanation
2022-02-22 18:00:47 +08:00
3f138ebaaf
[Bugfix] Bug fixes in new dataloader ( #3727 )
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* fixes
* fix
* more fixes
* update
* oops
* lint?
* temporarily revert - will fix in another PR
* more fixes
* skipping mxnet test
* address comments
* fix DDP
* fix edge dataloader exclusion problems
* stupid bug
* fix
* use_uvm option
* fix
* fixes
* fixes
* fixes
* fixes
* add evaluation for cluster gcn and ddp
* stupid bug again
* fixes
* move sanity checks to only support DGLGraphs
* pytorch lightning compatibility fixes
* remove
* poke
* more fixes
* fix
* fix
* disable test
* docstrings
* why is it getting a memory leak?
* fix
* update
* updates and temporarily disable forkingpickler
* update
* fix?
* fix?
* oops
* oops
* fix
* lint
* huh
* uh
* update
* fix
* made it memory efficient
* refine exclude interface
* fix tutorial
* fix tutorial
* fix graph duplication in CPU dataloader workers
* lint
* lint
* Revert "lint"
This reverts commit 805484dd553695111b5fb37f2125214a6b7276e9.
* Revert "lint"
This reverts commit 0bce411b2b415c2ab770343949404498436dc8b2.
* Revert "fix graph duplication in CPU dataloader workers"
This reverts commit 9e3a8cf34c175d3093c773f6bb023b155f2bd27f.
Co-authored-by: xiny <xiny@nvidia.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2022-02-22 01:30:31 +08:00
e9c3c0e8ad
[Model] Simplify RGCN
...
* Update (#5 )
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* FIx
* Try
* Update
* Update
* Update
* Fix
* Update
* Fix
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Update
* Update
* Fix
* Fix
* Update
* Update
* Update
* Update
* Fix
* Fix
* Fix
* Update
* Update
* Update
* Update
* Update
* Update README.md
* Update
* Fix
* Update
* Update
* Fix
* Fix
* Fix
* Update
* Update
* Update
Co-authored-by: Ubuntu <ubuntu@ip-172-31-6-240.us-west-2.compute.internal >
* Update
* Update
* Fix
* Update
* Update
* Update
* Fix
* Update
* Update
* Update
* Update
* Update
* Update
* CI
Co-authored-by: Ubuntu <ubuntu@ip-172-31-6-240.us-west-2.compute.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-57-123.us-west-2.compute.internal >
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2022-02-17 15:33:27 +08:00
3b34a5a7ec
Add links to RNAGlib in the DGL Readme ( #3728 )
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* Add RNAGlib to examples and DGL-powered-projects
* Add RNAGlib to examples and DGL-powered-projects
* Add RNAGlib to examples and DGL-powered-projects
2022-02-11 15:00:18 -08:00
738e8318fd
[Feature] CUDA UVA sampling for MultiLayerNeighborSampler ( #3674 )
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* implement pin_memory/unpin_memory/is_pinned for dgl.graph
* update python docstring
* update c++ docstring
* add test
* fix the broken UnifiedTensor
* XPU_SWITCH for kDLCPUPinned
* a rough version ready for testing
* eliminate extra context parameter for pin/unpin
* update train_sampling
* fix linting
* fix typo
* multi-gpu uva sampling case
* disable new format materialization for pinned graphs
* update python doc for pin_memory_
* fix unit test
* UVA sampling for link prediction
* dispatch most csr ops
* update graphsage example to combine uva sampling and UnifiedTensor
* update graphsage example to combine uva sampling and UnifiedTensor
* update graphsage example to combine uva sampling and UnifiedTensor
* update doc
* update examples
* change unitgraph and heterograph's PinMemory to in-place
* update examples for multi-gpu uva sampling
* update doc
* fix linting
* fix cpu build
* fix is_pinned for DistGraph
* fix is_pinned for DistGraph
* update graphsage unsupervised example
* update doc for gpu sampling
* update some check for sampling device switching
* fix linting
* adapt for new dataloader
* fix linting
* fix
* fix some name issue
* adjust device check
* add unit test for uva sampling & fix some zero_copy bug
* fix linting
* update num_threads in graphsage examples
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2022-02-09 14:06:17 +08:00
0767c5fcc9
Fix dist example padding problem ( #3687 )
2022-02-07 17:44:44 +08:00
701b4fccc2
[Sampling] New sampling pipeline plus asynchronous prefetching ( #3665 )
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* initial update
* more
* more
* multi-gpu example
* cluster gcn, finalize homogeneous
* more explanation
* fix
* bunch of fixes
* fix
* RGAT example and more fixes
* shadow-gnn sampler and some changes in unit test
* fix
* wth
* more fixes
* remove shadow+node/edge dataloader tests for possible ux changes
* lints
* add legacy dataloading import just in case
* fix
* update pylint for f-strings
* fix
* lint
* lint
* lint again
* cherry-picking commit fa9f494
* oops
* fix
* add sample_neighbors in dist_graph
* fix
* lint
* fix
* fix
* fix
* fix tutorial
* fix
* fix
* fix
* fix warning
* remove debug
* add get_foo_storage apis
* lint
2022-01-30 16:13:00 +08:00
8f99b13193
feature: add a parse parameter degree_as_nlabel for pytorch-gin demo ( #3676 )
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* feature: add a parse parameter degree_as_nlabel for pytorch-gin demo
* fix some typo
* [fix]: allow to benchmark all of the 9 dataset.
* [Feature] add epoch number to log
* [Feature]:simply list the command lines for all datasets (https://github.com/dmlc/dgl/pull/3676#discussion_r790270705 ) and run a test.
* Update README.md
Co-authored-by: Ubuntu <ubuntu@ip-172-31-10-175.ap-northeast-1.compute.internal >
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-01-25 19:24:41 +08:00
9a6b81ef7d
[Bugfix] Improve CompGCN ( #3663 )
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Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-01-23 22:44:29 +08:00
ed4134ed74
[Example] fix auc in caregnn example ( #3647 )
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Co-authored-by: zhjwy9343 <6593865@qq.com >
2022-01-21 18:33:29 +08:00
14ab462fd8
Update examples/pytorch/graphsage/experimental/README.md
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Co-authored-by: Minjie Wang <minjie.wang@nyu.edu >
2022-01-20 09:19:47 -08:00
3b1978a379
fix.
2022-01-19 12:49:55 -08:00
8d14a739bc
fix. ( #3652 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-30-164.us-west-2.compute.internal >
2022-01-15 09:12:13 +08:00
4889c57822
Add 'nccl' backend in train_dist.py and fix pad_data function cuda bug ( #3607 )
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* Add nccl backend and fix pad_data function cuda bug
* Update train_dist.py
* Update train_dist.py
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-12-24 18:45:01 +08:00
42897c3652
[Example] An example that re-creates the PyG OGB performance on ogbnmag ( #3563 )
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* Adding initial files of example
* Removing old timing code
* Improving doc strings and fixing some minor bugs
* Merging from upstream and addressing PR comments
Co-authored-by: zakjost <jostza@amazon.com >
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2021-12-20 22:22:25 +08:00
Mufei Li