be444e52d9
[Doc/Feature] Refactor, doc update and behavior fix for graphs ( #1983 )
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* Update graph
* Fix for dgl.graph
* from_scipy
* Replace canonical_etypes with relations
* from_networkx
* Update for hetero_from_relations
* Roll back the change of canonical_etypes to relations
* heterograph
* bipartite
* Update doc
* Fix lint
* Fix lint
* Fix test cases
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Fix test
* Fix
* Update
* Use DGLError
* Update
* Update
* Update
* Update
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Fix
* Fix
* Update
* Update
* Update
* Update
* Update
* Update
* rewrite sanity checks
* delete unnecessary checks
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Fix
* Update
* Update
* Update
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Fix
* Update
* Fix
* Update
* Fix
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
Co-authored-by: Quan Gan <coin2028@hotmail.com >
2020-08-18 04:26:29 +08:00
68a978d4de
[Model] Fixes JTNN for 0.5 ( #1879 )
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* jtnn and fixes
* make metagraph a method
* fix test
* fix
2020-07-30 13:36:08 +08:00
44089c8b4d
[Refactor][Graph] Merge DGLGraph and DGLHeteroGraph ( #1862 )
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* Merge
* [Graph][CUDA] Graph on GPU and many refactoring (#1791 )
* change edge_ids behavior and C++ impl
* fix unittests; remove utils.Index in edge_id
* pass mx and th tests
* pass tf test
* add aten::Scatter_
* Add nonzero; impl CSRGetDataAndIndices/CSRSliceMatrix
* CSRGetData and CSRGetDataAndIndices passed tests
* CSRSliceMatrix basic tests
* fix bug in empty slice
* CUDA CSRHasDuplicate
* has_node; has_edge_between
* predecessors, successors
* deprecate send/recv; fix send_and_recv
* deprecate send/recv; fix send_and_recv
* in_edges; out_edges; all_edges; apply_edges
* in deg/out deg
* subgraph/edge_subgraph
* adj
* in_subgraph/out_subgraph
* sample neighbors
* set/get_n/e_repr
* wip: working on refactoring all idtypes
* pass ndata/edata tests on gpu
* fix
* stash
* workaround nonzero issue
* stash
* nx conversion
* test_hetero_basics except update routines
* test_update_routines
* test_hetero_basics for pytorch
* more fixes
* WIP: flatten graph
* wip: flatten
* test_flatten
* test_to_device
* fix bug in to_homo
* fix bug in CSRSliceMatrix
* pass subgraph test
* fix send_and_recv
* fix filter
* test_heterograph
* passed all pytorch tests
* fix mx unittest
* fix pytorch test_nn
* fix all unittests for PyTorch
* passed all mxnet tests
* lint
* fix tf nn test
* pass all tf tests
* lint
* lint
* change deprecation
* try fix compile
* lint
* update METIDS
* fix utest
* fix
* fix utests
* try debug
* revert
* small fix
* fix utests
* upd
* upd
* upd
* fix
* upd
* upd
* upd
* upd
* upd
* trigger
* +1s
* [kernel] Use heterograph index instead of unitgraph index (#1813 )
* upd
* upd
* upd
* fix
* upd
* upd
* upd
* upd
* upd
* trigger
* +1s
* [Graph] Mutation for Heterograph (#1818 )
* mutation add_nodes and add_edges
* Add support for remove_edges, remove_nodes, add_selfloop, remove_selfloop
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
* upd
* upd
* upd
* fix
* [Transfom] Mutable transform (#1833 )
* add nodesy
* All three
* Fix
* lint
* Add some test case
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* fix
* triger
* Fix
* fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
* [Graph] Migrate Batch & Readout module to heterograph (#1836 )
* dgl.batch
* unbatch
* fix to device
* reduce readout; segment reduce
* change batch_num_nodes|edges to function
* reduce readout/ softmax
* broadcast
* topk
* fix
* fix tf and mx
* fix some ci
* fix batch but unbatch differently
* new checkk
* upd
* upd
* upd
* idtype behavior; code reorg
* idtype behavior; code reorg
* wip: test_basics
* pass test_basics
* WIP: from nx/ to nx
* missing files
* upd
* pass test_basics:test_nx_conversion
* Fix test
* Fix inplace update
* WIP: fixing tests
* upd
* pass test_transform cpu
* pass gpu test_transform
* pass test_batched_graph
* GPU graph auto cast to int32
* missing file
* stash
* WIP: rgcn-hetero
* Fix two datasety
* upd
* weird
* Fix capsuley
* fuck you
* fuck matthias
* Fix dgmg
* fix bug in block degrees; pass rgcn-hetero
* rgcn
* gat and diffpool fix
also fix ppi and tu dataset
* Tree LSTM
* pointcloud
* rrn; wip: sgc
* resolve conflicts
* upd
* sgc and reddit dataset
* upd
* Fix deepwalk, gindt and gcn
* fix datasets and sign
* optimization
* optimization
* upd
* upd
* Fix GIN
* fix bug in add_nodes add_edges; tagcn
* adaptive sampling and gcmc
* upd
* upd
* fix geometric
* fix
* metapath2vec
* fix agnn
* fix pickling problem of block
* fix utests
* miss file
* linegraph
* upd
* upd
* upd
* graphsage
* stgcn_wave
* fix hgt
* on unittests
* Fix transformer
* Fix HAN
* passed pytorch unittests
* lint
* fix
* Fix cluster gcn
* cluster-gcn is ready
* on fixing block related codes
* 2nd order derivative
* Revert "2nd order derivative"
This reverts commit 523bf6c249bee61b51b1ad1babf42aad4167f206.
* passed torch utests again
* fix all mxnet unittests
* delete some useless tests
* pass all tf cpu tests
* disable
* disable distributed unittest
* fix
* fix
* lint
* fix
* fix
* fix script
* fix tutorial
* fix apply edges bug
* fix 2 basics
* fix tutorial
Co-authored-by: yzh119 <expye@outlook.com >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-7-42.us-west-2.compute.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal >
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal >
2020-07-28 14:30:41 +08:00
32ea1b20ef
remove edge list creation ( #1688 )
2020-06-23 21:48:09 +08:00
cfb24790ba
[hotfix] Several bug fix for remove nodes/edges in DGLGraph. ( #1521 )
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* upd
* upd
* better
2020-05-15 02:29:44 +08:00
67cb7a43a0
[Feature] Deprecate multigraph ( #1389 )
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* Deprecate multi-graph
* Handle heterograph and edge_ids
* lint
* Fix
* Remove multigraph in C++ end
* Fix lint
* Add some test and fix something
* Fix
* Fix
* upd
* Fix some test case
* Fix
* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2020-03-28 21:31:24 +08:00
2cdc4d3c1d
[Doc] Patch tutorial ( #1380 )
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* patched 1_first
* done 2_basics
* done 4_batch
* done 1_gcn, 9_gat, 2_capsule
* 4_rgcn.py
* revert
* more fix
2020-03-22 10:21:22 +08:00
c23a61bd5c
fix s3 link ( #1310 )
2020-03-04 21:01:29 +08:00
5967d81782
[Doc] Re-organize API docs and tutorials ( #1222 )
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* reorg tutorials and api docs
* fix
2020-01-26 21:26:34 +08:00
17aab8128a
[Doc] update working with multiple backend section ( #1128 )
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* update work with different backend section
* fix some warnings
* Update backend.rst
* Update index.rst
Co-authored-by: VoVAllen <VoVAllen@users.noreply.github.com >
2019-12-24 17:32:56 +08:00
7911dc8332
[Doc] Edit for grammar and style ( #987 )
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* Edit for grammar and style
As with other tutorials, it would help the reader if you add a paragraph in the opening section about assumptions or prerequisites.
Does this refer to SageMaker Ground Truth feature? "...assigns its ground truth label..." If yes, phrase it thus: assigns its Amazon SageMaker Ground Truth label
* Update tutorials/basics/4_batch.py
* Update tutorials/basics/4_batch.py
* Update tutorials/basics/4_batch.py
topologies
* Update tutorials/basics/4_batch.py
Co-Authored-By: Aaron Markham <markhama@amazon.com >
2019-11-27 13:56:11 +08:00
409183bc56
[Doc] Edit for grammar and style ( #986 )
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Can you add a link for the download to this sentence: You can also `download <location?>` and run the different code examples...
As with other tutorial topics, it would be helpful to add your assumptions or information in the opening section about prerequisites.
2019-11-21 14:04:20 +08:00
d2afe65ca8
[Doc] Edit for grammar and style ( #985 )
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* Edit for grammar and style
In the opening paragraph, it would be helpful to provide some overall scenario and the prerequisites you expect readers to have completed before they start here. "This tutorial assumes you have already..." Add a link to Install DGL topic perhaps and any other framework or IDE or even specialized knowledge. With this context, you help readers to succeed by setting expectations.
Better to group all tutorials (this, PageRank with, Batched Graph, Working with) at the same level in the left navigation rail and all as subsections of DGL Basics.
* Update tutorials/basics/2_basics.py
2019-11-20 12:03:18 +08:00
8d84865548
Voice and tone updates for readability ( #938 )
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Simple editorial updates
2019-10-21 09:06:56 +08:00
ebbb6296f9
[Doc] doc page for builtin functions ( #642 )
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* doc page for builtin functions; install from source doc
* upload rst
* update
2019-06-10 18:29:28 -04:00
dedfd908c6
[Fix] Fix link in batched graph blog ( #367 )
2019-01-26 11:04:05 -05:00
3cbfc25a32
[Tutorial] Batched Graph Classification ( #360 )
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* batched_graph_classification
* Fix
* Fix
* update tutorial with new dataset
* Final
* Fix doc for dataset
* small fix
2019-01-25 15:13:52 -05:00
707334ce85
minor spelling tweaks ( #349 )
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* minor spelling tweaks
* Update CONTRIBUTORS.md
2019-01-10 12:02:31 -05:00
6f9ae8d61e
[Doc] main doc page update and contribute guide ( #336 )
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* reorg the doc mainpage
* contribute guide
2019-01-04 17:02:37 -05:00
97a7dd11b2
Update README.txt ( #327 )
2018-12-26 16:07:19 +08:00
16cc528757
[Doc] Improve Capsule with Jinyang & Fix wrong tutorial level layout ( #236 )
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* improve capsule tutorial with jinyang
* fix wrong layout of second-level tutorial
* delete transformer
2018-12-04 10:46:49 -05:00
Mufei Li