文件历史

23 次代码提交

作者 SHA1 备注 提交日期
Zihao Ye 9314aabd1f [Refactor] Interface of nn modules (#798)
* refactor

* upd mpnn
2019-08-27 22:29:25 +08:00
Zihao Ye 650f6ee1e0 [NN] Add commonly used GNN models from examples to dgl.nn modules. (#748)
* gat

* upd

* upd sage

* upd

* upd

* upd

* upd

* upd

* add gmmconv

* upd ggnn

* upd

* upd

* upd

* upd

* add citation examples

* add README

* fix cheb

* improve doc

* formula

* upd

* trigger

* lint

* lint

* upd

* add test for transform

* add test

* check

* upd

* improve doc

* shape check

* upd

* densechebconv, currently not correct (?)

* fix cheb

* fix

* upd

* upd sgc-reddit

* upd

* trigger
2019-08-27 18:21:19 +08:00
Chao Ma f99725adbc all demo use python-3 (#555) 2019-05-23 10:38:05 +08:00
Hao Zhang 039a711da1 [Model] fix self-edge bug in GCN and GAT. (#482)
* Update gcn_mp.py

* Update train.py

* Update train.py

* Update train.py

* Update gat_batch.py

* Update gat_batch.py

* Update gcn_mp.py
2019-04-10 09:04:19 -04:00
Da Zheng 4ea42e3e08 fix gcn. (#469) 2019-04-05 10:56:09 -07:00
Minjie Wang 565f0c88fc [WIP] [NN] Refactor NN package (#406)
* refactor graph conv

* docs & tests

* fix lint

* fix lint

* fix lint

* fix lint script

* fix lint

* Update

* Style fix

* Fix style

* Fix style

* Fix gpu case

* Fix for gpu case

* Hotfix edgesoftmax docs

* Handle repeated features

* Add docstring

* Set default arguments

* Remove dropout from nn.conv

* Fix

* add util fn for renaming

* revert gcn_spmv.py

* mx folder

* fix wierd bug

* fix mx

* fix lint
2019-02-25 18:41:21 -05:00
Giuseppe Futia 6c3dba867a [Tutorial] Update prerequisites of README (#380)
* Update prerequisites of README

* dependencies for pytorch models

* dependencies for mxnet models

* minor
2019-02-11 22:58:17 -05:00
Minjie Wang ddc2faa547 [Bugfix] Fix gat residual bug (#355)
* fix gat residual bug

* fix the residual addition; output heads; add some shape notations;

* minor

* fix the output head average

* add requests package in requirement
2019-01-12 08:37:01 -05:00
Minjie Wang f35ac5443e [Graph][Model] Cache adj & inc; MX GCN (#307)
* add cache to adj and incmat

* Fix bug in cached adj/inc

* mx gcn spmv runnable; acc debugging...

* fix bug in mx gcn that loss is not correctly calculated

* fix mx utest

* fix as requested

* use raw parameter tensors rather than dense layer

* fix dropout

* Add numbers in readme
2018-12-16 22:51:01 -05:00
Ziyue Huang cffa4034f5 [Model] fix GCN (#305)
* mxnet gcn spmv

* update readme

* fix gcn

* pytorch gcn

* update readme
2018-12-16 12:44:41 -05:00
Minjie Wang e557ed89ff [Doc][Model] example folder doc and model summary (#259)
* update example readme

* mx example readme

* add results in readme

* mx rgcn readme
2018-12-05 14:35:14 -05:00
Lingfan Yu 378c264561 [Model] Fix GCN Normalization (#249)
* WIP

* lr -> 0.01

* new cora dataset

* normalization code

* minor format change

* normalization factor for deg bucket
2018-12-05 12:32:10 -05:00
Da Zheng 78269cedfd [Doc] Update GCN README.md (#224)
* update readme.

* update readme
2018-12-04 12:07:05 -05:00
Minjie Wang b355d1eddf [API] Apply nodes & apply edges (#117) 2018-11-04 01:22:53 -04:00
Minjie Wang 68ec624782 [API][Doc] API change & basic tutorials (#113)
* Add SH tutorials

* setup sphinx-gallery; work on graph tutorial

* draft dglgraph tutorial

* update readme to include document url

* rm obsolete file

* Draft the message passing tutorial

* Capsule code (#102)

* add capsule example

* clean code

* better naming

* better naming

* [GCN]tutorial scaffold

* fix capsule example code

* remove previous capsule example code

* graph struc edit

* modified:   2_graph.py

* update doc of capsule

* update capsule docs

* update capsule docs

* add msg passing prime

* GCN-GAT tutorial Section 1 and 2

* comment for API improvement

* section 3

* Tutorial API change (#115)

* change the API as discusses; toy example

* enable the new set/get syntax

* fixed pytorch utest

* fixed gcn example

* fixed gat example

* fixed mx utests

* fix mx utest

* delete apply edges; add utest for update_edges

* small change on toy example

* fix utest

* fix out in degrees bug

* update pagerank example and add it to CI

* add delitem for dataview

* make edges() return form that is compatible with send/update_edges etc

* fix index bug when the given data is one-int-tensor

* fix doc
2018-11-02 17:19:14 -04:00
Mufei Li 2758c24955 [NN] Fix GCN module (#99)
1. Update `examples/pytorch/gcn` and `python/dgl/nn/pytorch` based on the latest APIs
2. Add full support for dropout in `examples/pytorch/gcn` and `python/dgl/nn/pytorch`
3. Rename `GCN` class in `python/dgl/nn/pytorch` to be `GraphConvolutionLayer` class
4. Make node field an argument that can be configured by users in GraphConvolutionLayer

Note that adjacency normalization has not been supported yet in the examples.
2018-10-28 04:35:33 +08:00
Minjie Wang 3e76bcc052 remove anonymous repr 2018-10-18 21:43:40 -04:00
Minjie Wang b9631912db [Frame] Refactor frame. (#85)
* refactor frame codes

* fix unit test

* fix gcn example

* minor doc/message changes

* raise errors for non-exist columns in FrameRef; sanity check when append

* fix unittest; change error msg

* Add warning for none initializer

* fix unittest

* use warnings package
2018-10-18 15:08:21 -04:00
Minjie Wang fde4f581d2 gcn runnable 2018-10-03 21:05:19 -04:00
Minjie Wang 61fa3c6cf5 Builtin function and API changes (#53)
* WIP: API renaming

* API rewrite and node function refactor

* builtin functions

* builtin functions tested

* fix test

* send and recv spmv test

* WIP: fix examples

* Fix examples using new APIs
2018-09-01 13:38:01 -04:00
Minjie Wang 6105e44142 Many fix and updates (#47)
* subgraph copy from

* WIP

* cached members

* Change all usage of id tensor to the new Index object; remove set device in DGLGraph;

* subgraph merge API tested

* add dict type reduced msg test
2018-08-22 12:25:05 -04:00
Minjie Wang 0a78dbe12a Three DGL-GCN implementations (#35)
* synthetic dataset

* some fix

* gcn readme
2018-08-07 15:26:58 -04:00
Minjie Wang 2c489fadec SPMV specialization (#32)
* fix edge list order problem in cached graph.

* minor fix

* fix bug in edge iter

* SPMV works

* gcn spmv on CPU

* change gcn style

* fix cached graph performance; fixed gcn dataset bug

* reorg dir

* non-batch spmv; partial update problem with shape change

* fix reorder problem; finish gcn-batch impl

* pop API

* GPU context
2018-08-06 14:00:06 -04:00