21255b6528
[Bugfix] tolist and dependencies in dgl.data ( #239 )
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* change Index.tolist -> Index.tonumpy; fix bug in traversal; remove dependencies in data
* fix import
* fix __all__ and some docstring
2018-12-05 12:20:59 -05:00
0ec1a492b3
[Frame] change num rows behavior ( #163 )
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* move initializer to column scheme; change num rows behavior
* poke mx ci
* fix mx utest in append
* fix bug in add edges
* utest for updating partial rows
* fix bug in from_networkx and from_scipy_matrix
* revert per-col initializer change
* fix pickle utest
2018-11-21 11:50:46 -05:00
e515f5311b
[Frame] supporting partial row on first column and individual column initializers ( #160 )
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addresses issue #156
2018-11-19 18:18:36 -05:00
3e43d7b8d2
[Test] Lower allclose precision ( #129 )
2018-11-08 22:52:22 -05:00
2ecd2b23ec
[Frame] Support slice type indexing; optimize dgl.batch ( #110 )
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* cherry picking optimization from jtnn
* unbatch by slicing frames
* reduce pack
* oops
* support frame read/write with slices
* reverting to unbatch by splitting; slicing is unfriendly to backward
* replacing lru cache with static object factory
* replacing Scheme object with namedtuple
* remove comment
* forgot the find edges interface
* subclassing namedtuple
2018-11-01 00:03:06 -04:00
b9631912db
[Frame] Refactor frame. ( #85 )
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* refactor frame codes
* fix unit test
* fix gcn example
* minor doc/message changes
* raise errors for non-exist columns in FrameRef; sanity check when append
* fix unittest; change error msg
* Add warning for none initializer
* fix unittest
* use warnings package
2018-10-18 15:08:21 -04:00
b2e4bdc03f
passed basic test batching
2018-09-20 14:44:06 -04:00
61fa3c6cf5
Builtin function and API changes ( #53 )
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* WIP: API renaming
* API rewrite and node function refactor
* builtin functions
* builtin functions tested
* fix test
* send and recv spmv test
* WIP: fix examples
* Fix examples using new APIs
2018-09-01 13:38:01 -04:00
6105e44142
Many fix and updates ( #47 )
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* subgraph copy from
* WIP
* cached members
* Change all usage of id tensor to the new Index object; remove set device in DGLGraph;
* subgraph merge API tested
* add dict type reduced msg test
2018-08-22 12:25:05 -04:00
3721822e9e
Subgraph API ( #39 )
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* subgraph
* more test cases
* WIP
* new FrameRef and test
* separate nx init code
* WIP
* subgraph code and test
* line graph code and test
* adding new test for adding new features on line graphs
* no backtracking line graph
* fix inplace relabel
2018-08-18 14:14:43 -04:00
11e42d1094
Batching semantics and naive frame storage ( #31 )
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* batch message_func, reduce_func and update_func
Conflicts:
python/dgl/backend/pytorch.py
* test cases for batching
Conflicts:
python/dgl/graph.py
* resolve conflicts
* setter/getter
Conflicts:
python/dgl/graph.py
* test setter/getter
Conflicts:
python/dgl/graph.py
* merge DGLGraph and DGLBGraph
Conflicts:
python/dgl/graph.py
Conflicts:
python/dgl/graph.py
* batchability test
Conflicts:
python/dgl/graph.py
Conflicts:
python/dgl/graph.py
* New interface (draft)
Conflicts:
_reference/gat_mx.py
_reference/molecular-gcn.py
_reference/molecular-gcn_mx.py
_reference/multi-gcn.py
_reference/multi-gcn_mx.py
_reference/mx.py
python/dgl/graph.py
* Batch operations on graph
Conflicts:
.gitignore
python/dgl/backend/__init__.py
python/dgl/backend/numpy.py
python/dgl/graph.py
* sendto
* storage
* NodeDict
* DGLFrame/DGLArray
* scaffold code for graph.py
* clean up files; initial frame code
* basic frame tests using pytorch
* frame autograd test passed
* fix non-batched tests
* initial code for cached graph; tested
* batch sendto
* batch recv
* update routines
* update all
* anonymous repr batching
* specialize test
* igraph dep
* fix
* fix
* fix
* fix
* fix
* clean some files
* batch setter and getter
* fix utests
2018-07-30 14:10:37 -04:00
Minjie Wang