444becf00a
[Misc] Move many deprecated codes to the deprecate folder ( #1893 )
...
* some file movements
* move some codes to deprecated
* more deprecation
* lint
* remove useless test
2020-07-30 18:17:33 +08:00
7c47d8c9b4
[Feature] Simplify shared memory graph index ( #1381 )
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* simplify shared memory graph index.
* fix.
* remove edge_dir in SharedMemGraphStore.
* avoid creating shared-mem graph store with from_csr.
* simplify from_csr.
* add comments.
* fix lint.
* remove the test.
* fix compilation error.
* fix a bug.
* fix a bug.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-150.us-west-2.compute.internal >
2020-04-05 15:33:47 -07:00
67cb7a43a0
[Feature] Deprecate multigraph ( #1389 )
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* Deprecate multi-graph
* Handle heterograph and edge_ids
* lint
* Fix
* Remove multigraph in C++ end
* Fix lint
* Add some test and fix something
* Fix
* Fix
* upd
* Fix some test case
* Fix
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2020-03-28 21:31:24 +08:00
02029dce9b
Sync initializers ( #772 )
2019-08-17 20:25:54 +08:00
94ecb8eb96
[BUGFIX] copy graph index to shared memory. ( #634 )
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* copy graph index to shared memory.
* fix.
* fix.
* fix.
* use a diff name for in-csr and out-csr.
* fix lint.
* remove print.
* add test.
* add comments.
2019-06-12 01:32:25 -07:00
16ec2a8b10
we need to sync for mxnet. ( #648 )
2019-06-11 18:22:21 -07:00
411bcd7e6c
[BUGFIX] extand DGLGraph graph_data. ( #632 )
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* enable tutorial test in CI.
* extand DGLGraph graph_data.
* update doc.
* Revert "enable tutorial test in CI."
This reverts commit cd774067180922bb6ae979bde4aecbffc61c8147.
* accept DGLGraph in graph store.
2019-06-09 17:22:04 -07:00
2e9949d228
[BUGFIX] Fix bugs in shared mem graph store. ( #630 )
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* fix graph store for Pytorch.
* add test.
* fix dtype error in test
* disable test on GPU.
* test avoid windows.
* fix shared-memory test.
* use script to control testing environment.
* update test.
* enable all tests.
* fix test script.
2019-06-09 13:08:47 -07:00
01a4cc5b7b
[Graph] Add API to convert graph to simple graph ( #587 )
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* to simple
* WIP: multigraph flag
* graph index refactor; pass basic testing
* graph index refactor; pass basic testing
* fix bug in to_simple; pass torch test
* fix mx utest
* fix example
* fix lint
* fix ci
* poke ci
* poke ci
* WIP
* poke ci
* poke ci
* poke ci
* change ci workspace
* poke ci
* poke ci
* poke ci
* poke ci
* delete ci
* use enum for multigraph flag
2019-06-01 23:32:46 -04:00
372203f04a
[Test] Fix tests in test_shared_mem_store. ( #588 )
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* fix test.
* better assert.
* more asserts.
* print to stderr.
* destroy g.
* fix tests.
* add timeout in sync_barrier.
* test _sync_barrier.
* fix.
* avoid printing messages.
* fix test.
* fix test.
* fix.
2019-06-01 21:18:01 -04:00
16af6ebd3b
[Test] Add cpp test to CI ( #567 )
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* add cpptest to ci
* try windows
* Update Jenkinsfile
* Update Jenkinsfile
* Update Jenkinsfile
* Update task_cpp_unit_test.bat
* Change localhost to 127.0.0.1
* windows socket gtest
* lint
* Update task_cpp_unit_test.bat
* fix batch script
* export all symbols
* Update Jenkinsfile
* compile once
* try mxnet compact
2019-05-30 11:01:16 -04:00
8f378d90ad
[BUGFIX] fix bugs for running GCN on giant graphs. ( #561 )
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* load mxnet csr.
* enable load large csr.
* fix
* fix.
* fix int overflow.
* fix test.
2019-05-25 11:09:33 -07:00
924efc6520
[Perf] Improve performance of graph store. ( #554 )
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* fix.
* use inplace.
* move to shared memory graph store.
* fix.
* add more unit tests.
* fix.
* fix test.
* fix test.
* disable test.
* fix.
2019-05-23 12:23:31 -07:00
b2b8be25bb
[API] update graph store API. ( #549 )
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* add init_ndata and init_edata in DGLGraph.
* adjust SharedMemoryGraph API.
* print warning.
* fix comment.
* update example
* fix.
* fix examples.
* add unit tests.
* add comments.
2019-05-21 03:27:05 -07:00
cdfca992e1
[BUGFix] Improve multi-processing training ( #526 )
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* fix.
* add comment.
* remove.
* temp fix.
* initialize for shared memory.
* fix graphsage.
* fix gcn.
* add more unit tests.
* add more tests.
* avoid creating shared-memory exclusively.
* redefine remote initializer.
* improve initializer.
* fix unit test.
* fix lint.
* fix lint.
* initialize data in the graph store server properly.
* fix test.
* fix test.
* fix test.
* small fix.
* add comments.
* cleanup server.
* test graph store with a random port.
* print.
* print to stderr.
* test1
* test2
* remove comment.
* adjust the initializer signature.
2019-05-20 14:23:19 -07:00
3a1392e641
[Model] add multiprocessing training with sampling. ( #484 )
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* reorganize sampling code.
* add multi-process training.
* speed up gcn_cv
* fix graphsage_cv.
* add new API in graph store.
* update barrier impl.
* support both local and distributed training.
* fix multiprocess train.
* fix.
* fix barrier.
* add script for loading data.
* multiprocessing sampling.
* accel training.
* replace pull with spmv for speedup.
* nodeflow copy from parent with context.
* enable GPU.
* fix a bug in graph store.
* enable multi-GPU training.
* fix lint.
* add comments.
* rename to run_store_server.py
* fix gcn_cv.
* fix a minor bug in sampler.
* handle error better in graph store.
* improve graphsage_cv for distributed mode.
* update README.
* fix.
* update.
2019-05-06 23:51:56 -07:00
bfdd1eaa44
[Feature] Create shared memory graph store. ( #468 )
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* accelerate gcn_ns.
* add timing.
* run infer with whole graph.
* distributed gcn_ns.
* reconstruct gcn_ns.
* minor fix.
* change graphsage_cv for numa.
* fix #OMP threads.
* accelerate graphsage_cv.
* fix a weird bug.
* add profiler in graphsage_cv.
* accelerate graphsage_cv.
manually aggregate neighbors' embeddings with pull.
* load csr directly in gcn_ns_sc.
* parallel sort for graph index.
* Revert "parallel sort for graph index."
This reverts commit 86fe2c7117fe5e56b0d481b39849c258b166945b.
* run gcn_ns_sc on GPUs.
* acc gcn_cv_sc.
* change gcn_cv for numa.
* fix gcn_cv to use numa and gpu.
* improve graphsage_cv to use numa and gpu.
* improve gcn_ns.
* improve graphsage_cv.
* init shared memory graph store.
* fix.
* enable init ndata.
* improve tests.
* add bidirectional communication.
* link to rt.
* fix compilation error.
* fix shared memory init.
* use MessageQueue for inter-process communication.
* reconstruct immutable graph csr.
* fix gcn.
* load csr to shared memory.
* fix minor bugs.
* add comments.
* refactor SharedMemory.
* fix bugs in ImmutableGraph.
* create CSR graph from shared memory.
* add more test for loading a csr graph.
* terminate graph store properly.
* allow initializing ndata in the graph store server.
* use RPC for inter-process communication.
* a script for loading a graph.
* allow customizing port.
* list all ndata and edata.
* support dtype.
* reorganize SharedMemoryGraphStore.
* fix ndata shape.
* reconstruct gcn_ns.
* print info.
* set omp in gcn_ns.
* reset sampling examples.
* fix lint.
* fix lint.
* reset gcn.
* disable shared memory in windows.
* fix.
* fix.
* reset changes.
* revert nodeflow changes.
* fix cmake.
* fix test.
* fix test.
* fix test.
* fix test.
* add comments.
* fix test.
* move vector out.
* fix lint.
* fix lint.
* move SharedMemory.
* update cmake.
* update comment.
* fix comments.
* Revert "update cmake."
This reverts commit 592445e37077f70a6e3f2e5245f9a3d086b04f3b.
* update cmake.
* add comments.
* rename.
* change the comment.
* fix a bug.
* rename.
* add comments.
* add comments.
* add init_edata.
* rewrite memory alloc.
* move vector to CSR.
* fix.
* init data.
* Revert "init data."
This reverts commit 2b217b9553911b7dd84a9f1d9b68430b5aa18e23.
* init data.
* init new columns correctly.
2019-04-08 12:09:02 -07:00
Minjie Wang