98b825e3a1
[Doc][Conda] Fixing pytorch.nn.factory docs and Conda license ( #805 )
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* [Conda] Update license
* doc fixes
2019-08-28 16:56:31 +08:00
a5b661a23e
[Doc] Fixing pytorch nn factory docs ( #804 )
2019-08-28 16:23:06 +08:00
828e269cf4
[Doc] Fixing KNNGraph docs ( #803 )
2019-08-28 14:52:22 +08:00
e17add5602
[NN] Add MXNet impl for TAGCN module. ( #799 )
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* upd
* fig edgebatch edges
* add test
* trigger
* Update README.md for pytorch PinSage example.
Add noting that the PinSage model example under
example/pytorch/recommendation only work with Python 3.6+
as its dataset loader depends on stanfordnlp package
which work only with Python 3.6+.
* Provid a frame agnostic API to test nn modules on both CPU and CUDA side.
1. make dgl.nn.xxx frame agnostic
2. make test.backend include dgl.nn modules
3. modify test_edge_softmax of test/mxnet/test_nn.py and
test/pytorch/test_nn.py work on both CPU and GPU
* Fix style
* Delete unused code
* Make agnostic test only related to tests/backend
1. clear all agnostic related code in dgl.nn
2. make test_graph_conv agnostic to cpu/gpu
* Fix code style
* fix
* doc
* Make all test code under tests.mxnet/pytorch.test_nn.py
work on both CPU and GPU.
* Fix syntex
* Remove rand
* Add TAGCN nn.module and example
* Now tagcn can run on CPU.
* Add unitest for TGConv
* Fix style
* For pubmed dataset, using --lr=0.005 can achieve better acc
* Fix style
* Fix some descriptions
* trigger
* Fix doc
* Add nn.TGConv and example
* Fix bug
* Update data in mxnet.tagcn test acc.
* Fix some comments and code
* delete useless code
* Fix namming
* Fix bug
* Fix bug
* Add test code for mxnet TAGCov
* Update some docs
* Fix some code
* Update docs dgl.nn.mxnet
* Update weight init
* Fix
2019-08-28 13:19:17 +08:00
dc19cd5687
[Example] Dynamic Graph CNN on Point Cloud ( #789 )
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* initial commit
* second commit
* another commit
* change docstring
* migrating to dgl.nn
* fixes
* docs
* lint
* multiple fixes
* doc
2019-08-28 09:21:57 +08:00
650f6ee1e0
[NN] Add commonly used GNN models from examples to dgl.nn modules. ( #748 )
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* gat
* upd
* upd sage
* upd
* upd
* upd
* upd
* upd
* add gmmconv
* upd ggnn
* upd
* upd
* upd
* upd
* add citation examples
* add README
* fix cheb
* improve doc
* formula
* upd
* trigger
* lint
* lint
* upd
* add test for transform
* add test
* check
* upd
* improve doc
* shape check
* upd
* densechebconv, currently not correct (?)
* fix cheb
* fix
* upd
* upd sgc-reddit
* upd
* trigger
2019-08-27 18:21:19 +08:00
2c234118c3
[Feature] Add builtin mean reducer ( #787 )
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* upd
* upd
* upd
* upd
* upd
* passed test
* add note
* upd
* trigger
* slight change
* upd
* upd
* trigger
* fix
* simplify
* upd
* upd
* fudge
* upd
* trigger
* test partial
* upd
* trigger
2019-08-25 16:30:51 -04:00
708765f0a1
[NN] RGCN modules ( #744 )
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* rgcn module
* support id input
* WIP: model codes
* use faster index select
* dropout
* self loop
* WIP: link prediction
* fix lint
* WIP: docs
* docstring
* docstring
* merge two child classes
* mxnet rgcn module
* fix lint
* fix lint
* fix rename bug
* add uniform edge sampler
* fix fn name
* docstring
* fix mxnet rgcn module
* fix mx rgcn
* enable test on cuda
2019-08-23 16:38:48 -04:00
742d79a792
upd ( #741 )
2019-08-06 18:39:05 +08:00
5d3f470b72
[Feature] DGL Pooling modules ( #669 )
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* removal doc
* glob
* upd
* rm knn
* add softmax
* upd
* upd
* add broadcast and s2s
* optimize max_on
* forsaken changes to heterograph
* upd
* upd
* upd
* upd
* upd
* bugfix
* upd
* upd
* upd
* upd
* format upd
* upd format
* upd doc
* upd
* import order
* upd
* rm warnings
* fix
* upd test
* upd
* upd
* fix device
* upd
* upd
* upd
* upd
* remove 1.1
* upd
* trigger
* trigger
* add more tests
* fix device
* upd
* upd
* refactor
* fix?
* fix
* upd docstring
* refactor
* upd
* fix
* upd
* upd
* upd
* fix
* upd docs
* add shape
* refactor & upd doc
* upd doc
* upd
2019-08-06 01:43:25 +08:00
fc9d30fae4
[Graph] add local scope function ( #735 )
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* add local scope function
* fix lint
* fix docstring
* change local_scope to local_var; add context manager
* address comments
2019-08-02 00:11:48 -04:00
e9e587b6cb
[Refactor] C random number generator ( #729 )
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* rng refactor
* fix bugs
* unit test
* remove setsize
* lint
* fix test
* use explicit instantiation instead of inlining
* stricter test
* use tvm solution
* moved python interface to dgl.random
* lint
* address comments
* make getthreadid an inline function
2019-07-31 17:54:30 +08:00
34ac2ab47b
[Fix] Fix MXNet install doc ( #732 )
2019-07-30 09:25:41 +08:00
f79188da4c
fix. ( #712 )
2019-07-15 16:25:29 -07:00
90e78c5854
[FFI] FFI container support, custom structure extension via Object ( #693 )
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* WIP: import tvm runtime node system
* WIP: object system
* containers
* tested basic container composition
* tested custom object
* fix setattr bug
* tested object container return
* fix lint
* some comments about get/set state
* fix lint
* fix lint
* update cython
* fix cython
* ffi doc
* fix doc
2019-07-01 14:40:07 -04:00
f8feee1cc6
fix install. ( #673 )
2019-06-19 14:08:35 -07:00
73e5fb552a
New installation guide for CUDA builds ( #655 )
2019-06-14 13:52:17 +08:00
e16e895d53
[Doc] fix some document warnings ( #645 )
...
* fix doc
* fix some format and warnings
* fix
2019-06-11 13:41:41 -04:00
463807c511
[Doc] indexing missing docs. ( #625 )
...
* add doc of NodeFlow.
* add missing API in nodeflow.
* add docs and two more API to NodeFlow.
* add more docs.
* fix.
* fix.
* fix.
* add docs for distributed sampler.
2019-06-10 18:11:36 -07:00
ebbb6296f9
[Doc] doc page for builtin functions ( #642 )
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* doc page for builtin functions; install from source doc
* upload rst
* update
2019-06-10 18:29:28 -04:00
fb9dcc51ff
[Feature] Add API to convert graph to bidirected graph ( #598 )
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* to_bidirected
* to_bidirected
* Fix style
* Fix
* Update
* Fix
* Fix
* Update
* Add examples
2019-06-10 14:02:29 +08:00
993fd3f94b
[Enhancement] Add DGLGraph.to for PyTorch and MXNet backend ( #600 )
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* add graph_to
* use backend copy_to
* add test
* fix test
* framework agnostic to() test
* disable pylint complaint
* add examples
* fix docstring
* formatting
* Format
* Update test_to_device.py
2019-06-08 16:21:29 +08:00
baa16231f3
[Feature] Remove nodes/edges. ( #599 )
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* upd
* upd
* reformat
* upd
* upd
* add test
* fix arange
* fix slight bug
* upd
* trigger
* upd docs
* upd
* upd
* upd
* change subgraph to be raw data wrapper
* upd
* fix test
2019-06-08 13:44:36 +08:00
acefb9a9f0
[BUGFIX] fix the problems in the sampling tutorial. ( #523 )
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* add index.
* update.
* update tutorial.
2019-05-07 18:19:07 -07:00
a3febc061b
[Model] Add GIN Model ( #471 )
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* add gin model
* convert dataset.py to data_ont_the_fly way and put it into dgl.data module
* convert dataset.py to data_ont_the_fly way and put it into dgl.data module
python code checked
* modified document and reference TUDataset; checked python part and bypass cpp part due to error
* change tensor to numpy in dataset and transform in collate@Dataloader
* Change minor format issue
Change minor format issue
* moved logging; adjusted tqdm etc
2019-04-17 14:57:07 +08:00
00fc680aae
[Dataset] Add TUDataset ( #473 )
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* add graph classification dataset
* add node label
* add TUDataset
* Modify to consistent with Qi Huang's implementation
* add docs
* Add docs
* Fix change of environment variable
* Update tu.py
* Update tu.py
* Fix error when add node with np.int64
2019-04-10 09:37:53 -04:00
9b4fb2fb32
[Doc]Fix 'git remote' command in contribution doc ( #470 )
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* fix docs remote instead of remove
* Update CONTRIBUTORS.md
2019-04-01 09:05:17 +08:00
d1d580ecc1
[feature & bugfix] adjacency_matrix_scipy, wrong order of edges in immutable graph. ( #437 )
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* fix rgcn tutorial
* small fix
* upd
* findedge/s
* upd
* upd
* upd
* upd
* add test
* remove redundancy
* upd
* upd
* upd
* upd
* add edge_subgraph
* explicit cast
* add test immutable subg
* reformat
* reformat
* fix bug
* upd
* hotfix
* subgraph docs
* fix adj mat
* fix edges() order
* add test
* revert
* upd
* fix
* upd
2019-03-12 23:57:13 -04:00
ca2a7e1ca1
[Refactor] Nodeflow, sampling, CAPI ( #430 )
...
* enable cython
* add helper function and data structure for void_p vector return
* move sampler from graph index to contrib.sampling
* WIP
* WIP
* refactor layer sampling
* pass tests
* fix lint
* fix graphsage
* remove comments
* pickle test
* fix comments
* update dev guide for cython build
2019-03-05 14:07:22 -05:00
a88f351174
[Doc] update doc string ( #426 )
2019-03-02 14:00:52 -05:00
dba2a5b628
[Doc] Add DGLSubGraph, and DGLGraph.readonly() interface to docs ( #421 )
...
* fix rgcn tutorial
* small fix
* upd
* findedge/s
* upd
* upd
* upd
* upd
* add test
* remove redundancy
* upd
* upd
* upd
* upd
* add edge_subgraph
* explicit cast
* add test immutable subg
* reformat
* reformat
* fix bug
* upd
* hotfix
* subgraph docs
2019-03-01 10:10:24 -05:00
565f0c88fc
[WIP] [NN] Refactor NN package ( #406 )
...
* refactor graph conv
* docs & tests
* fix lint
* fix lint
* fix lint
* fix lint script
* fix lint
* Update
* Style fix
* Fix style
* Fix style
* Fix gpu case
* Fix for gpu case
* Hotfix edgesoftmax docs
* Handle repeated features
* Add docstring
* Set default arguments
* Remove dropout from nn.conv
* Fix
* add util fn for renaming
* revert gcn_spmv.py
* mx folder
* fix wierd bug
* fix mx
* fix lint
2019-02-25 18:41:21 -05:00
bd9171d6cd
[Doc Fix] Fix group_apply_edges docs display
2019-02-21 00:19:39 +08:00
788d8dd4ad
[Model]PPI dataloader and inductive learning script. ( #395 )
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* Create ppi.py
* Create train_ppi.py
* Update train_ppi.py
* Update train_ppi.py
* Create gat.py
* Update train.py
* Update train_ppi.py
* Update ppi.py
* Update train_ppi.py
* Update ppi.py
* Update train_ppi.py
* Update train_ppi.py
* Update ppi.py
* Update train_ppi.py
* update docs and readme
2019-02-17 16:41:30 -05:00
59ec7a9c93
MSBuild instructions ( #393 )
2019-02-14 11:56:32 -05:00
3cbfc25a32
[Tutorial] Batched Graph Classification ( #360 )
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* batched_graph_classification
* Fix
* Fix
* update tutorial with new dataset
* Final
* Fix doc for dataset
* small fix
2019-01-25 15:13:52 -05:00
abf12fc757
[Data] Synthetic dataset for graph classificaiton ( #364 )
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* minigc dataset
* more comments
* sphinx
2019-01-25 10:47:47 -05:00
19e1b14031
[Docs] Move file_pattern option from Makefile to conf.py ( #352 )
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* add rtfd
* rrr
* update
* change env
* temp fix
* update
* fix
* fix
* add
* conf
* Move file_pattern from Makefile to conf.py
* remove yml
* fix
* fix
* fix
* fix
* remove yml
* remove yml
* add doc docker
* add dgl install script
* change name
* change dockerfile
* fix
* name
* add
* fix
* fix
* fix
* fix
* add doc-build files
* remove unnecessary import os
2019-01-12 09:51:50 -05:00
3a868eb04b
[Feature] Max readout and consecutive labeling for networkx ( #341 )
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* Max readout and consecutive labeling
* Delete test_readout.py
* Delete test_basics.py
* Test case and fix
* Recover accidentally removed file
* Fix import order
* Fix test case
* Fix
* Fix
* Fix
* Fix
* Fix
* revert
* Fix
* Fix
* Fix
2019-01-10 12:58:05 -05:00
192bd952de
[Doc] fix broken link in doc ( #344 )
2019-01-07 17:51:36 -05:00
e19cd62ecd
[Test] Unify tests for different backends ( #333 )
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* test basics
* batched graph & filter, mxnet filter fix
* frame and function; bugfix
* test graph adj and inc matrices
* fixing start = 0 for mxnet
* test index
* inplace update & line graph
* multi send recv
* more tests
* oops
* more tests
* removing old test files; readonly graphs for mxnet still kept
* modifying test scripts
* adding a placeholder for pytorch to reserve directory
* torch 0.4.1 compat fixes
* moving backend out of compute to avoid nose detection
* tests guide
* mx sparse-to-dense/sparse-to-numpy is buggy
* oops
* contribution guide for unit tests
* printing incmat
* printing dlpack
* small push
* typo
* fixing duplicate entries that causes undefined behavior
* move equal comparison to backend
2019-01-05 23:32:33 -05:00
3edcaa1ed6
[Doc] small fix on the doc ref ( #337 )
2019-01-04 17:10:42 -05:00
6f9ae8d61e
[Doc] main doc page update and contribute guide ( #336 )
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* reorg the doc mainpage
* contribute guide
2019-01-04 17:02:37 -05:00
24bbdb745e
[Feature] Reversed Graph and Transform Module ( #331 )
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* reverse a graph
* Reverse a graph
* Fix
* Revert "Fix"
This reverts commit 1728826b4f3a083b76dfc0fdecd2bbf943a971b2.
* Fix
* Fix
* Delete vcs.xml
* Delete Project_Default.xml
* Fix
* Fix
* Fix
* Remove outdated test
* Reorg transform and update reverse (#2 )
* Reorg transform and update reverse
* Fix doc and test
* Update test
* Resolve conflict
* CI oriented fix
* Remove outdated import
* Fix import
* Fix import
* define __all__ for wildcard imports
* Fix import
* Address circular imports
* Fix
* Fix test case
* Fix
* Fix
* Remove unused import
* Fix
* Fix
* Fix
2019-01-04 13:51:19 -05:00
534ea8c970
[Doc] Update index.rst ( #328 )
2018-12-26 19:29:00 -05:00
d10baaeff6
[DOC] Fix repo link ( #295 )
...
* Update index.rst
* Update index.rst
2018-12-11 14:41:15 -05:00
322bd713e4
[Release] 0.1.2: Require Windows 10 ( #277 )
...
* 0.1.2 release
* oops
* more fixes on windows
* [Bugfix] fix download dir (#275 )
* fix download dir
* add doc for the env var
* windows 7 -> 10
* doc update
2018-12-07 04:46:21 -05:00
37feb479fd
[Release] 0.1.2 updates ( #276 )
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* 0.1.2 release
* oops
* more fixes on windows
* [Bugfix] fix download dir (#275 )
* fix download dir
* add doc for the env var
2018-12-07 01:54:13 -05:00
7aa494b3bc
[Bugfix][Doc] explain the batch dimension in the doc and many fix ( #266 )
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* add more unit tests for mxnet.
* fix.
* explain the batch dimension.
* update doc.
* disable unit tests on DFS.
* fix graph traversal.
2018-12-06 00:48:57 -05:00
c620bfc2b7
[Doc] faq & env ( #263 )
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* faq & env
* add update version script; 0.0.1 -> 0.1.0
2018-12-05 19:18:33 -05:00
Quan (Andy) Gan