f370e628cd
[Feature] add NodeFlow API ( #361 )
...
* sample layer subgraphs.
* fix.
* fix.
* add layered subgraph.
* fix lint.
* fix.
* fix tutorial.
* fix.
* remove copy_to_parent.
* add num_layers
* move sampling code to sampler.cc
* fix.
* move subgraph construction out.
* Revert "move subgraph construction out."
This reverts commit 24b3d13b0d8ed5f91847ea75a7674ee8f7d45cff.
* change to NodeFlow.
* use NodeFlow in Python.
* use NodeFlowIndex.
* add node_mapping and edge_mapping.
* remove unnecessary code in SSE tutorial.
* Revert "remove unnecessary code in SSE tutorial."
This reverts commit 093f0413d5fa2e63ca5f80c46c80a126a9fb720c.
* fix tutorial.
* move to node_flow.
* update gcn cv updater.
* import NodeFlow.
* update.
* add demo code for vanilla control variate sampler.
* update.
* update.
* add neighbor sampling.
* return flow offsets.
* update node_flow.
* add test.
* fix sampler.
* fix graph index.
* fix a bug in sampler.
* fix map_to_layer_nid and map_to_flow_eid.
* fix apply_flow.
* remove model code.
* implement flow_compute.
* fix a bug.
* reverse the csr physically.
* add mini-batch test.
* add mini batch test.
* update flow_compute.
* add prop_flows
* run on specific nodes.
* test copy
* fix a bug in creating frame in NodeFlow.
* add init gcn_cv_updater.
* fix a minor bug.
* fix gcn_cv_updater.
* fix a bug.
* fix a bug in NodeFlow.
* use new h in gcn_cv_updater.
* add layer_in_degree and layer_out_degree.
* fix gcn_cv_updater for gpu.
* temp fix in NodeFlow for diff context.
* allow enabling/disabling copy back.
* add with-updater option.
* fix a bug in computing degree.
* add with-cv option.
* rename and add comments.
* fix lint complain.
* fix lint.
* avoid assert.
* remove assert.
* fix.
* fix.
* fix.
* fix.
* fix the methods in NodeFlow.
* fix lint.
* update SSE.
* remove gcn_cv_updater.
* correct comments for the schedulers.
* update comment.
* add map_to_nodeflow_nid
* address comment.
* remove duplicated test.
* fix int.
* fix comments.
* fix lint
* fix.
* replace subgraph with NodeFlow.
* move view.
* address comments.
* fix lint.
* fix lint.
* remove static_cast.
* fix docstring.
* fix comments.
* break SampleSubgraph.
* move neighbor sampling to sampler.cc
* fix comments.
* rename.
* split neighbor_list.
* address comments.
* fix.
* remove TODO.
2019-02-19 15:49:28 -08:00
1c63dd4f52
[Doc] fix the comment error of edge_id in graph.h ( #382 )
2019-02-11 13:14:47 -05:00
5b9147c464
[Feature] Edge Group Apply API ( #358 )
...
* add rtfd
* rrr
* update
* change env
* temp fix
* update
* fix
* fix
* add
* conf
* Move file_pattern from Makefile to conf.py
* remove yml
* fix
* fix
* fix
* fix
* remove yml
* remove yml
* add doc docker
* add dgl install script
* change name
* change dockerfile
* fix
* name
* add
* fix
* fix
* fix
* fix
* fix docker
* delete sphinx.py for doc-build backend
* Add softmax to test backend
* Add group apply function and tests
* Delete unnecessary file
* Update comments and test
* Fix lint
* remove unused bucketing code
* group apply edge bucketing code
* gen degree bucket schedule for group apply edge
* schedule and graph code
* fix compiling
* fix
* fix lint
* naming
* harder test case
* fix comments
* more comments
* tweak function name
2019-02-03 11:14:52 -05:00
929742b588
[Feature] Reimplement Immutable graph index in DGL ( #342 )
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* init.
* it's compiled.
* add immutable graph constructor.
* add immutable graph API.
* fix.
* impl get adjacency matrix.
* fix.
* fix graph_index from scipy matrix.
* add neighbor sampling.
* remap vertex ids.
* fix.
* move sampler test.
* fix tests.
* add comments
* remove mxnet-specific immutable graph.
* fix.
* fix lint.
* fix.
* try to fix windows compile error.
* fix.
* fix.
* add test.
* unify Graph and ImmutableGraph.
* fix bugs.
* fix compile.
* move immutable graph.
* fix.
* remove print.
* fix lint.
* fix
* fix lint.
* fix lint.
* fix test.
* fix comments.
* merge GraphIndex and ImmutableGraphIndex.
* temp fix.
* impl GetAdj.
* fix lint
* fix.
* fix.
* fix.
* fix.
* fix.
* use csr only for readonly graph.
* Revert "use csr only for readonly graph."
This reverts commit 8e24bb033af8504531b22849de5b7567b168e0d5.
* remove code.
* fix.
* fix.
* fix.
* fix.
* fix.
* fix.
* address comments.
* fix for comments.
* fix comments.
* revert.
* move test_graph_index to compute.
* fix.
* fix.
* impl GetAdj for coo.
* fix.
* fix tests.
* address comments.
* address comments.
* fix comment.
* address comments.
* use lambda.
* other comments.
* address comments.
* modify the semantics of edges.
* fix order.
* use DGLIdIter
* fix.
* remove NotImplemented.
* revert some code.
2019-01-17 09:59:53 +08:00
a1d50f0f53
[Refactor] Rename before release ( #261 )
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* include/dgl/runtime
* include
* src/runtime
* src/graph
* src/scheduler
* src
* clean up CMakeLists
* further clean up in cmake
* install commands
* python/dgl/_ffi/_cython
* python/dgl/_ffi/_ctypes
* python/dgl/_ffi
* python/dgl
* some fix
* copy right
2018-12-05 16:45:36 -05:00
d6c80e0cf7
[API] bfs with edges ( #132 )
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* bfs with edges
* dfs toy test case
* clean up
* style fix
* bugfix
* updating docs for bfs_edges and readouts
2018-11-11 17:19:55 -05:00
2319167444
[API] Graph traversal ( #103 )
...
* bfs, dfs and topological traversal
* dfs and test cases
* Conflicts:
python/dgl/graph.py
src/graph/graph.cc
src/graph/graph_op.cc
* documentation
* requested changes
* Conflicts:
Jenkinsfile
examples/pytorch/gcn/gcn.py
examples/pytorch/gcn/gcn_spmv.py
python/dgl/graph.py
python/dgl/graph_index.py
src/graph/graph.cc
src/graph/graph_op.cc
* Conflicts:
Jenkinsfile
python/dgl/graph_index.py
* fix lint errors
* fix lint errors
* fix lint errors
* fix test cases
* requested changes
* traversal interface
* [Bug] fixed a typo that caused syntax error (#120 )
* WIP
* bfs nodes generator works
* topological traversal
* WIP: dfs_edges
* dfs edges
* dfs labeled edges
* utest for traversal
* fix lint
* fix utest
* code clean
* changes as requested
2018-11-08 10:14:19 -05:00
820c6b9ed6
Add lint script and fix cpplint errors
2018-10-18 22:44:29 -04:00
bc3f852dab
[GRAPHINDEX] Multigraph support ( #79 )
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* multigraph support on graph index
* more tests
* multigraph flag, bugfix on clear & copy
* networkx interfaces
* including graph index tests in Jenkins
* node subgraph test
* edge subgraphs
* removing duplicates in pred/succ
* more explicit test and doc
* query source and destination from edge id
* subgraphindex
* renaming has_edge to has_edge_between, apply_edges adding eid
* send_on and send_and_recv_on
* DGLGraph edge subgraph
* merged send_on and send_and_recv_on
* change request
* removing hashmap
* creating multigraph by flag; mingw support
* changes per request
* reverting networkx auto multigraph discovery
* notes on send/send_and_recv on multigraphs
* changing test reducer from sum to max
* added a fixme note in spmv scheduler
2018-10-17 21:46:10 -04:00
314a75f367
WIP: batched graph
2018-09-24 17:31:50 -04:00
4aebfd7bd8
add merge graph; fix bug in from_networkx
2018-09-21 12:25:54 -04:00
148cc048d1
remove vector view
2018-09-21 11:13:51 -04:00
7b5d4c5886
pass specialization test
2018-09-20 18:22:46 -04:00
dba79f1d45
also return edge id for many APIs
2018-09-18 23:40:13 -04:00
71e6e0cd5f
python shim + some simple tests
2018-09-17 14:40:29 -04:00
14d88497ca
impl
2018-09-13 17:51:15 -04:00
2c626b90f4
c++ graph interface draft
2018-09-11 18:00:53 -04:00
deb8a5a592
WIP: graph interface
2018-09-07 20:40:07 -04:00
Da Zheng