mirrors / dmlc--dgl

文件历史

1,656 提交 34 分支 42 Git 标签
0.6.x
提交图

247 次代码提交

作者 SHA1 备注 提交日期
Akash Choudhuri 5906fa4ce0 [Doc] Made a spelling correction (#3503) 
Changed 'questios' to 'questions'
 2021-11-15 18:34:32 +08:00
Ruoyun Huang 5496a99d69 [Doc] Update distributed-preprocessing.rst (#2850) 2021-04-20 16:51:46 +08:00
Jialu Zhu f33f022626 Update message.rst (#2809) 2021-04-07 08:35:50 +00:00
Da Zheng e36c5db614 [Distributed] Simplify distributed API (#2775) 
* remove num_workers.

* remove num_workers.

* remove num_workers.

* remove num-servers.

* update error message.

* update docstring.

* fix docs.

* fix tests.

* fix test.

* fix.

* print messages in test.

* fix.

* fix test.

* fix.

Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal>
 2021-03-29 19:19:23 -07:00
Hengrui Zhang 1789972c4b [Bugfix] add default value for BlockSampler (#2771) 
* [Bugfix] add default value for BlockSampler

* [Doc] modify user_guide description about MultiLayerDropoutSample

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2021-03-22 14:02:27 +08:00
Da Zheng 17f863569e fix (#2744) 2021-03-21 22:38:55 -07:00
Hengrui Zhang a1f59c3b68 [Feature] QM9Edge Dataset Support (#2704) 
* [Feature] Support QM9Edge Datset

* Update qm9_edge.py

* disable tqdm

* Update qm9_edge.py

* Update qm9_edge.py

* Update qm9_edge.py

* Update qm9_edge.py

* Update qm9_edge.py

* Update qm9_edge.py

* Update qm9_edge.py

* remove preprocessing part

* add comparisons in qm9.py

* [docs] add qm9edge dataset

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2021-03-09 14:51:21 +08:00
Quan (Andy) Gan 99751d4960 [Doc] Rename block to message flow graph (#2702) 
* rename block to mfg

* revert

* rename
 2021-02-25 18:26:19 +08:00
Quan (Andy) Gan 71d53d9eef add thumbnails for tutorials (#2695) 
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2021-02-23 20:33:35 +08:00
Da Zheng 48a1794f85 [Doc] Fix the user guide for distributed partitioning. (#2684) 
* fix doc.

* explain the schema file.

* fix.
 2021-02-22 18:59:15 -08:00
Minjie Wang 8a07ab7737 [Doc] Tutorials re-organization (#2683) 
* reorg

* change titles

* rm some stale API doc; minor fix

* fix docs

* add warning

* rm new-tutorial run in ci

* lint
 2021-02-20 17:42:45 +08:00
Da Zheng 0fc649523b [Doc] Distributed heterogeneous graph training (#2654) 
* update DistGraph docstrings.

* add user guide.

* add doc string.

* fix.

* fix.

* fix.

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2021-02-19 10:48:05 -08:00
xiang song(charlie.song) 453d358d2c [Doc] Fix docs for sparse optimizer (#2680) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2021-02-19 14:07:35 +08:00
Quan (Andy) Gan 9e04a52abd [Doc] Reorganize tutorial (#2678) 2021-02-19 13:49:13 +08:00
Da Zheng e4ff484494 [Distributed] Distributed METIS partition (#2576) 
* add convert.

* fix.

* add write_mag.

* fix convert_partition.py

* write data.

* use pyarrow to read.

* update write_mag.py

* fix convert_partition.py.

* load node/edge features when necessary.

* reshuffle nodes.

* write mag correctly.

* fix a bug: inner nodes in a partition might be empty.

* fix bugs.

* add verify code.

* insert reverse edges.

* fix a bug.

* add get node/edge data.

* add instructions.

* remove unnecessary argument.

* update distributed preprocessing.

* fix readme.

* fix.

* fix.

* fix.

* fix readme.

* fix doc.

* fix.

* update readme

* update doc.

* update readme.

Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-202.us-west-1.compute.internal>
 2021-02-08 17:19:18 -08:00
Tong He 8ccb8206bf [Doc] Update docs to motivate the use of set_batch_num_nodes and set_batch_num_edges (#2630) 
* fix doc

* update docstring for transformation on batch graph

* update cn guide

* fix format

* update rst
 2021-02-08 14:43:24 +08:00
Quan (Andy) Gan 98ac391ed9 [Doc] Large graph training tutorials (#2595) 
* large graph training tutorials

* add full graph link prediction update

* fix

* fix

* fix

* addressed comments
 2021-02-07 17:55:49 +08:00
Mufei Li 3ca52b1e59 [Fix] Various Fix after Bug Bash (#2620) 
* update

* Misc fix

* Update
 2021-02-05 17:34:16 +08:00
Mufei Li b1840f49fa [Dataset] Change the Data Type of the Node Features in GINDataset/TUDataset from Float64 to Float32 (#2592) 
* Update

* Update

* Update

* update

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Tong He <hetong007@gmail.com>
 2021-02-03 21:00:45 +08:00
Quan (Andy) Gan 3a19bbc508 fix doc (#2604) 2021-02-02 11:04:43 +08:00
Minjie Wang 4ca706e1b4 [Doc] Update doc of dgl.function (#2585) 
* update doc of dgl.function

* small fix
 2021-01-28 16:32:18 +08:00
Zihao Ye 7bab1365e2 [feature] Supporting half precision floating data type (fp16). (#2552) 
* add tvm as submodule

* compilation is ok but calling fails

* can call now

* pack multiple modules, change names

* upd

* upd

* upd

* fix cmake

* upd

* upd

* upd

* upd

* fix

* relative path

* upd

* upd

* upd

* singleton

* upd

* trigger

* fix

* upd

* count reducible

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* only keep related files

* upd

* upd

* upd

* upd

* lint

* lint

* lint

* lint

* pylint

* upd

* upd

* compilation

* fix

* upd

* upd

* upd

* upd

* upd

* upd

* upd doc

* refactor

* fix

* upd number

Co-authored-by: Zhi Lin <linzhilynn@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-42-78.us-east-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-21-156.us-east-2.compute.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2021-01-28 11:21:58 +08:00
xiang song(charlie.song) a7e941c379 [Feature] Add support for sparse embedding (#2451) 
* Add sparse embedding for dgl and update rgcn example

* upd

* Fix

* Revert "Fix"

This reverts commit 4da87cdfb8b8c3506b7fc7376cd2385ba8045c2a.

* Fix

* upd

* upd

* Fix

* Add unitest and update impl

* fix

* Clean up rgcn example code

* upd

* upd

* update

* Fix

* update score

* sparse for sage

* remove model sparse

* upd

* upd

* remove global norm

* revert delete model_sparse.py

* update according to comments

* Fix doc

* upd

* Fix test

* upd

* lint

* lint

* lint

* upd

* upd

* clean up

Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal>
 2021-01-28 00:26:49 +08:00
Tong He 0855d25501 [NN] Support scalar edge weight for GraphConv, SAGEConv and GINConv (#2557) 
* add edge weight in forward

* fix lint

* fix

* fix

* address comments

* add utils

* add util to normalize in gcn way

* fix lint

* add unittest

* fix lint

* fix docstring

* fix docstring

* address comments

* improve notation consistence

* use preferred fn
 2021-01-26 23:34:12 +08:00
Quan (Andy) Gan 6c23fba8fa [Doc][Org] move edge_softmax to functional (#2442) 
* move edge_softmax to functional

* change examples

* fixes

* revert

* fix

* fix

* remove

* fix

* test

* add init

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2021-01-26 12:46:37 +08:00
Quan (Andy) Gan 2288098ba6 [Feature] Converting a block to a graph and allow block construction (#2555) 
* first commit

* more commit

* fix and docstring

* add to api reference

* address comments

* Update convert.py
 2021-01-24 12:44:54 +08:00
xnouhz 2c6d071617 [Feature] QM9 Dataset Support (#2521) 
* [Model] MixHop for Node Classification task

* [docs] update

* [docs] update

* [fix] remove seed option

* [fix] update readme

* [feature] support qm9 dataset

* [style] update

* [docs] fix the details

* [fix] indexing only support int

* [style] update

* [fix] multiple backends support

* [docs] add qm9

* [fix] Z type: float32 -> int32

* [fix] Z type: int32 -> long

* [docs] add ref

* [docs] fix

* [docs] update

* [docs] update

* [fix] test eval

* [docs] fix example

Co-authored-by: xnuohz@126.com <ubuntu@ip-172-31-44-184.us-east-2.compute.internal>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2021-01-21 01:33:30 +08:00
Jinjing Zhou 917a755291 [Fix] fix version check (#2544) 2021-01-19 19:35:43 +08:00
Mufei Li a6ec8480ef [Doc] Update FAQ (#2536) 2021-01-14 14:26:02 +08:00
Da Zheng 1db7588739 fix. (#2534) 
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2021-01-14 14:23:36 +08:00
zhjwy9343 c448e61b55 [Doc] CN User Guide Chapter 7 (#2481) 
* [Doc] Add Chapter 7

* [Doc] Add CN part 7, 7.1, 7.2, and 7.3

* [Doc] Add CN part 7, 7.1, 7.2, and 7.3

* [Doc] 1st round copyediting, 7, 7.1, 7.2, and 7.3, removing EN parts.

* [Doc] 2nd round copyediting.

* [Doc] 3rd round copyediting.

* [Doc] Copyedit with reviewers' comments.

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2021-01-13 19:28:20 +08:00
zhjwy9343 31f65f036a [Doc] user guide CN chapter 6 (#2452) 
* [Doc] Add 1st CN in chapter 6

* [Doc] Add 1st CN in chapter 6

* [Doc] Add 1st CN in chapter 6.1

* [Doc] Add 1st CN in chapter 6.1

* [Doc] Add 1st CN in chapter 6.2

* [Doc] Add CN in chapter 6.2

* [Doc] Add CN in chapter 6.3

* [Doc] Fix a code bug in chapter 6.3

* [Doc] Add CN in chapter 6.4, 6.5, and 6.6.

* [Doc] Add CN in chapter 6.4, 6.5, and 6.6，then remove EN parts.

* [Doc] revised 6.4, 6.5, and 6.6.

* [Doc] 2nd round of copyediting.

* Delete syn1.bin

Remove this unrelated file to this branch

* [Doc] Update guide_cn index.rst.

* [Doc] Update guide_cn index.rst.

* [Doc] Update guide_cn index.rst.

* [Doc] Update guide_cn index.rst.

* [Doc] Add chapter 7 in index page

* [Doc] edit chapter 6 in PR

* [Doc] edit chapter 6 in PR

* [Doc] Copyediting with Murphy and Minjie's comments.

* [Doc] Fix doc line in the previous chapters.

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2021-01-13 17:12:33 +08:00
Tong He a9f8f2589c [Doc] Update GraphDataLoader in our docs (#2504) 
* update graphdataloader in docs

* fix

* update examples

* fix sagpool

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2021-01-11 13:11:19 +08:00
Quan (Andy) Gan e018939729 [Tutorial] New tutorials for small graphs (#2482) 
* new tutorials for small graphs

* address changes and use GraphDataLoader

* fix and add data

* fix load_data

* style fixes

* Update 5_graph_classification.py
 2021-01-10 22:24:21 +08:00
Tong He e2e524df41 [Feature] Add GraphDataLoader implementation (#2496) 
* add graph dataloader

* add to doc

* fix

* fix

* fix docstring

* update according to torch default_collate

* add unittest

* fix

* fix lint

* fix
 2021-01-07 13:38:21 +08:00
Zihao Ye fa5f4d6aa7 [Doc] Hotfix on docstring of set_batch_num_edges (#2498) 2021-01-06 21:45:04 +08:00
Quan (Andy) Gan 4507bebc1a add compute_loss example in link prediction user guide (#2487) 2021-01-06 14:27:51 +08:00
Zihao Ye f960468f50 [feature] APIs for manually set batch_num_nodes and batch_num_edges (#2430) 
* wip

* udp

* upd

* fix typo

* lint

* lint

* upd

* upd

* lint

* lint

* upd

* upd

* tftest

* fix

* fallback numpy

* fix tf

* docstring

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2021-01-04 23:43:58 +08:00
Quan (Andy) Gan d696558b0b fix building script for tensoradapter on mac (#2472) 
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2021-01-02 02:59:14 +08:00
Quan (Andy) Gan 9a7235faf2 [Performance] Use allocator from PyTorch if possible (#2328) 
* first commit

* some thoughts

* move around

* more commit

* more fixes

* now it uses torch allocator

* fix symbol export error

* fix

* fixes

* test fix

* add script

* building separate library per version

* fix for vs2019

* more fixes

* fix on windows build

* update jenkinsfile

* auto copy built dlls for windows

* lint and installation guide update

* fix

* specify conda environment

* set environment for ci

* fix

* fix

* fix

* fix again

* revert

* fix cmake

* fix

* switch to using python interpreter path

* remove scripts

* debug

* oops sorry

* Update index.rst

* Update index.rst

* copies automatically, no need for this

* do not print message if library not found

* tiny fixes

* debug on nightly

* replace add_compile_definitions to make CMake 3.5 happy

* fix linking to wrong lib for multiple pytorch envs

* changed building strategy

* fix nightly

* fix windows

* fix windows again

* setup bugfix

* address comments

* change README
 2020-12-25 13:57:51 +08:00
Zihao Ye baace710cf [documentation] Improve the docstring of global pooling layer (#2437) 
* upd

* fix-link

* lint
 2020-12-21 10:12:54 +08:00
Mufei Li 492ad9be81 [Fix] Avoid Overloading Nonzero for PyTorch Backend (#2434) 
* Update gatedgraphconv.py

* Update entity_classify.py

* Update data-process.rst

* Update reading_data.py

* Update data-process.rst

* Update utils.py

* Update knowledge_graph.py

* Update entity_classify.py

* Update rdf.py

* Update entity_classify_mb.py

* Update test_classify.py

* Update tensor.py

* Update sparse.py

* Update entity_classify_mp.py

* Update 6_line_graph.py
 2020-12-20 13:12:17 +08:00
Tianjun Xiao 50f1f4ae78 Remove details about message passing optimization (#2425) 
* remove details about message passing optimization

* address comments
 2020-12-16 14:56:38 +08:00
Minjie Wang 8d0811385b [Doc] Update installation page 
Remove the out-dated part. Add a link to the get started page.
 2020-12-15 16:58:13 +08:00
zhjwy9343 dc072dca7d [Doc] Add User Guide CN index page (#2413) 
* [Doc] Add CN index page

* [Doc] Test table in contributor list

* [Doc] Test table in contributor list

* [Doc] Add table contents in contributor list

* [Doc] Add table contents in contributor list

* [Doc] Edit table contents in contributor list

* [Doc] Edit table contents in contributor list

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2020-12-10 12:39:54 +08:00
Quan (Andy) Gan 535aa3d33a [Doc]modify the wrong code in initialize the hetero_graph negative sampler (#2382) (#2411) 
* modify the wrong code in initialize the hetero_graph negative sampler

the etype in hetero graph should be name of edges
self.weights = {
            etype: g.in_degrees(etype=etype).float() ** 0.75
            for _, etype, _ in g.canonical_etypes
        }
the original code will give etype a Tuple format, it cannot apply to the next processing:
self.weights[etype].multinomial(len(src), replacement=True)
and I add the part which confusing me to generate eid_dict

* fix

Co-authored-by: Quan Gan <coin2028@hotmail.com>

Co-authored-by: Shaow <coco11563@yeah.net>
 2020-12-09 23:41:02 +08:00
zhjwy9343 35f27c73df [Doc] user guide Chinese chapter 5 (#2384) 
* [Doc] Add CN chapter 5

* [Doc] Add CN 5.1

* [Doc] Add CN 5.2, 5.3, and 5.4 raw text

* [Doc] Add CN 5.2, 5.3, and 5.4 raw text

* [Doc] Put 5.1 CN parts

* [Doc] Put 5.2，5.3, and 5.4 raw CN parts

* [Doc] Fix linkage bugs.

* [Doc] 1st round of copyediting, Chapter5, 5.1, and part of 5.2

* [Doc] 2nd round of copyediting, removing EN parts.

* [Doc] 2nd round of copyediting, removing EN parts.

* [Doc] 2nd round of copyediting, removing EN parts.

* [Doc] 2nd round of copyediting, removing EN parts.

* [Doc] 3rd round of copyediting.

* [Doc] 4th round of copyediting to Minjie's comments.

* [Doc] 4th round of copyediting to Minjie's comments.

* [Doc] 4th round of copyediting to Minjie's comments.

* [Doc] 4th round of copyediting to Minjie's comments.

* [Doc] 4th round of copyediting to Minjie's comments.

* [Doc] 4th round of copyediting to Minjie's comments.

* [Doc] 5th round of copyediting to Murphy's comments.
 2020-12-09 16:27:29 +08:00
Tong He 73a008d479 [Doc]Add example graph batch code to graph classification guide (#2401) 
* add example code to user guide

* improvement

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2020-12-08 17:01:15 +08:00
Xiangkun Hu fcf1193579 [Doc] Hidden implementations that may cause confusion to the user. (#2378) 
* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref

* modify the link of save_graphs and load_graphs in dataset user guide

* move image to s3 server.

* fix links and ref

* Hide implementations that may cause confusions to the user
 2020-12-03 13:09:19 +08:00
Quan (Andy) Gan 38077e298b installation and doc fix (#2379) 2020-11-30 19:47:40 +08:00