905db29286
cpp lg
2018-10-07 22:25:45 +08:00
ec4216dda8
[MODEL] junction tree vae example ( #70 )
...
* junction tree vae example
* added README and moved data to dropbox
* auto download; some fix in python3
2018-10-06 16:59:47 -04:00
596ca471a5
Merge branch 'cpp' of https://github.com/jermainewang/dgl into line-graph
2018-10-06 23:52:04 +08:00
8a6d25ae69
Resolve conflicts in python/dgl/graph.py
2018-10-06 16:13:06 +08:00
72f6345515
Fix for subgraph test and some docs
2018-10-05 23:58:42 -04:00
b0e02e5b52
Update the subgraph ( #73 )
...
* update subgraph.
* update subgraph API.
* keep node embedding.
2018-10-05 22:17:33 -04:00
1209978d97
install doc
2018-10-05 16:23:55 -04:00
1b06998465
doc for batched graph
2018-10-05 15:07:42 -04:00
c7b9f06946
Init sphinx doc
2018-10-05 14:57:09 -04:00
c468e06867
some fix
2018-10-05 10:38:44 -04:00
74888fee5c
readout signature
2018-10-04 13:20:25 -04:00
26dcfb5bc2
Merge branch 'cpp' of https://github.com/jermainewang/dgl into cpp
...
Conflicts:
python/dgl/graph.py
2018-10-04 21:26:56 +08:00
cc372e3774
sbm mixture
2018-10-04 21:22:41 +08:00
fde4f581d2
gcn runnable
2018-10-03 21:05:19 -04:00
2be55fb50a
graph batch and unbatch
2018-10-03 17:07:41 -04:00
7d04c8c9f3
remove nonbatchable mode
2018-10-03 12:20:12 -04:00
a8a4fcbaff
quickly integrating with tree-lstm example
2018-09-24 23:42:56 -04:00
882e2a7be0
Graph batching. Support convert nx graph attrs
2018-09-24 21:34:51 -04:00
314a75f367
WIP: batched graph
2018-09-24 17:31:50 -04:00
79f62400fe
WIP: batch graphs
2018-09-21 14:53:25 -04:00
4aebfd7bd8
add merge graph; fix bug in from_networkx
2018-09-21 12:25:54 -04:00
7b5d4c5886
pass specialization test
2018-09-20 18:22:46 -04:00
b2e4bdc03f
passed basic test batching
2018-09-20 14:44:06 -04:00
f26ecb4909
Fix batching node-only graphs ( #62 )
...
* fixing batching with graphs with no edges
* oops forgot test
2018-09-20 10:36:35 -04:00
44db98c4e0
remove nx inheritence
2018-09-19 22:49:14 -04:00
916d375ba3
Merge branch 'master' into cpp
2018-09-19 21:04:31 -04:00
a1038eb1ee
graph index
2018-09-19 21:02:15 -04:00
9b0a01db41
Support list of msg or reduce func for update_all and send_and_recv ( #58 )
...
* support multiple fields in spmv
* finishing SPMV executor
* non-spmv case
* refactor code to give single mfunc rfunc a shortcut
* two test cases to test multiple msg/red func
* catching cases where msg uses anonymous field
* default ALL for update edge
* more corner case test
* print failed test
* delete print
* fix builtin max reducer
2018-09-19 20:49:29 -04:00
a81d27dc67
WIP: integrating
2018-09-19 10:52:20 -04:00
dba79f1d45
also return edge id for many APIs
2018-09-18 23:40:13 -04:00
71e6e0cd5f
python shim + some simple tests
2018-09-17 14:40:29 -04:00
758cb16e67
ndarray argument
2018-09-17 00:15:46 -04:00
c086d454d3
Use TVMContext
2018-09-16 16:56:29 -04:00
b24daa6607
change to rel import within dgl
2018-09-16 16:14:37 -04:00
842d37682b
python api
2018-09-16 15:49:11 -04:00
2694b12725
import ffi solution from TVM
2018-09-05 10:51:31 -04:00
61fa3c6cf5
Builtin function and API changes ( #53 )
...
* WIP: API renaming
* API rewrite and node function refactor
* builtin functions
* builtin functions tested
* fix test
* send and recv spmv test
* WIP: fix examples
* Fix examples using new APIs
2018-09-01 13:38:01 -04:00
b7eb16595f
Fix 0deg update_to and Tree-LSTM model ( #51 )
...
* WIP
* WIP
* treelstm dataloader
* Main training loop.
* trainable treelstm script
* fix dependency
* cuda training
* Add tensorized topological traversal
* allowing update_to() with no incoming messages
* fixing partial cases
2018-08-28 11:57:08 -04:00
5e75f5dbfc
Fix reducing with 0 incoming messages ( #48 )
...
* fixing 0 degree reduces
* adopting accum=None semantics
* minor fix as per reviews
* TODO in test
* fix test
2018-08-24 11:51:05 -04:00
c42eac718f
Fix batched graph edge order bug and other fixes ( #50 )
...
* fix dgl.batch edge ordering bug
* add graph batching test cases
* fix partial spmv ctx.
* add dataset generating for dgmg
2018-08-23 15:11:38 -04:00
6105e44142
Many fix and updates ( #47 )
...
* subgraph copy from
* WIP
* cached members
* Change all usage of id tensor to the new Index object; remove set device in DGLGraph;
* subgraph merge API tested
* add dict type reduced msg test
2018-08-22 12:25:05 -04:00
3721822e9e
Subgraph API ( #39 )
...
* subgraph
* more test cases
* WIP
* new FrameRef and test
* separate nx init code
* WIP
* subgraph code and test
* line graph code and test
* adding new test for adding new features on line graphs
* no backtracking line graph
* fix inplace relabel
2018-08-18 14:14:43 -04:00
96179b0c96
Deep Generative Models of Graphs ( #14 )
...
* model code for generative graphs
* batched version for dynamic graph generation using padding
* renaming function train back to forward
* remove old util function for padding DGMG
* override networkx clear to reset state, add dgl.nn
* Dynamic graph without batching
* use relative import path
* load dataset, pad batch
* bug fix
* experimental batch and unbatch
* dgmg batched version
* minor tweak
* move preprocessing padding into data loading
* batch graph test code
* minor
* batched graph class and test cases
* make dgl.nn.gcn a simple layer plus minor fix
* update dgmg model
* test forward using attribute field
* use frame append, minor changes
* moving networkx operations out of forward
* revert some changes
* remove structural immutability check
2018-08-16 14:05:50 -04:00
e3bac70b4f
Spmv partial ( #43 )
...
* partial spmv impl and test
* some fix for update edge
2018-08-12 21:02:55 -04:00
ee241699e0
GAT model ( #37 )
...
* GAT model
* fix output projection to have only one head
2018-08-09 22:44:53 -04:00
4673b96f92
fix set_n_repr grad problem ( #38 )
2018-08-09 17:48:55 -04:00
0a78dbe12a
Three DGL-GCN implementations ( #35 )
...
* synthetic dataset
* some fix
* gcn readme
2018-08-07 15:26:58 -04:00
2c489fadec
SPMV specialization ( #32 )
...
* fix edge list order problem in cached graph.
* minor fix
* fix bug in edge iter
* SPMV works
* gcn spmv on CPU
* change gcn style
* fix cached graph performance; fixed gcn dataset bug
* reorg dir
* non-batch spmv; partial update problem with shape change
* fix reorder problem; finish gcn-batch impl
* pop API
* GPU context
2018-08-06 14:00:06 -04:00
11e42d1094
Batching semantics and naive frame storage ( #31 )
...
* batch message_func, reduce_func and update_func
Conflicts:
python/dgl/backend/pytorch.py
* test cases for batching
Conflicts:
python/dgl/graph.py
* resolve conflicts
* setter/getter
Conflicts:
python/dgl/graph.py
* test setter/getter
Conflicts:
python/dgl/graph.py
* merge DGLGraph and DGLBGraph
Conflicts:
python/dgl/graph.py
Conflicts:
python/dgl/graph.py
* batchability test
Conflicts:
python/dgl/graph.py
Conflicts:
python/dgl/graph.py
* New interface (draft)
Conflicts:
_reference/gat_mx.py
_reference/molecular-gcn.py
_reference/molecular-gcn_mx.py
_reference/multi-gcn.py
_reference/multi-gcn_mx.py
_reference/mx.py
python/dgl/graph.py
* Batch operations on graph
Conflicts:
.gitignore
python/dgl/backend/__init__.py
python/dgl/backend/numpy.py
python/dgl/graph.py
* sendto
* storage
* NodeDict
* DGLFrame/DGLArray
* scaffold code for graph.py
* clean up files; initial frame code
* basic frame tests using pytorch
* frame autograd test passed
* fix non-batched tests
* initial code for cached graph; tested
* batch sendto
* batch recv
* update routines
* update all
* anonymous repr batching
* specialize test
* igraph dep
* fix
* fix
* fix
* fix
* fix
* clean some files
* batch setter and getter
* fix utests
2018-07-30 14:10:37 -04:00
beaeb8a827
Setup Jenkins ( #30 )
...
* jenkins init
* fix
* fix
* fix
* fix
* fix
* fix
* fix
* fix
* fix
* fix
* fix
* test succ (#1 )
* test succ
* test fail
* fix fail
* fix jenkins
* icon
* icon
* icon
2018-07-22 18:38:37 -04:00
GaiYu0