3ca52b1e59
[Fix] Various Fix after Bug Bash ( #2620 )
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* update
* Misc fix
* Update
2021-02-05 17:34:16 +08:00
6c23fba8fa
[Doc][Org] move edge_softmax to functional ( #2442 )
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* move edge_softmax to functional
* change examples
* fixes
* revert
* fix
* fix
* remove
* fix
* test
* add init
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-01-26 12:46:37 +08:00
1502c56d51
[Doc] Fix typo of datasets ( #2517 )
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Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2021-01-13 12:34:47 +08:00
927d2b319b
[Example] Move Data to GPU before Minibatch Training ( #2453 )
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* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
2020-12-28 21:26:32 +08:00
492ad9be81
[Fix] Avoid Overloading Nonzero for PyTorch Backend ( #2434 )
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* Update gatedgraphconv.py
* Update entity_classify.py
* Update data-process.rst
* Update reading_data.py
* Update data-process.rst
* Update utils.py
* Update knowledge_graph.py
* Update entity_classify.py
* Update rdf.py
* Update entity_classify_mb.py
* Update test_classify.py
* Update tensor.py
* Update sparse.py
* Update entity_classify_mp.py
* Update 6_line_graph.py
2020-12-20 13:12:17 +08:00
b8cc26e34a
[Model] SIGN for OGB dataset ( #2316 )
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* sign for ogbn products, arxiv, mag
* texts
* fix
* update ogb folder readme
* use dgl nightly build
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2020-11-03 10:28:31 +08:00
269983dbcd
[Fix] typo ( #2265 )
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* upd
* upd
* upd
* upd
* upd
* fix OpenMP compatibility issues
* typo
* partition
* misc
* fix typo
* num_parts=1
* import torch
* long
* print info
* print info
* print info
* upd
* remove debug code
* revert partition.py
* fix cut count
* fix cut count
* Revert "fix cut count"
This reverts commit 10926b4fd48f45c8f1ddb58be7db6c22e653effd.
* Revert "fix cut count"
This reverts commit 76465283bef093a2b4209ad70dd15d2437b2ec8a.
* type of deprecate
* typo in deprecate info
* fix typo
* use cv for partitioning
* CE
* no message
* revert
* typo
* no message
* no message
* no message
* practice
* dmlc-core
* DGLGraph
Co-authored-by: yzh119 <expye@outlook.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2020-10-29 23:05:36 +08:00
d06c540336
[Example] fix print info ( #2305 )
2020-10-29 09:20:27 +08:00
eef4c05929
[Example] Implement LINE with dgl and pytorch ( #2195 )
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* line
* two lines
* update readme
* readme
* update readme
* update
* Implement LINE
* readme
* readme
* typos
* update readme
Co-authored-by: Zihao Ye <expye@outlook.com >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2020-09-21 02:30:34 +08:00
47bb05939d
[Example] GAT on ogbn-arxiv ( #2210 )
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* [Example] GCN on ogbn-arxiv dataset
* Add README.md
* Update GCN implementation on ogbn-arxiv
* Update GCN on ogbn-arxiv
* Fix typo
* Use evaluator to get results
* Fix duplicated
* Fix duplicated
* Update GCN on ogbn-arxiv
* Add GAT for ogbn-arxiv
* Update README.md
* Update GAT on ogbn-arxiv
* Update README.md
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
Co-authored-by: Zihao Ye <expye@outlook.com >
2020-09-18 11:45:13 +08:00
9488bace20
[Fix] fix some typos in example/ogb/deepwalk/ ( #2190 )
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* line
* two lines
* update readme
* readme
* update readme
* update
Co-authored-by: Zihao Ye <expye@outlook.com >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-09-15 11:01:44 +08:00
0afacfb873
Fix create_format_ to create_formats ( #2184 )
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* Update dgl.DGLGraph.rst
* Update gcn.py
2020-09-12 14:44:30 +08:00
3659fb05e9
[Example] Fix duplicated ( #2154 )
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* [Example] GCN on ogbn-arxiv dataset
* Add README.md
* Update GCN implementation on ogbn-arxiv
* Update GCN on ogbn-arxiv
* Fix typo
* Use evaluator to get results
* Fix duplicated
* Fix duplicated
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
Co-authored-by: Zihao Ye <expye@outlook.com >
2020-09-05 23:35:12 +08:00
036084f6b6
[Example] Update GCN on ogbn-arxiv dataset ( #2153 )
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* [Example] GCN on ogbn-arxiv dataset
* Add README.md
* Update GCN implementation on ogbn-arxiv
* Update GCN on ogbn-arxiv
* Fix typo
* Use evaluator to get results
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
Co-authored-by: Zihao Ye <expye@outlook.com >
2020-09-05 20:07:50 +08:00
1a131f6b9d
[Example] GCN on ogbn-arxiv dataset ( #2146 )
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* [Example] GCN on ogbn-arxiv dataset
* Add README.md
* Update GCN implementation on ogbn-arxiv
* Update GCN on ogbn-arxiv
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
Co-authored-by: Zihao Ye <expye@outlook.com >
2020-09-04 15:00:45 +08:00
1e3fcc7c53
update comments ( #2132 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
2020-08-31 13:23:43 +08:00
7993a4d8e3
[Example] GCN on ogbn-arxiv dataset ( #2124 )
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* [Example] GCN on ogbn-arxiv dataset
* Add README.md
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
Co-authored-by: Zihao Ye <expye@outlook.com >
2020-08-30 22:03:07 +08:00
9eaace9216
rename create_format_ to create_formats_ ( #2126 )
2020-08-29 22:49:27 +08:00
8f3e423c74
update Readme ( #2068 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-63-129.ec2.internal >
2020-08-19 23:04:19 +08:00
b1e69105d4
[Doc] API Doc update for mxnet and tf, remove some degree check ( #2028 )
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* mx tf relconv
* use method instead of private attr
* src and dst have different fc for gat
* update edgeconv
* change sage and sgconv
* no degree check on gin
* add remainding API doc
* fix pylint
* infer fc_src and fc_dst, only one tensor for block
* fix pytest
2020-08-17 13:23:44 +08:00
f5eb80d221
[Feature] Edge DataLoader for edge classification & link prediction ( #1828 )
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* clean commit
* oops forgot the most important files
* use einsum
* copy feature from frontier to block
* Revert "copy feature from frontier to block"
This reverts commit 5224ec963eb6a3ef1b6ab74d8ecbd44e4e42f285.
* temp fix
* unit test
* fix
* revert jtnn
* lint
* fix win64
* docstring fixes and doc indexing
* revert einsum in sparse bidecoder
* fix some examples
* lint
* fix due to some tediousness in remove_edges
* addresses comments
* fix
* more jtnn fixes
* fix
2020-08-11 18:00:58 +08:00
264d96cdf5
[bugfix] Fix a bunch of examples to be compatible with dgl 0.5 ( #1957 )
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* upd
* upd
* upd
* upd
* upd
* upd
* fix pinsage also
* upd
* upd
* upd
Co-authored-by: Ubuntu <ubuntu@ip-172-31-29-3.us-east-2.compute.internal >
Co-authored-by: Quan Gan <coin2028@hotmail.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2020-08-08 01:31:23 +08:00
3611a66e06
Remove duplicate code of deepwalk ( #1965 )
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-87-240.ec2.internal >
2020-08-07 18:18:24 +08:00
4a8cc48981
fix bugs ( #1885 )
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Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
2020-08-04 09:10:51 +08:00
56339b34bf
[Fix] Update ogb examples according to new API. ( #1922 )
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* upd
* upd
Co-authored-by: Ubuntu <ubuntu@ip-172-31-29-3.us-east-2.compute.internal >
2020-08-03 23:08:50 +08:00
4f7bd0d0fb
[Example] Cluster Sage for ogb ( #1850 )
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* Cluster-Sage
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-186.ec2.internal >
Co-authored-by: Zihao Ye <expye@outlook.com >
2020-08-03 00:04:05 +08:00
34a067eaa0
[bugfix] Fix the memory leak issue of Cluster GAT under 0.5 kernel and simplify the bipartite GAT. ( #1908 )
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* uipd
* upd
* upd
* upd
* upd
2020-08-02 00:59:27 +08:00
8b64037eea
[Example] cluster-gat for ogb ( #1875 )
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* cluster-gat for ogb
* Fix new graph
* Inference using minibatch style
* update readme
* Update params
Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-186.ec2.internal >
Co-authored-by: Zihao Ye <expye@outlook.com >
2020-08-01 00:09:15 +08:00
44089c8b4d
[Refactor][Graph] Merge DGLGraph and DGLHeteroGraph ( #1862 )
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* Merge
* [Graph][CUDA] Graph on GPU and many refactoring (#1791 )
* change edge_ids behavior and C++ impl
* fix unittests; remove utils.Index in edge_id
* pass mx and th tests
* pass tf test
* add aten::Scatter_
* Add nonzero; impl CSRGetDataAndIndices/CSRSliceMatrix
* CSRGetData and CSRGetDataAndIndices passed tests
* CSRSliceMatrix basic tests
* fix bug in empty slice
* CUDA CSRHasDuplicate
* has_node; has_edge_between
* predecessors, successors
* deprecate send/recv; fix send_and_recv
* deprecate send/recv; fix send_and_recv
* in_edges; out_edges; all_edges; apply_edges
* in deg/out deg
* subgraph/edge_subgraph
* adj
* in_subgraph/out_subgraph
* sample neighbors
* set/get_n/e_repr
* wip: working on refactoring all idtypes
* pass ndata/edata tests on gpu
* fix
* stash
* workaround nonzero issue
* stash
* nx conversion
* test_hetero_basics except update routines
* test_update_routines
* test_hetero_basics for pytorch
* more fixes
* WIP: flatten graph
* wip: flatten
* test_flatten
* test_to_device
* fix bug in to_homo
* fix bug in CSRSliceMatrix
* pass subgraph test
* fix send_and_recv
* fix filter
* test_heterograph
* passed all pytorch tests
* fix mx unittest
* fix pytorch test_nn
* fix all unittests for PyTorch
* passed all mxnet tests
* lint
* fix tf nn test
* pass all tf tests
* lint
* lint
* change deprecation
* try fix compile
* lint
* update METIDS
* fix utest
* fix
* fix utests
* try debug
* revert
* small fix
* fix utests
* upd
* upd
* upd
* fix
* upd
* upd
* upd
* upd
* upd
* trigger
* +1s
* [kernel] Use heterograph index instead of unitgraph index (#1813 )
* upd
* upd
* upd
* fix
* upd
* upd
* upd
* upd
* upd
* trigger
* +1s
* [Graph] Mutation for Heterograph (#1818 )
* mutation add_nodes and add_edges
* Add support for remove_edges, remove_nodes, add_selfloop, remove_selfloop
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
* upd
* upd
* upd
* fix
* [Transfom] Mutable transform (#1833 )
* add nodesy
* All three
* Fix
* lint
* Add some test case
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* fix
* triger
* Fix
* fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
* [Graph] Migrate Batch & Readout module to heterograph (#1836 )
* dgl.batch
* unbatch
* fix to device
* reduce readout; segment reduce
* change batch_num_nodes|edges to function
* reduce readout/ softmax
* broadcast
* topk
* fix
* fix tf and mx
* fix some ci
* fix batch but unbatch differently
* new checkk
* upd
* upd
* upd
* idtype behavior; code reorg
* idtype behavior; code reorg
* wip: test_basics
* pass test_basics
* WIP: from nx/ to nx
* missing files
* upd
* pass test_basics:test_nx_conversion
* Fix test
* Fix inplace update
* WIP: fixing tests
* upd
* pass test_transform cpu
* pass gpu test_transform
* pass test_batched_graph
* GPU graph auto cast to int32
* missing file
* stash
* WIP: rgcn-hetero
* Fix two datasety
* upd
* weird
* Fix capsuley
* fuck you
* fuck matthias
* Fix dgmg
* fix bug in block degrees; pass rgcn-hetero
* rgcn
* gat and diffpool fix
also fix ppi and tu dataset
* Tree LSTM
* pointcloud
* rrn; wip: sgc
* resolve conflicts
* upd
* sgc and reddit dataset
* upd
* Fix deepwalk, gindt and gcn
* fix datasets and sign
* optimization
* optimization
* upd
* upd
* Fix GIN
* fix bug in add_nodes add_edges; tagcn
* adaptive sampling and gcmc
* upd
* upd
* fix geometric
* fix
* metapath2vec
* fix agnn
* fix pickling problem of block
* fix utests
* miss file
* linegraph
* upd
* upd
* upd
* graphsage
* stgcn_wave
* fix hgt
* on unittests
* Fix transformer
* Fix HAN
* passed pytorch unittests
* lint
* fix
* Fix cluster gcn
* cluster-gcn is ready
* on fixing block related codes
* 2nd order derivative
* Revert "2nd order derivative"
This reverts commit 523bf6c249bee61b51b1ad1babf42aad4167f206.
* passed torch utests again
* fix all mxnet unittests
* delete some useless tests
* pass all tf cpu tests
* disable
* disable distributed unittest
* fix
* fix
* lint
* fix
* fix
* fix script
* fix tutorial
* fix apply edges bug
* fix 2 basics
* fix tutorial
Co-authored-by: yzh119 <expye@outlook.com >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-7-42.us-west-2.compute.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal >
2020-07-28 14:30:41 +08:00
0fb615b9a6
[Example] Several updates on deepwalk ( #1845 )
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* fix bug
* fix bugs
* add args
* add args
* fix bug
* fix a typo
* results
* results
* results
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-07-22 23:26:30 +08:00
523fa4dfc2
Adding MWE-GCN for ogb/ogbn-proteins ( #1803 )
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* 07132020_cleaned
* Update README.md
* Create README.md
* Update README.md
* Update README.md
* further cleaning
* further cleaning
* Update README.md
* Update README.md
* Update README.md
* Update README.md
* Update README.md
* Update README.md
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-170.us-west-2.compute.internal >
Co-authored-by: Zihao Ye <expye@outlook.com >
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2020-07-20 22:23:13 +08:00
168a88e570
[Sampling] NodeDataLoader for node classification ( #1635 )
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* neighbor sampler data loader first commit
* more commit
* nodedataloader
* fix
* update RGCN example
* update OGB
* fixes
* fix minibatch RGCN crashing with self loop
* reverting gatconv test code
* fix
* change to new solution that doesn't require tf dataloader
* fix
* lint
* fix
* fixes
* change doc
* fix docstring
* docstring fixes
* return seeds and input nodes from data loader
* fixes
* fix test
* fix windows build problem
* add pytorch wrapper
* fixes
* add pytorch wrapper
* add unit test
* add -1 support to sample_neighbors & fix docstrings
* docstring fix
* lint
* add minibatch rgcn evaluations
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Tong He <hetong007@gmail.com >
2020-07-02 16:31:05 +08:00
c8ec6ee5cc
[Example] Experimental results of deepwalk on ogb datasets ( #1729 )
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* ogb-deepwalk
* ?
* ?
* remove pyg
2020-07-01 14:45:12 +08:00
7ee72b668e
[Example] Experimental results on ogbl-citation & ogbl-ppa ( #1711 )
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* ogb-deepwalk
* update readme
* update readme
* update readme
* update readme
* ogbl-ddi
* readme
* citation&ppa
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-06-28 11:37:01 +08:00
f9fd3107ae
[Example] Experimental results over ogbl-ddi ( #1707 )
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* ogb-deepwalk
* update readme
* update readme
* update readme
* update readme
* ogbl-ddi
* readme
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-06-27 14:01:44 +08:00
8d16d4bb6b
[Example] Test deepwalk on ogb leaderboard ( #1689 )
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* ogb-deepwalk
* update readme
* update readme
* update readme
* update readme
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2020-06-25 23:09:47 +08:00
8192b10b08
[Example] Sample-based GAT on ogbn-product dataset ( #1613 )
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* Add ogbn-product with GAT with GraphSAGE sampling
* Update Readme
* Add self loop
* update score
* Update score
* Fix
* Update
* upd
Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-186.ec2.internal >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Zihao Ye <expye@outlook.com >
2020-06-20 22:42:47 +08:00
ed60f40123
[Model] OGB products submission ( #1512 )
2020-05-12 16:01:28 +08:00
Mufei Li