0d1807ecf4
update version
2021-11-05 03:12:27 +00:00
ef1b7175d5
fix compatibility with PyTorch 1.10 ( #3454 )
2021-11-04 08:20:44 +00:00
87a4cb363a
Fix #3437 ( #3440 )
2021-11-04 08:20:22 +00:00
c7f94dbf5a
[BugFix] Avoid Memory Leak Issue in PyTorch Backend ( #3386 )
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* try to avoid memory leak
* try to avoid memory leak
* avoid memory leak with no hope
* Revert "avoid memory leak with no hope"
This reverts commit c77befe9479f46758e744642f66dd209b50eef7d.
* no message
* Update sparse.py
* Update tensor.py
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-11-04 08:18:40 +00:00
a63ad14bda
[PyTorch][Bugfix] Use uint8 instead of bool in pytorch to be compatible with nightly version ( #3406 )
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* Use uint8 instead of bool in pytorch
* Handle type aliases
* Fix syntax error
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-11-04 08:15:46 +00:00
bf11b19e76
Update dataloader.py ( #3322 )
2021-11-04 08:14:21 +00:00
23d575ba81
[Bug] Do not skip graphconv even no edge exists ( #3416 )
2021-11-04 06:14:10 +00:00
ee183f69a1
[BugFix] add count_nonzero() into SA_Client ( #3417 )
2021-11-04 06:13:40 +00:00
cc83b49e01
[Bug] check dtype before convert to gk ( #3414 )
2021-11-04 06:13:19 +00:00
56b04b2125
[BugFix] extract gz into target dir ( #3389 )
2021-11-04 06:11:41 +00:00
6df6a0881e
[BugFix] fix typo in fakenews dataset variable name ( #3363 )
2021-11-04 06:09:43 +00:00
9b597b8e74
fix broadcast tensor dim ( #3351 )
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Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-11-04 06:09:09 +00:00
f9d51fdf0b
[Feature] Add a HINT for the per edge type sampler of heterogeneous DistGraph that highlighting the etypes are sorted already. ( #3260 )
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* pass cpp test
* distgraph use sorted edge flag.
* lint
* triger
* update test
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-66.ec2.internal >
2021-11-04 06:02:42 +00:00
269f90428c
[Bugfix] Fix #3291 ( #3333 )
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* Fix #3291
* update
* fix
* Unit key
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-66.ec2.internal >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-11-04 05:49:24 +00:00
f77bee328a
[Bugfix] Fix bugs of farthest_point_sampler ( #3327 )
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* fix start_idx
* fix the bug when cuda > 0
Co-authored-by: Tong He <hetong007@gmail.com >
2021-11-04 05:48:21 +00:00
95b1eb734f
[Distributed] Fix a bug in sampling an empty frontier ( #3298 )
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* handle empty frontiers.
* fix lint.
* fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-202.us-west-1.compute.internal >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2021-11-02 09:51:03 +00:00
6b6174a5c4
Cleanup some code in graph_services.py ( #3238 )
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* Fix bug
* Fix
* Fix
* upd
* Merge some code
* lint
2021-11-02 09:50:37 +00:00
4010e20cd9
[Bugfix] Distributed training can not work with dgl.dataloading.negative_sampler ( #3215 )
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* Fix dist negative data loader bug
* upd
* Fix
Co-authored-by: Da Zheng <zhengda1936@gmail.com >
2021-11-02 09:23:21 +00:00
0246bf5567
[Bugfix] Fix bug introduced by https://github.com/dmlc/dgl/pull/3131 ( #3234 )
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* Fix bug
* Fix
* Fix
* upd
* trigger
2021-11-02 09:22:52 +00:00
f0903275e8
[Distributed] Enable distributed EdgeDataLoader ( #3192 )
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* make heterogeneous find_edges
* add distributed EdgeDataLoader.
* fix.
* fix a bug.
* fix bugs.
* add tests on distributed heterogeneous graph sampling.
* fix.
Co-authored-by: Zheng <dzzhen@3c22fba32af5.ant.amazon.com >
2021-11-02 09:22:10 +00:00
508197e807
[New Feature] Per edge type sampler for to_homogeneous graphs. ( #3131 )
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* fix.
* fix.
* fix.
* fix.
* Fix test
* Deprecate old DistEmbedding impl, use synchronized embedding impl
* Basic imple of heterogeneous on homogenenous sampling
* make pass
* Pass C++ test
* Add python test code
* lint
* lint
* Add MultiLayerEtypeNeighborSampler
* Add unitest for single machine dataloader
* Add dist dataloader test for edge type sampler
* Fix lint
* fix
* support for per etype sample
* Fix some bug and enable distributed training with per edge sample
* fix
* Now distributed training works
* turn off some mxnet
* turn off mxnet for some dist test
* fix
* upd
* upd according to the comments
* Fix
* Fix test and now distributed works.
* upd
* upd
* Fix
* Fix bug
* remove dead code.
* upd
* Fix
* upd
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-66.ec2.internal >
Co-authored-by: Da Zheng <zhengda1936@gmail.com >
2021-11-02 09:21:20 +00:00
223795eb82
[Distributed] Distributed heterograph training ( #3069 )
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* support hetero RGCN.
* fix.
* simplify code.
* sample_neighbors return heterograph directly.
* avoid using to_heterogeneous.
* compute canonical etypes in advance.
* fix tests.
* fix.
* fix distributed data loader for heterograph.
* use NodeDataLoader.
* fix bugs in partitioning on heterogeneous graphs.
* fix lint.
* fix tests.
* fix.
* fix.
* fix bugs.
* fix tests.
* fix.
* enable coo for distributed.
* fix.
* fix.
* fix.
* fix.
* fix.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal >
Co-authored-by: Zheng <dzzhen@3c22fba32af5.ant.amazon.com >
2021-11-02 09:18:15 +00:00
2b80161865
update version
2021-08-26 17:33:50 +00:00
eca9b8ef08
allow for configuring default_dir ( #3277 )
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* allow for configuring default_dir
* allow for using DGLDEFAULTDIR environment variable
* Update env_var.rst
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-08-26 17:32:16 +00:00
d9e2618b20
[Doc] fix formula in RelGraphConv ( #3285 )
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* [Doc] fix formula in RelGraphConv
* refine descriptions
2021-08-26 17:32:10 +00:00
1fa3202bbd
fix relgraphconv bug ( #3256 )
2021-08-26 17:31:41 +00:00
50b87596b8
[Doc] fix formula display issue in EdgeWeightNorm ( #3275 )
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Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2021-08-26 17:31:35 +00:00
b7af145d0b
[bugfix] fix the bug of DotGatConv when compute the edge_softmax ( #3272 )
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Co-authored-by: Zihao Ye <expye@outlook.com >
2021-08-20 02:47:54 +00:00
d9a2d74167
[Performance][Feature] Implement edge excluding in EdgeDataLoader on GPU ( #3226 )
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* Update filter code
* Add unit tests
* Fixes
* Switch to indices
* Rename functions
* Fix linting
* Fix whitespace
* Add doc
* Fix heterograph
* Change workspace allocation
* Fix linting
* Fix docs in filter.py
* Add todo
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2021-08-20 02:47:48 +00:00
92550b3b03
[perf] Remove activation cache if not required. ( #3258 )
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* upd
* fix
* upd
2021-08-20 02:44:06 +00:00
731660d23e
fixed typos in docs and docstring ( #3231 )
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Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2021-08-20 02:41:21 +00:00
43c6ccc9bd
Fix small typo in knn_graph() documentation ( #3244 )
2021-08-20 02:40:05 +00:00
55dfef0e81
[Fix] FIx check for num_workers for using ScalarDataBatcher ( #3219 )
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Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-08-20 02:36:53 +00:00
72b95fe186
Update citation_graph.py ( #3221 )
2021-08-20 02:36:20 +00:00
7466f9b1b8
[feature] add count_nonzero function for DistTensor ( #3203 )
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* add count_nonzero function for DistTensor
* change the load method of local data
Co-authored-by: liuzichang04 <liuzichang04@meituan.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Da Zheng <zhengda1936@gmail.com >
2021-08-20 02:36:15 +00:00
b5a1eea5ed
[bugfix] Fix force_reload parameter of FraudDataset ( #3210 )
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* enable force_reload of FraudDataset
* rewrite hash_key in FraudDataset
2021-08-20 02:33:19 +00:00
526d4ac0bb
[Doc] Fix random_walk documentation inconsistency ( #3188 )
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* Update randomwalks.py
* Update randomwalks.py
FIx lint
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-08-20 02:26:20 +00:00
988cf98e43
Improve usage of pinned memory in sparse_optimizer ( #3207 )
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Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2021-08-20 02:25:43 +00:00
dfe422dd33
[Distributed] Fix distributed training hang with multiple samplers ( #3169 )
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Rewrite the multiprocessing worker pool
2021-08-20 02:24:06 +00:00
fb5464df76
[Model] add model example CARE-GNN ( #3187 )
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* [Model] add model example CARE-GNN
* update README
* improvements based on the review feedback
* fix missing item()
Co-authored-by: zhjwy9343 <6593865@qq.com >
2021-08-20 02:19:12 +00:00
392a2e587d
[bugfix] fix default ntypes/etypes consistency between dgl.DGLGraph and dgl.graph ( #3198 )
2021-08-20 02:18:59 +00:00
35c898c9e9
Bug fix: change th to tf ( #3182 )
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Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2021-08-20 02:14:19 +00:00
5f5a6ef4f7
[Dataset] Fix the edge numbers in the GNNBenchmarkDataset doc string ( #3163 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* Hide implementations that may cause confusions to the user
* fix number of classes in Amazon Cobuy datasets
* add four papers
* Fix doc string
* fix readme
* fix readme
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2021-07-21 11:07:51 +00:00
86403757b7
update version
2021-07-19 01:58:21 +00:00
d539bb3d53
update version
2021-07-16 06:29:27 +00:00
18ddbb0ad3
update version
2021-07-16 06:29:27 +00:00
b379dbd6c8
Optimize dist_graph/_split_even_to_part memory usage ( #3132 )
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Co-authored-by: yujingcheng02 <yujingcheng02@meituan.com >
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com >
2021-07-15 11:51:56 +08:00
5cdf7cfa98
[Doc] refine metis part of dgl.reorder_graph() ( #3136 )
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Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2021-07-15 10:14:39 +08:00
3f6f694159
[Bug fix] Various fix from bug bash ( #3133 )
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* Update
* Update
* Update dependencies
* Update
* Update
* Fix ogbn-products gat
* Update
* Update
* Reformat
* Fix typo in node2vec_random_walk
* Specify file encoding
* Working for 6.7
* Update
* Fix subgraph
* Fix doc for sample_neighbors_biased
* Fix hyperlink
* Add example for udf cross reducer
* Fix
* Add example for slice_batch
* Replace dgl.bipartite
* Fix GATConv
* Fix math rendering
* Fix doc
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-17.us-west-2.compute.internal >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-22-156.us-west-2.compute.internal >
2021-07-15 09:17:15 +08:00
066bef21f0
[Doc] Fix CoraFull number of edges inconsistency in doc ( #3139 )
2021-07-14 15:06:57 +08:00
Quan Gan