mirrors / dmlc--dgl

文件历史

410 提交 34 分支 42 Git 标签
0.2.x
提交图

36 次代码提交

作者 SHA1 备注 提交日期
Da Zheng bea07b41b3 [Sampler] fix the API of neighbor sampler. (#407) 
* don't return aux_info.

* fix sampler test.

* fix sse.

* fix.

* add comment.
 2019-02-28 13:45:21 -08:00
Mufei Li 3f891b64b7 [Tutorial] Fix gat tutorial (#420) 2019-02-28 11:10:14 -05:00
Hao Zhang 98ff82e527 [Doc] Tutorial for GAT (#400) 
* 9_gat.py

* readme

* Update 9_gat.py

* Update 9_gat.py

* fix format
 2019-02-20 22:50:55 -05:00
Da Zheng f370e628cd [Feature] add NodeFlow API (#361) 
* sample layer subgraphs.

* fix.

* fix.

* add layered subgraph.

* fix lint.

* fix.

* fix tutorial.

* fix.

* remove copy_to_parent.

* add num_layers

* move sampling code to sampler.cc

* fix.

* move subgraph construction out.

* Revert "move subgraph construction out."

This reverts commit 24b3d13b0d8ed5f91847ea75a7674ee8f7d45cff.

* change to NodeFlow.

* use NodeFlow in Python.

* use NodeFlowIndex.

* add node_mapping and edge_mapping.

* remove unnecessary code in SSE tutorial.

* Revert "remove unnecessary code in SSE tutorial."

This reverts commit 093f0413d5fa2e63ca5f80c46c80a126a9fb720c.

* fix tutorial.

* move to node_flow.

* update gcn cv updater.

* import NodeFlow.

* update.

* add demo code for vanilla control variate sampler.

* update.

* update.

* add neighbor sampling.

* return flow offsets.

* update node_flow.

* add test.

* fix sampler.

* fix graph index.

* fix a bug in sampler.

* fix map_to_layer_nid and map_to_flow_eid.

* fix apply_flow.

* remove model code.

* implement flow_compute.

* fix a bug.

* reverse the csr physically.

* add mini-batch test.

* add mini batch test.

* update flow_compute.

* add prop_flows

* run on specific nodes.

* test copy

* fix a bug in creating frame in NodeFlow.

* add init gcn_cv_updater.

* fix a minor bug.

* fix gcn_cv_updater.

* fix a bug.

* fix a bug in NodeFlow.

* use new h in gcn_cv_updater.

* add layer_in_degree and layer_out_degree.

* fix gcn_cv_updater for gpu.

* temp fix in NodeFlow for diff context.

* allow enabling/disabling copy back.

* add with-updater option.

* fix a bug in computing degree.

* add with-cv option.

* rename and add comments.

* fix lint complain.

* fix lint.

* avoid assert.

* remove assert.

* fix.

* fix.

* fix.

* fix.

* fix the methods in NodeFlow.

* fix lint.

* update SSE.

* remove gcn_cv_updater.

* correct comments for the schedulers.

* update comment.

* add map_to_nodeflow_nid

* address comment.

* remove duplicated test.

* fix int.

* fix comments.

* fix lint

* fix.

* replace subgraph with NodeFlow.

* move view.

* address comments.

* fix lint.

* fix lint.

* remove static_cast.

* fix docstring.

* fix comments.

* break SampleSubgraph.

* move neighbor sampling to sampler.cc

* fix comments.

* rename.

* split neighbor_list.

* address comments.

* fix.

* remove TODO.
 2019-02-19 15:49:28 -08:00
Zihao Ye ae1806f651 [Bugfix] RGCN tutorial (#388) 
* fix rgcn tutorial

* small fix

* upd
 2019-02-15 11:14:56 +08:00
brett koonce 707334ce85 minor spelling tweaks (#349) 
* minor spelling tweaks

* Update CONTRIBUTORS.md
 2019-01-10 12:02:31 -05:00
Minjie Wang 6f9ae8d61e [Doc] main doc page update and contribute guide (#336) 
* reorg the doc mainpage

* contribute guide
 2019-01-04 17:02:37 -05:00
Da Zheng 01e8794f12 [Doc] Show MXNet examples (#318) 
* update GNN tutorial.

* Update README.txt
 2018-12-17 15:25:13 -05:00
Lingfan Yu 0cbe521b99 [Doc] Fix document building for multiple tensor backends (#301) 
* remove loading backend in sse

* build mxnet in a second run

* a third run to fix everything

* fix docstring in sampler

* fix docstring in transformer

* README for doc build

* some reordering and printing

* use filename_pattern instead of ignore_pattern to reduce warning at the cost of redundant work...

* add env var to use mxnet in Jenkinsfile

* remove step 3, it's already fixed by previous commit
 2018-12-12 11:07:46 -05:00
Minjie Wang af23c45726 [Release] update version (#297) 
* update version; add news.md; modify contributing.md

* change urls to dmlc
 2018-12-11 15:40:51 -05:00
Zihao Ye 8bc01c6309 [Tutorial] Tutorial fix (SSE link & Transformer) (#285) 
* upd tutorial

* upd tutorial
 2018-12-10 11:26:19 -05:00
Zihao Ye 9f32554296 [Model]Transformer (#186) 
* change the signature of node/edge filter

* upd filter

* Support multi-dimension node feature in SPMV

* push transformer

* remove some experimental settings

* stable version

* hotfix

* upd tutorial

* upd README

* merge

* remove redundency

* remove tqdm

* several changes

* Refactor

* Refactor

* tutorial train

* fixed a bug

* fixed perf issue

* upd

* change dir

* move un-related to contrib

* tutuorial code

* remove redundency

* upd

* upd

* upd

* upd

* improve viz

* universal done

* halt norm

* fixed a bug

* add draw graph

* fixed several bugs

* remove dependency on core

* upd format of README

* trigger

* trigger

* upd viz

* trigger

* add transformer tutorial

* fix tutorial

* fix readme

* small fix on tutorials

* url fix in readme

* fixed func link

* upd
 2018-12-07 15:22:46 +08:00
Da Zheng 1bbc885b40 move batcher to examples. (#269) 
* move pytorch code to examples.

* fix.

* fix tutorial
 2018-12-06 06:45:27 -08:00
VoVAllen cd907cddfa [Tutorial] Add sse tutorial & MXNet Tutorial CI (#252) 
* add sse tutorial

* add mxnet tutorial ci

* fix ci

* fix ci

* fix ci

* fix ci

* fix ci

* fix ci

* Fix ci

* Fix ci

* Fix ci

* fix ci

* fix ci

* fix ci

* fix ci

* fix ci

* fix ci

* Fix CI

Fix CI image

* permission fix

* fix a bug in the code.

* small fix

* fix doc

* fix ci

* shorten the iters

* fix

* remove extra file

* add load_backend api to dynamically switch to another backend

* try fix

* fix tutorial

* fix tutorial

* fix bug in tutorial
 2018-12-05 16:21:44 -05:00
Lingfan Yu f4a9a455f5 [Doc] Fix hyperlink in tutorial of tutorals (#260) 
* fix all code tutorial links and typos in texts

* sse readme format

* fix

* sse paper link

* gat readme

* fix
 2018-12-05 15:04:27 -05:00
Minjie Wang 21255b6528 [Bugfix] tolist and dependencies in dgl.data (#239) 
* change Index.tolist -> Index.tonumpy; fix bug in traversal; remove dependencies in data

* fix import

* fix __all__ and some docstring
 2018-12-05 12:20:59 -05:00
VoVAllen 16cc528757 [Doc] Improve Capsule with Jinyang & Fix wrong tutorial level layout (#236) 
* improve capsule tutorial with jinyang

* fix wrong layout of second-level tutorial

* delete transformer
 2018-12-04 10:46:49 -05:00
HQ b1e8d95e99 [Doc] LGNN tutorial (#210) 
* tutorial notebook added

* lg tutorial cleaned up

* dataset scaffold

* move dataloader to data

* fix model

* remove todo

* utils seperated

* [model]line graph new implementation + tutorial + binary sub graph dataset

* [tutorial] line graph sphinx scaffold

* [tutorial] lgnn tutorial improved

* [tutorial] remove notebook

* [tutorial] fix lg and gcn links

* [tutorial] fix random seed

* [tutorial]fix

* WIP

* code refactor done

* new mini dataset; remove utils code

* fix

* word fix

* fix link

* minor fix

* minor fix

* minor fix
 2018-12-03 17:59:50 -05:00
Minjie Wang 10e18ed982 [Doc] overview and others (#222) 
* model tutorials overview

* update the 1_first

* revised overview and summarized "what is DGL" in glance
 2018-12-03 17:31:35 -05:00
Lingfan Yu 168794cdbc remove text using code line numbers (#217) 2018-12-01 21:04:39 -05:00
Lingfan Yu 53ea03ad82 [Doc] Fix doc bug and warning (#213) 
* fix dgmg tutorial indentation

* bug in incidence_matrix docstring

* remove print
 2018-12-01 18:58:56 -05:00
Lingfan Yu 0f121eeb76 [Doc] RGCN tutorial (#206) 
* rgcn tutorial

* data processing for rgcn

* many fix

* requirements for rgcn tutorial

* fix comments

* description of rgcn dataset

* author

* bug fix

* move all dataset to s3
 2018-12-01 14:58:13 -05:00
Haibin Lin cccc2339c1 [Dataset] update s3 links (#209) 2018-12-01 14:45:30 -05:00
Mufei Li e02acc4c01 [Doc] Tutorial production for DGMG (#204) 2018-12-01 00:32:43 -05:00
Zihao Ye c80dc5e012 [model] Tree-LSTM update & hotfix(dropbox link) (#202) 
* change the signature of node/edge filter

* upd filter

* Support multi-dimension node feature in SPMV

* stable version

* hotfix

* upd tutorial

* upd README
 2018-11-30 19:39:49 -05:00
VoVAllen e17c41c0da [Model][Tutorial] Fix capsule memory leak (#185) 
* fix memory leak & Remove unnecessary initializer

* change confused name

* fix name

* Move func outside loop

* fix name inconsistency
 2018-11-29 09:40:21 -05:00
Minjie Wang 0ec1a492b3 [Frame] change num rows behavior (#163) 
* move initializer to column scheme; change num rows behavior

* poke mx ci

* fix mx utest in append

* fix bug in add edges

* utest for updating partial rows

* fix bug in from_networkx and from_scipy_matrix

* revert per-col initializer change

* fix pickle utest
 2018-11-21 11:50:46 -05:00
Minjie Wang cab1fdf2ec [Doc] doc update (#158) 
* minor fix

* jake's change
 2018-11-17 01:53:53 -05:00
Zihao Ye 53b9a4bdbc [DOC][Model] Update Tree-LSTM (#152) 
* update tree lstm

* tree_lstm (new interface)

* simplify pop

* merge qipeng(root)

* upd tree-lstm & tutorial

* upd model

* new capsule tutorial

* capsule for new API

* fix deprecated API

* New tutorial and example

* investigate gc problem

* add viz code

* new capsule tutorial

* remove ipynb

* move u_hat

* add link

* add requirements.txt

* remove ani.save

* update ci to install requirements

* utf-8

* change seed

* graphviz requirement

* accelerate

* little format

* update some markup
 2018-11-14 22:29:59 -05:00
Zihao Ye a9ffb59e66 [DOC][Model] Tree-LSTM example and tutorial (#146) 
[DOC][Model] Tree-LSTM example and tutorial
 2018-11-13 18:09:14 -05:00
VoVAllen 7cb50072a4 [Doc][Model] New Capsule Tutorial & Example (#143) 
* new capsule tutorial

* capsule for new API

* fix deprecated API

* New tutorial and example

* investigate gc problem

* add viz code

* new capsule tutorial

* remove ipynb

* move u_hat

* add link

* add requirements.txt

* remove ani.save

* update ci to install requirements

* add graphviz
 2018-11-12 12:43:13 -05:00
Minjie Wang 7fe6d0c857 [Doc] Refactor API doc (#128) 
* refactor API doc; add markup link in tutorials

* fix readme
 2018-11-08 22:57:16 -05:00
Minjie Wang 79ceccef43 [Doc] Fix missing file (#119) 2018-11-04 23:02:11 -05:00
Gan Quan 87ed21ec42 [Doc] Basic tutorials & two model tutorials (#118) 
[Doc] Basic tutorials & two model tutorials
 2018-11-04 22:57:05 -05:00
Minjie Wang 68ec624782 [API][Doc] API change & basic tutorials (#113) 
* Add SH tutorials

* setup sphinx-gallery; work on graph tutorial

* draft dglgraph tutorial

* update readme to include document url

* rm obsolete file

* Draft the message passing tutorial

* Capsule code (#102)

* add capsule example

* clean code

* better naming

* better naming

* [GCN]tutorial scaffold

* fix capsule example code

* remove previous capsule example code

* graph struc edit

* modified:   2_graph.py

* update doc of capsule

* update capsule docs

* update capsule docs

* add msg passing prime

* GCN-GAT tutorial Section 1 and 2

* comment for API improvement

* section 3

* Tutorial API change (#115)

* change the API as discusses; toy example

* enable the new set/get syntax

* fixed pytorch utest

* fixed gcn example

* fixed gat example

* fixed mx utests

* fix mx utest

* delete apply edges; add utest for update_edges

* small change on toy example

* fix utest

* fix out in degrees bug

* update pagerank example and add it to CI

* add delitem for dataview

* make edges() return form that is compatible with send/update_edges etc

* fix index bug when the given data is one-int-tensor

* fix doc
 2018-11-02 17:19:14 -04:00
Minjie Wang 9fd94b53ac fix capsule doc (#104) 2018-10-25 16:19:36 -04:00