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作者 SHA1 备注 提交日期
Quan Gan 67ce182f7a update version 2020-11-27 04:01:44 +00:00
Quan (Andy) Gan 2fedc4d16a [Performance] Accelerate batching (#2363) 
* speed up batching

* more fix

* lint

* fix
 2020-11-27 03:21:18 +00:00
Zihao Ye 21946df028 Remove redundant print information in #2361 (#2362) 2020-11-27 03:21:04 +00:00
Zihao Ye faf8c71163 [Performance] Use segment operators for graph readout. (#2361) 
* upd

* upd

* update

* upd

* upd

* upd

* fix

* lint

* lint

* pylint

* doc
 2020-11-27 03:21:04 +00:00
Mufei Li 4fd5e027e4 [WIP] Misc Fix (#2359) 
* Update

* Update

* Update
 2020-11-27 03:20:50 +00:00
vill e5a5a20b7a Update knowledge_graph.py (#2329) 
The l in "bool" is lost.

Co-authored-by: Zihao Ye <expye@outlook.com>
 2020-11-27 03:20:07 +00:00
Mufei Li 865933b760 Update appnpconv.py (#2324) 2020-11-27 03:20:07 +00:00
Minjie Wang 91ade38a25 [CUDA] Add CUDA11 support (#2308) 
* add support for cuda 11

* fix inc bug in pytorch 1.8

* poke ci

* fix

* small fix

* try fix

* try fix

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2020-11-27 03:20:07 +00:00
Xiangkun Hu 317be7f188 [Bugfix] GINDataset check whether labels are all valid (#2319) 
* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* check whether the original labels are valid

* add unit test for gin dataset

* bug of asscalar in mxnet<=1.6

* mxnet<=1.6 asscalar requires ndarray to be shaped (1,)

* skip gpu while testing datasets

* Update test_data.py

* test of gin dataset takes too much time
 2020-11-27 03:17:22 +00:00
nv-dlasalle 3d99b0080b [Performance] In HeteroNodeView, build arange on target device, instead of on CPU and copying it (#2266) 
* Build arange on target device

* Utilize arange device in viewpy:HeteroNodeView.__call__

* Work around uint64 error in TF to_dlpack

* Restore else clause

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Da Zheng <zhengda1936@gmail.com>
 2020-11-27 03:17:22 +00:00
chwan-rice 9e9fcdb32f [Fix] typo (#2265) 
* upd

* upd

* upd

* upd

* upd

* fix OpenMP compatibility issues

* typo

* partition

* misc

* fix typo

* num_parts=1

* import torch

* long

* print info

* print info

* print info

* upd

* remove debug code

* revert partition.py

* fix cut count

* fix cut count

* Revert "fix cut count"

This reverts commit 10926b4fd48f45c8f1ddb58be7db6c22e653effd.

* Revert "fix cut count"

This reverts commit 76465283bef093a2b4209ad70dd15d2437b2ec8a.

* type of deprecate

* typo in deprecate info

* fix typo

* use cv for partitioning

* CE

* no message

* revert

* typo

* no message

* no message

* no message

* practice

* dmlc-core

* DGLGraph

Co-authored-by: yzh119 <expye@outlook.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2020-11-27 03:17:12 +00:00
ZenoTan 59b20808e0 Fix typos (#2285) 2020-11-27 03:17:12 +00:00
nv-dlasalle 24d25d0a7f [Bugfix][Performance] Fix Column to copy 'self.index' to location of 'self.storage' only on read, and use kwargs. (#2267) 
* Pass framework arguments to copy of frames

* Copy for subframe

* Fix mismatched contexts

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2020-11-27 03:17:12 +00:00
Sami Issaadi d1add2ebee [bugfix] Fix crash due to unfound attribute (#2262) 
An unexpected `AttributeError` exception is launched whenever the user defines `save_dir` on `DGLDataset` instantiation and uses `self._save_dir`  within `has_cache` method.
This commit fixes the issue.
 2020-11-27 03:17:12 +00:00
Zihao Ye 3f994308c0 [bugfix] Fix the behavior of min/max reducer for 1-dim dta. (#2250) 
* udp

* add test

* udp

* fix mxnet
 2020-11-27 03:17:12 +00:00
Junki Ishikawa 694c2b177b Fix typo (#2235) 
Co-authored-by: Chao Ma <mctt90@gmail.com>
 2020-11-27 03:17:11 +00:00
Mingjian Wen ef74721896 Fix segment_reduce() ignoring tailing 0 segments (#2228) 
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2020-11-27 03:17:11 +00:00
Mufei Li 26757bd383 [HeteroGraph] Fix the failure of apply_nodes when the input function changes feature size for all nodes (#2223) 
* Fix

* Fix
 2020-11-27 03:17:11 +00:00
Quan (Andy) Gan e4cccdda34 [Doc] fix typos in PyTorch DataLoaders (#2216) 
* fix doc

* fix doc
 2020-11-27 03:17:11 +00:00
Mufei Li 879fe6f990 Update gindt.py (#2212) 2020-11-27 03:17:11 +00:00
Mufei Li ad6b215bbd [Doc and User Guide] Minor Fix (#2206) 
* [Distributed Example] Check args.num_servers with DGL_NUM_SERVER (#2203)

* update

* update

* update

* Fix doc and user guide

* Update heterograph.py

Co-authored-by: Chao Ma <mctt90@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-13-9.us-west-2.compute.internal>
 2020-09-17 02:59:55 +08:00
Quan Gan 76de9ae2ba Merge branch 'master' into 0.5.x 2020-09-13 18:25:29 +08:00
Quan (Andy) Gan 76d66fd35d [Bug] Fix dtype mismatch in EdgeDataLoader on Windows (#2188) 
* fix node and edge dataloader on windows

* fix distributed
 2020-09-13 18:25:05 +08:00
Quan Gan 1998335919 update version 2020-09-13 12:46:13 +08:00
Quan Gan dd6d0b6eb7 Merge branch 'master' into 0.5.x 2020-09-13 12:45:27 +08:00
Mufei Li 877101a96b [Doc] Update Doc for UDFs (#2131) 
* Update Doc for UDFs

* add degree bucketing explanation

* Update udf.rst

* Update

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2020-09-13 04:57:06 +08:00
Jinjing Zhou 3234189b60 Fix hdfs error when writing big data (#2186) 
* update dmlc-core to latest

* fix hdfs
 2020-09-12 23:58:36 +08:00
Quan (Andy) Gan 4dae26a1fc [Doc] Fix typo in dataloading.negative_sampler (#2177) 
* fix dataloading docs

* fix another
 2020-09-11 19:39:48 +08:00
Quan (Andy) Gan 7d8522a29f [Bug] fix cumsum on an empty array with prepend_zero returning an empty array (#2179) 
* fix cumsum

* udp

Co-authored-by: Zihao <expye@outlook.com>
 2020-09-11 18:23:44 +08:00
Henry Kenlay 8a227bfa03 [Bugfix] fix TUDataset labelling issue (#2165) (#2173) 
* [Bugfix] fix TUDataset labelling issue (#2165)

* [Bugfix] fix TUDataset labelling issue (dmlc#2165)

* update docstring according to discussion

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2020-09-11 17:05:24 +08:00
Xiangkun Hu a102db23bf [Dataset] CoraFull dataset remove redundant reference (#2172) 
* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* Update gnn_benckmark.py
 2020-09-11 15:15:06 +08:00
Quan (Andy) Gan 8f4594074b [Hotfix] Fix degree bucket edge ordering (#2176) 
* fix degree bucket edge ordering

* unit test

* fix
 2020-09-11 14:16:52 +08:00
Zihao Ye cbd55eb12f [performance] Batch DGLGraph in C++ end. (#2155) 
* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* fix

* upd

* upd

* upd

* upd

* fix

* upd

Co-authored-by: VoVAllen <jz1749@nyu.edu>
 2020-09-11 02:54:27 +08:00
Quan (Andy) Gan ac570c1dae [Bugfix] Fix flatten not wrapping unit graph (#2170) 
* fix flatten not wrapping unit graph

* fix doc
 2020-09-10 17:41:52 +08:00
Quan (Andy) Gan 5f44a4efce Fix #1453 again (#2169) 
* Fix reincarnation of #1453

* fix
 2020-09-10 15:43:21 +08:00
Quan (Andy) Gan b10b541c11 fix multiple docstring inconsistencies (#2167) 2020-09-10 11:03:34 +08:00
Zihao Ye 45b610c49a fix edge_softmax (#2160) 
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
 2020-09-09 14:19:43 +08:00
xiang song(charlie.song) 0cf99be378 hotfix (#2163) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal>
 2020-09-09 11:00:31 +08:00
xiang song(charlie.song) c9c6171b9f Revert "[Feature] Basic utils to handle raw data features (#2102)" (#2147) 
This reverts commit 33a8bb93bf.

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
 2020-09-08 10:33:59 +08:00
Quan (Andy) Gan ac5c79cdb8 [Bug] Fixes issues in feature pickling and transmission for subgraphs and blocks (#2139) 
* bug fixes

* remove __deepcopy__; not sure what the behavior should be

* lint

* skip gpu test

* fix

* fix dist dataloader

* add comment

* remove assert
 2020-09-03 12:48:59 +08:00
Quan Gan 93814287bc update version 2020-08-30 01:52:23 +00:00
Quan Gan 5e605f8d75 patch release 2020-08-29 14:51:13 +00:00
Quan Gan b1ffc504be Merge branch 'master' into 0.5.x 2020-08-29 14:50:55 +00:00
Quan (Andy) Gan 9eaace9216 rename create_format_ to create_formats_ (#2126) 2020-08-29 22:49:27 +08:00
Mufei Li 642bdbaf04 [Traversal] Fall back to CPU for Graph Traversal as a Workaround (#2115) 
* workaround

* Allow Test for Traversal on GPU Graphs

Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2020-08-29 16:34:31 +08:00
xiang song(charlie.song) 0435b74c48 [Hotfix] Fix layer norm (#2119) 
* hotfix

* Fix Layer Norm

Co-authored-by: Ubuntu <ubuntu@ip-172-31-87-240.ec2.internal>
 2020-08-28 11:20:33 +08:00
xiang song(charlie.song) 33a8bb93bf [Feature] Basic utils to handle raw data features (#2102) 
* add feature utils and add test for feature norm

* Add docstring and test

* upd

* dis able some test

* Update

* update doc string

* update

Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal>
 2020-08-27 11:36:39 +08:00
xiang song(charlie.song) b2ac89f2e4 [Bugfix] Fix #2076 (#2111) 
* Fix

* Revert "Fix"

This reverts commit 2627630daee33a709a70ef87e1ad9930772430a8.

* Fix

* upd

Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal>
 2020-08-27 00:23:31 +08:00
Jinjing Zhou 51ba662169 Fix GINDT and #2087 (#2103) 
* fix gindt

* ff

* fix

* minor fix

* fix
 2020-08-26 15:53:45 +08:00
Quan Gan a71cd8f84e Merge branch 'master' into 0.5.x 2020-08-24 16:05:54 +08:00