8a07ab7737
[Doc] Tutorials re-organization ( #2683 )
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* reorg
* change titles
* rm some stale API doc; minor fix
* fix docs
* add warning
* rm new-tutorial run in ci
* lint
2021-02-20 17:42:45 +08:00
9e04a52abd
[Doc] Reorganize tutorial ( #2678 )
2021-02-19 13:49:13 +08:00
492ad9be81
[Fix] Avoid Overloading Nonzero for PyTorch Backend ( #2434 )
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* Update gatedgraphconv.py
* Update entity_classify.py
* Update data-process.rst
* Update reading_data.py
* Update data-process.rst
* Update utils.py
* Update knowledge_graph.py
* Update entity_classify.py
* Update rdf.py
* Update entity_classify_mb.py
* Update test_classify.py
* Update tensor.py
* Update sparse.py
* Update entity_classify_mp.py
* Update 6_line_graph.py
2020-12-20 13:12:17 +08:00
edb978772c
[Doc, UG, Tutorial] Misc Fix ( #2376 )
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* Update
* Update
* Update
* Update
* Update
2020-11-30 13:40:10 +08:00
4125f63e72
Update docs ( #2123 )
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* Remove SSE
* Update env_var.rst
2020-08-28 20:35:36 +08:00
ef78d675e9
Fix docs ( #2073 )
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* remove mxnet tutorial
* remove sse
* fix docs
2020-08-20 15:37:50 +08:00
100d932865
Update ( #2062 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal >
2020-08-19 17:42:48 +08:00
001d793711
[Dataset] SSTDataset ( #1918 )
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* PPIDataset
* Revert "PPIDataset"
This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.
* SSTDataset
* Update tree.py
2020-08-03 19:15:28 +08:00
63feb47c26
[Example] Update Links for Supervised Community Detection with Graph Neural Networks ( #1816 )
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* Update README.md
* Update README.txt
2020-07-17 17:13:25 +08:00
42b0c38f81
[Kernel] Migrate traversal on adjlist to CSR ( #1650 )
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* traversal to new framework
* add new
* Fix compile
* Pass test
* keep old version
* lint
* lint
* Fix
* Fix
* Fix compatability with new master
* Fix test and tutorials
* Update according to comments
* Fix test
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
2020-06-19 13:25:18 +08:00
9779c02667
Fix tutorial ( #1587 )
2020-06-04 15:17:03 +08:00
38b9c0f82f
[DGL-LifeSci] Allow Generating Vocabulary from a New Dataset ( #1577 )
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* Generate vocabulary from a new dataset
* CI"
2020-06-02 14:21:48 +08:00
1b152bf524
[Doc & Tutorial] Fix dgl.batch and GAT ( #1418 )
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* Update doc and tutorials
* Fix
2020-04-04 01:23:22 +08:00
2cdc4d3c1d
[Doc] Patch tutorial ( #1380 )
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* patched 1_first
* done 2_basics
* done 4_batch
* done 1_gcn, 9_gat, 2_capsule
* 4_rgcn.py
* revert
* more fix
2020-03-22 10:21:22 +08:00
93ac29ce34
[Refactor] Unify DGLGraph, BatchedDGLGraph and DGLSubGraph ( #1216 )
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* upd
* upd
* upd
* lint
* fix
* fix test
* fix
* fix
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd
* upd tutorial
* upd
* upd
* fix kg
* upd doc organization
* refresh test
* upd
* refactor doc
* fix lint
Co-authored-by: Minjie Wang <minjie.wang@nyu.edu >
2020-03-05 18:03:57 +08:00
c23a61bd5c
fix s3 link ( #1310 )
2020-03-04 21:01:29 +08:00
5967d81782
[Doc] Re-organize API docs and tutorials ( #1222 )
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* reorg tutorials and api docs
* fix
2020-01-26 21:26:34 +08:00
a199b58a6a
Fix ( #1195 )
2020-01-12 02:47:29 +08:00
41114b8758
[Doc] Tree-LSTM in DGL, edit pass for readability ( #1031 )
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* [Doc] Tree-LSTM in DGL, edit pass for readability
Edit for grammar and style.
How about deleting the last line? "Besides, you..." It needs a transition or some context.
* Update tutorials/models/2_small_graph/3_tree-lstm.py
* Update tutorials/models/2_small_graph/3_tree-lstm.py
2019-12-17 14:14:18 +08:00
f36a451420
[Doc] Old wines new title, edit for grammar and style ( #1027 )
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* Old wines new title, edit for grammar and style
new descriptive title here and an edit pass @aaronmarkham
* Update tutorials/models/4_old_wines/README.txt
2019-12-16 11:24:58 +08:00
48c7ec4427
[Doc] Fix gcn tutorial ( #1080 )
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* don't have activation.
* add evaluation.
* address comment.
2019-12-10 02:10:51 -08:00
7784f0668d
[Doc] Small graphs readme.txt, edit pass ( #1030 )
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* [Doc] Small graphs readme.txt, edit pass
Edit for grammar and style. Should this be an .rst on .txt?
* Update README.txt
2019-12-05 13:48:39 +08:00
5fc7eb6d97
[Doc] Generative models, edit pass ( #1035 )
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* [Doc] Generative models, edit pass
Edit for grammar and style. Can you clarify "Instead of and/or"?
* Update tutorials/models/3_generative_model/5_dgmg.py
* Update tutorials/models/3_generative_model/5_dgmg.py
Co-Authored-By: Aaron Markham <markhama@amazon.com >
* Update tutorials/models/3_generative_model/5_dgmg.py
Co-Authored-By: Aaron Markham <markhama@amazon.com >
* Update tutorials/models/3_generative_model/5_dgmg.py
Co-Authored-By: Aaron Markham <markhama@amazon.com >
* Update tutorials/models/3_generative_model/5_dgmg.py
Co-Authored-By: Aaron Markham <markhama@amazon.com >
2019-12-03 09:38:47 +08:00
f45178c334
[Doc] Generative models, edit for readability ( #1033 )
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Edit pass for grammar and style
2019-12-02 14:54:10 +08:00
d6dfaa9b74
[Doc] Capsule network tutorial, edit pass ( #1026 )
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Edited for grammar and style.
2019-12-01 22:26:51 +08:00
10b104dd35
[Doc] Transformer tutorial, edit for readability ( #1025 )
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Edit pass for grammar and style
2019-12-01 11:25:51 +08:00
a2b8d8e4e7
[Doc] Giant graph tutorial edit for grammar and style ( #1020 )
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* Edit for readability
* giant_graph_readme edit for grammar
* NodeFlow and Sampling edit pass for grammar
* Update tutorials/models/1_gnn/9_gat.py
* Update tutorials/models/1_gnn/9_gat.py
2019-11-30 12:31:59 +08:00
dd09f15fa7
[Doc] Stochastic steady-state embedding (SSE) Edit for readability
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Revisions for grammar and style
2019-11-30 11:37:17 +08:00
22d4de77a0
[Doc] 6_line_graph.py Edit pass ( #1003 )
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* Edit pass
Updates for grammar and readability
* Update tutorials/models/1_gnn/6_line_graph.py
* Update tutorials/models/1_gnn/6_line_graph.py
* Update tutorials/models/1_gnn/6_line_graph.py
2019-11-29 13:53:43 +08:00
287f387b8c
Edit for readability ( #1002 )
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Grammar and style updates
2019-11-29 10:53:11 +08:00
8ae9770f9b
[Doc] Graph neural network and its variant Edit for grammar and style ( #992 )
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* Edit for grammar and style
Improve readability
* Update tutorials/models/1_gnn/README.txt
Co-Authored-By: Aaron Markham <markhama@amazon.com >
* Update tutorials/models/1_gnn/README.txt
Co-Authored-By: Aaron Markham <markhama@amazon.com >
2019-11-28 15:44:58 +08:00
82499e602b
[Bug Fix] Fix package reliability bug of networkx ( #949 )
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* upd
* fig edgebatch edges
* add test
* trigger
* Update README.md for pytorch PinSage example.
Add noting that the PinSage model example under
example/pytorch/recommendation only work with Python 3.6+
as its dataset loader depends on stanfordnlp package
which work only with Python 3.6+.
* Provid a frame agnostic API to test nn modules on both CPU and CUDA side.
1. make dgl.nn.xxx frame agnostic
2. make test.backend include dgl.nn modules
3. modify test_edge_softmax of test/mxnet/test_nn.py and
test/pytorch/test_nn.py work on both CPU and GPU
* Fix style
* Delete unused code
* Make agnostic test only related to tests/backend
1. clear all agnostic related code in dgl.nn
2. make test_graph_conv agnostic to cpu/gpu
* Fix code style
* fix
* doc
* Make all test code under tests.mxnet/pytorch.test_nn.py
work on both CPU and GPU.
* Fix syntex
* Remove rand
* Add TAGCN nn.module and example
* Now tagcn can run on CPU.
* Add unitest for TGConv
* Fix style
* For pubmed dataset, using --lr=0.005 can achieve better acc
* Fix style
* Fix some descriptions
* trigger
* Fix doc
* Add nn.TGConv and example
* Fix bug
* Update data in mxnet.tagcn test acc.
* Fix some comments and code
* delete useless code
* Fix namming
* Fix bug
* Fix bug
* Add test for mxnet TAGCov
* Add test code for mxnet TAGCov
* Update some docs
* Fix some code
* Update docs dgl.nn.mxnet
* Update weight init
* Fix
* reproduce the bug
* Fix concurrency bug reported at #755 .
Also make test_shared_mem_store.py more deterministic.
* Update test_shared_mem_store.py
* Update dmlc/core
* networkx >= 2.4 will break our examples
* Update tutorials/requirements
* fix selfloop edges
* upd version
2019-10-29 23:34:31 -04:00
c2b8af452c
change the backend to mxnet. ( #894 )
2019-10-01 23:42:21 -07:00
be58224f0e
[CI] enable tutorial test in CI. ( #631 )
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* enable tutorial test in CI.
* reduce overhead.
2019-06-13 02:31:36 -07:00
e16e895d53
[Doc] fix some document warnings ( #645 )
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* fix doc
* fix some format and warnings
* fix
2019-06-11 13:41:41 -04:00
ebbb6296f9
[Doc] doc page for builtin functions ( #642 )
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* doc page for builtin functions; install from source doc
* upload rst
* update
2019-06-10 18:29:28 -04:00
c5ab5b7204
[Doc] Tutorial minor fix ( #601 )
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* minor fix
* Update 2_giant.py
2019-06-03 19:13:18 +08:00
0554824830
[Doc] fix the giant graph tutorial ( #591 )
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* fix.
* fix.
2019-06-01 14:37:17 -07:00
f728839bb7
[Doc] tutorial of components for giant graph ( #590 )
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* tutorial.
* update images.
2019-05-31 17:37:43 +08:00
acefb9a9f0
[BUGFIX] fix the problems in the sampling tutorial. ( #523 )
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* add index.
* update.
* update tutorial.
2019-05-07 18:19:07 -07:00
edf3951c18
[Tutorial] add sampling tutorial. ( #522 )
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* add sampling tutorial.
* add readme
* update author list.
* fix indent in the code.
* rename the file.
* update tutorial.
* fix the last API.
* update image.
2019-05-07 17:29:18 -07:00
ca48787ae4
fix tutorial ( #506 )
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* Update 9_gat.py
* Update 1_gcn.py
2019-04-23 15:30:59 +08:00
681e5217dd
[Refactor] Sampler code refactor ( #454 )
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* refactored sampler code
* docstring
* fix tutorial
2019-03-18 10:41:35 -04:00
bea07b41b3
[Sampler] fix the API of neighbor sampler. ( #407 )
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* don't return aux_info.
* fix sampler test.
* fix sse.
* fix.
* add comment.
2019-02-28 13:45:21 -08:00
3f891b64b7
[Tutorial] Fix gat tutorial ( #420 )
2019-02-28 11:10:14 -05:00
98ff82e527
[Doc] Tutorial for GAT ( #400 )
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* 9_gat.py
* readme
* Update 9_gat.py
* Update 9_gat.py
* fix format
2019-02-20 22:50:55 -05:00
f370e628cd
[Feature] add NodeFlow API ( #361 )
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* sample layer subgraphs.
* fix.
* fix.
* add layered subgraph.
* fix lint.
* fix.
* fix tutorial.
* fix.
* remove copy_to_parent.
* add num_layers
* move sampling code to sampler.cc
* fix.
* move subgraph construction out.
* Revert "move subgraph construction out."
This reverts commit 24b3d13b0d8ed5f91847ea75a7674ee8f7d45cff.
* change to NodeFlow.
* use NodeFlow in Python.
* use NodeFlowIndex.
* add node_mapping and edge_mapping.
* remove unnecessary code in SSE tutorial.
* Revert "remove unnecessary code in SSE tutorial."
This reverts commit 093f0413d5fa2e63ca5f80c46c80a126a9fb720c.
* fix tutorial.
* move to node_flow.
* update gcn cv updater.
* import NodeFlow.
* update.
* add demo code for vanilla control variate sampler.
* update.
* update.
* add neighbor sampling.
* return flow offsets.
* update node_flow.
* add test.
* fix sampler.
* fix graph index.
* fix a bug in sampler.
* fix map_to_layer_nid and map_to_flow_eid.
* fix apply_flow.
* remove model code.
* implement flow_compute.
* fix a bug.
* reverse the csr physically.
* add mini-batch test.
* add mini batch test.
* update flow_compute.
* add prop_flows
* run on specific nodes.
* test copy
* fix a bug in creating frame in NodeFlow.
* add init gcn_cv_updater.
* fix a minor bug.
* fix gcn_cv_updater.
* fix a bug.
* fix a bug in NodeFlow.
* use new h in gcn_cv_updater.
* add layer_in_degree and layer_out_degree.
* fix gcn_cv_updater for gpu.
* temp fix in NodeFlow for diff context.
* allow enabling/disabling copy back.
* add with-updater option.
* fix a bug in computing degree.
* add with-cv option.
* rename and add comments.
* fix lint complain.
* fix lint.
* avoid assert.
* remove assert.
* fix.
* fix.
* fix.
* fix.
* fix the methods in NodeFlow.
* fix lint.
* update SSE.
* remove gcn_cv_updater.
* correct comments for the schedulers.
* update comment.
* add map_to_nodeflow_nid
* address comment.
* remove duplicated test.
* fix int.
* fix comments.
* fix lint
* fix.
* replace subgraph with NodeFlow.
* move view.
* address comments.
* fix lint.
* fix lint.
* remove static_cast.
* fix docstring.
* fix comments.
* break SampleSubgraph.
* move neighbor sampling to sampler.cc
* fix comments.
* rename.
* split neighbor_list.
* address comments.
* fix.
* remove TODO.
2019-02-19 15:49:28 -08:00
ae1806f651
[Bugfix] RGCN tutorial ( #388 )
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* fix rgcn tutorial
* small fix
* upd
2019-02-15 11:14:56 +08:00
707334ce85
minor spelling tweaks ( #349 )
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* minor spelling tweaks
* Update CONTRIBUTORS.md
2019-01-10 12:02:31 -05:00
6f9ae8d61e
[Doc] main doc page update and contribute guide ( #336 )
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* reorg the doc mainpage
* contribute guide
2019-01-04 17:02:37 -05:00
Minjie Wang