e590feeb62
[Model Zoo] GAT on Tox21 ( #793 )
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* GAT
* Fix mistake
* Fix
* hotfix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Update
* Update
* Fix style
* Hotfix
* Hotfix
* Hotfix
* Fix
* Fix
* Update
* CI trial
* Update
* Update
* Update
2019-08-28 04:47:16 +08:00
3bc73931f8
[Model Zoo] Molecule Regression ( #779 )
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* [Model] MPNN
* [Model] MPNN 🔨 reorganize the mpnn/sch/mgcn model & alchemy dataset
* [Model] MPNN alchemy dataloader refactoring
* [Model] Chem model zoo minor change
* [Model] Chem Model Zoo 🔥 remove old samples
* [Model Zoo] molecule regression minor change
* Fix dataset import
* Fix dataset import
* [Model Zoo] molecule regression test set
* [Model Zoo] molecule prediction MPNN model hyperparameter tuning
* [Model Zoo] molecule prediction ✏️ mpnn performance update
2019-08-26 17:42:33 +08:00
2ee3c78c7c
[Dataset] Tox21 ( #760 )
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* tox21
* fix ci
* fix ci
* fix urls to url
* add doc
* remove binary
2019-08-14 16:55:01 +08:00
8c79885d8b
[BUGFIX] fix the error message in the data loader. ( #509 )
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* fix.
* Change to required=True
* Update description
* Change back
2019-04-26 09:52:45 +09:00
a3febc061b
[Model] Add GIN Model ( #471 )
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* add gin model
* convert dataset.py to data_ont_the_fly way and put it into dgl.data module
* convert dataset.py to data_ont_the_fly way and put it into dgl.data module
python code checked
* modified document and reference TUDataset; checked python part and bypass cpp part due to error
* change tensor to numpy in dataset and transform in collate@Dataloader
* Change minor format issue
Change minor format issue
* moved logging; adjusted tqdm etc
2019-04-17 14:57:07 +08:00
00fc680aae
[Dataset] Add TUDataset ( #473 )
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* add graph classification dataset
* add node label
* add TUDataset
* Modify to consistent with Qi Huang's implementation
* add docs
* Add docs
* Fix change of environment variable
* Update tu.py
* Update tu.py
* Fix error when add node with np.int64
2019-04-10 09:37:53 -04:00
788d8dd4ad
[Model]PPI dataloader and inductive learning script. ( #395 )
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* Create ppi.py
* Create train_ppi.py
* Update train_ppi.py
* Update train_ppi.py
* Create gat.py
* Update train.py
* Update train_ppi.py
* Update ppi.py
* Update train_ppi.py
* Update ppi.py
* Update train_ppi.py
* Update train_ppi.py
* Update ppi.py
* Update train_ppi.py
* update docs and readme
2019-02-17 16:41:30 -05:00
51293a3273
[Data] reddit data loader ( #372 )
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* reddit data loader
* upload to S3
* update
* add self loop
* address comments
* fi
2019-02-08 10:53:39 -08:00
abf12fc757
[Data] Synthetic dataset for graph classificaiton ( #364 )
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* minigc dataset
* more comments
* sphinx
2019-01-25 10:47:47 -05:00
b1e8d95e99
[Doc] LGNN tutorial ( #210 )
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* tutorial notebook added
* lg tutorial cleaned up
* dataset scaffold
* move dataloader to data
* fix model
* remove todo
* utils seperated
* [model]line graph new implementation + tutorial + binary sub graph dataset
* [tutorial] line graph sphinx scaffold
* [tutorial] lgnn tutorial improved
* [tutorial] remove notebook
* [tutorial] fix lg and gcn links
* [tutorial] fix random seed
* [tutorial]fix
* WIP
* code refactor done
* new mini dataset; remove utils code
* fix
* word fix
* fix link
* minor fix
* minor fix
* minor fix
2018-12-03 17:59:50 -05:00
2389df8155
[API] Subgraph sampling API. ( #138 )
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* add neighbor sampler.
* fix sampler.
* handle non-existing nodes differently in MapParentIdToSubgraphId.
* fix sampling tests.
* parallelize sampling.
* add more tests.
* fix a bug in subgraph loader.
* get number of sampled nodes directly.
* load mxnet CSR to DGLGraph directly.
* create graph from mxnet csr array directly.
* use subgraph loader in SSE.
* fix a bug in sampling.
* output framework tensor.
* fix.
* remove unnecessary code.
* fix tests.
* add SSE README.
* move to contrib.
* address comments.
* add tests.
2018-11-14 13:51:27 -08:00
cc372e3774
sbm mixture
2018-10-04 21:22:41 +08:00
b7eb16595f
Fix 0deg update_to and Tree-LSTM model ( #51 )
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* WIP
* WIP
* treelstm dataloader
* Main training loop.
* trainable treelstm script
* fix dependency
* cuda training
* Add tensorized topological traversal
* allowing update_to() with no incoming messages
* fixing partial cases
2018-08-28 11:57:08 -04:00
0a78dbe12a
Three DGL-GCN implementations ( #35 )
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* synthetic dataset
* some fix
* gcn readme
2018-08-07 15:26:58 -04:00
2c489fadec
SPMV specialization ( #32 )
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* fix edge list order problem in cached graph.
* minor fix
* fix bug in edge iter
* SPMV works
* gcn spmv on CPU
* change gcn style
* fix cached graph performance; fixed gcn dataset bug
* reorg dir
* non-batch spmv; partial update problem with shape change
* fix reorder problem; finish gcn-batch impl
* pop API
* GPU context
2018-08-06 14:00:06 -04:00
Mufei Li